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March 2013

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Subject	From	Date	Size
Re: IMPUTE2 imputation with low concordance	Dominic Chan	Sat, 30 Mar 2013 15:43:46 -0700	874 lines
SNPTEST: could not calculate pvalue because the model could not be fit	SUBSCRIBE OXSTATGEN David Ho	Sat, 30 Mar 2013 14:45:41 +0000	47 lines
Re: SNPTEST limit of 100 individuals	Dina Christian	Fri, 29 Mar 2013 17:25:51 +0100	73 lines
Re: META problems	Jonathan Marchini	Fri, 29 Mar 2013 10:50:29 +0000	520 lines
Re: Typical number of imputed variants by IMPUTE2	Bryan Howie	Thu, 28 Mar 2013 17:23:06 -0500	94 lines
Re: Typical number of imputed variants by IMPUTE2	Fengshen (David) Kuo	Thu, 28 Mar 2013 17:05:29 -0500	224 lines
Re: Typical number of imputed variants by IMPUTE2	Fengshen (David) Kuo	Thu, 28 Mar 2013 16:35:14 -0500	202 lines
Typical number of imputed variants by IMPUTE2	Fengshen (David) Kuo	Thu, 28 Mar 2013 15:46:14 -0500	27 lines
Re: Typical number of imputed variants by IMPUTE2	Bryan Howie	Thu, 28 Mar 2013 15:45:32 -0500	145 lines
Re: Typical number of imputed variants by IMPUTE2	Bryan Howie	Thu, 28 Mar 2013 14:59:43 -0500	103 lines
Re: question about using a subset of reference haplotyps	Jin, Ying	Thu, 28 Mar 2013 12:44:53 -0600	11219 lines
Re: question about using a subset of reference haplotyps	Bryan Howie	Thu, 28 Mar 2013 13:16:48 -0500	122 lines
Re: question about using a subset of reference haplotyps	Latchezar (Lucho) Dimitrov	Thu, 28 Mar 2013 17:58:06 +0000	171 lines
question about using a subset of reference haplotyps	Jin, Ying	Thu, 28 Mar 2013 11:02:37 -0600	104 lines
Re: IMPUTE2 internal masking: r2_type0 vs. info_type0	Bryan Howie	Wed, 27 Mar 2013 13:15:43 -0500	2852 lines
IMPUTE2 internal masking: r2_type0 vs. info_type0	Sarah Nelson	Wed, 27 Mar 2013 09:42:51 -0700	1965 lines
Re: SNPTEST limit of 100 individuals	Parrado, Antonio R.,Ph.D.	Wed, 27 Mar 2013 13:50:07 +0000	87 lines
Re: IMPUTE2 for family data	Sewda, Anshuman	Tue, 26 Mar 2013 12:29:33 -0500	454 lines
Re: OR confidence intervals association p-value discrepancy	John Raelson	Tue, 26 Mar 2013 09:59:54 -0400	49 lines
Re: SHAPEIT2 -convert segmentation fault	Massimiliano Cocca	Tue, 26 Mar 2013 14:51:23 +0100	236 lines
Re: qctool gen->vcf conversion: GP tag in wrong format?	Gavin Band	Tue, 26 Mar 2013 13:33:36 +0000	94 lines
Re: SHAPEIT2 -convert segmentation fault	olivier delaneau	Tue, 26 Mar 2013 13:04:14 +0000	174 lines
Re: qctool gen->vcf conversion: GP tag in wrong format?	Warren W. Kretzschmar	Tue, 26 Mar 2013 11:48:05 +0000	68 lines
Re: qctool gen->vcf conversion: GP tag in wrong format?	Gavin Band	Tue, 26 Mar 2013 11:20:06 +0000	113 lines
Re: SNPTEST limit of 100 individuals	Nikolay Oskolkov	Tue, 26 Mar 2013 11:15:34 +0000	20 lines
Re: SNPTEST limit of 100 individuals	Gavin Band	Tue, 26 Mar 2013 11:06:10 +0000	46 lines
Re: no SNPTEST statistic for SNPs with high AF	Gavin Band	Tue, 26 Mar 2013 10:50:37 +0000	86 lines
Re: OR confidence intervals association p-value discrepancy	Jonathan Marchini	Tue, 26 Mar 2013 09:01:58 +0000	61 lines
Re: IMPUTE2 for family data	Jonathan Marchini	Tue, 26 Mar 2013 08:43:25 +0000	463 lines
Re: SHAPEIT2 and Mendel errors	Latchezar (Lucho) Dimitrov	Mon, 25 Mar 2013 15:50:13 +0000	248 lines
OR confidence intervals association p-value discrepancy	John Raelson	Mon, 25 Mar 2013 15:41:50 +0000	381 lines
SHAPEIT2 -convert segmentation fault	Massimiliano Cocca	Mon, 25 Mar 2013 10:38:44 +0000	57 lines
Re: SHAPEIT2 and Mendel errors	olivier delaneau	Mon, 25 Mar 2013 10:07:38 +0000	88 lines
SHAPEIT2 and Mendel errors	Latchezar (Lucho) Dimitrov	Sun, 24 Mar 2013 21:25:42 +0000	22 lines
IMPUTE2 Family Data	Anshuman Sewda	Fri, 22 Mar 2013 16:05:47 +0000	66 lines
IMPUTE2 for family data	Sewda, Anshuman	Fri, 22 Mar 2013 11:02:10 -0500	330 lines
SHAPEIT2 -convert segmentation fault	Massimiliano Cocca	Fri, 22 Mar 2013 12:01:20 +0000	128 lines
qctool gen->vcf conversion: GP tag in wrong format?	Warren W. Kretzschmar	Fri, 22 Mar 2013 08:41:19 +0000	49 lines
Re: SHAPEIT output	Jonathan Marchini	Fri, 22 Mar 2013 00:32:48 +0000	169 lines
SHAPEIT output	Hu, Donglei	Fri, 22 Mar 2013 00:04:50 +0000	110 lines
Re: compressed haps in impute2	Latchezar (Lucho) Dimitrov	Thu, 21 Mar 2013 16:19:24 +0000	144 lines
Re: compressed haps in impute2	olivier delaneau	Thu, 21 Mar 2013 12:09:07 +0000	387 lines
Re: compressed haps in impute2	Latchezar (Lucho) Dimitrov	Tue, 19 Mar 2013 15:56:37 +0000	253 lines
Re: compressed haps in impute2	<>	Tue, 19 Mar 2013 15:16:42 +0000	201 lines
Re: compressed haps in impute2	Latchezar (Lucho) Dimitrov	Tue, 19 Mar 2013 14:49:01 +0000	176 lines
Re: compressed haps in impute2	<>	Tue, 19 Mar 2013 08:31:46 +0000	129 lines
compressed haps in impute2	Latchezar (Lucho) Dimitrov	Mon, 18 Mar 2013 20:37:49 +0000	555 lines
Re: IMPUTE2 imputation with low concordance	Dominic Chan	Mon, 18 Mar 2013 10:53:50 -0700	703 lines
Re: SNP alignment with phaseit before prephasing	Anu Pasanen	Mon, 18 Mar 2013 07:51:22 +0000	6154 lines
Re: SNP alignment with phaseit before prephasing	olivier delaneau	Fri, 15 Mar 2013 14:51:11 +0000	295 lines
SNP alignment with phaseit before prephasing	Anu Pasanen	Fri, 15 Mar 2013 10:19:10 +0000	263 lines
Re: post-imputation filtering and qc	Namjou-Khales, Bahram	Thu, 14 Mar 2013 22:35:50 +0000	288 lines
Re: post-imputation filtering and qc	Bryan Howie	Thu, 14 Mar 2013 15:08:56 -0500	163 lines
post-imputation filtering and qc	Namjou-Khales, Bahram	Thu, 14 Mar 2013 17:15:30 +0000	121 lines
no SNPTEST statistic for SNPs with high AF	josine min	Thu, 14 Mar 2013 11:41:39 +0000	68 lines
Re: Concordance rare	Bryan Howie	Wed, 13 Mar 2013 11:37:32 -0500	181 lines
Re: reference allele in legend files	Mary (Cunningham) Comeau	Wed, 13 Mar 2013 16:30:44 +0000	454 lines
Concordance rare	Dina Christian	Wed, 13 Mar 2013 17:23:32 +0100	49 lines
Re: Merging reference sets and excluding reference haplotypes	Patrick Deelen	Wed, 13 Mar 2013 15:31:40 +0100	134 lines
Re: reference allele in legend files	Gavin Band	Wed, 13 Mar 2013 13:37:39 +0000	265 lines
Re: reference allele in legend files	Mary (Cunningham) Comeau	Wed, 13 Mar 2013 13:21:14 +0000	253 lines
Re: Removing Samples from Phased Study Haplotypes in IMPUTE	Bryan Howie	Tue, 12 Mar 2013 19:54:10 -0500	687 lines
Re: IMPUTE2 imputation with low concordance	Bryan Howie	Tue, 12 Mar 2013 19:43:42 -0500	544 lines
Re: Merging reference sets and excluding reference haplotypes	Bryan Howie	Tue, 12 Mar 2013 19:18:02 -0500	98 lines
Merging reference sets and excluding reference haplotypes	Patrick Deelen	Tue, 12 Mar 2013 21:38:44 +0100	59 lines
Re: -merge_ref_panels_output_ref does not seem to work	Jie Huang	Tue, 12 Mar 2013 14:02:36 -0000	229 lines
New Bioinformatics Job Opportunity	Judit Kumuthini	Mon, 11 Mar 2013 12:35:36 +0200	8478 lines
Re: IMPUTE2 imputation with low concordance	Dominic Chan	Sun, 10 Mar 2013 19:05:01 -0700	560 lines
META problems	Heather Cordell	Sun, 10 Mar 2013 18:04:28 +0000	344 lines
Re: Removing Samples from Phased Study Haplotypes in IMPUTE	olivier delaneau	Thu, 7 Mar 2013 13:42:16 +0000	624 lines
Re: Removing Samples from Phased Study Haplotypes in IMPUTE	Kristin Ayers	Thu, 7 Mar 2013 13:35:11 +0000	522 lines
Re: Strand Issue with SHAPEIT2/IMPUTE2	Sourena Soheili	Thu, 7 Mar 2013 16:36:53 +0330	598 lines
-merge_ref_panels_output_ref does not seem to work	Jie Huang	Thu, 7 Mar 2013 12:46:55 -0000	370 lines
Re: Removing Samples from Phased Study Haplotypes in IMPUTE	olivier delaneau	Thu, 7 Mar 2013 11:52:01 +0000	116 lines
Removing Samples from Phased Study Haplotypes in IMPUTE	Kristin	Thu, 7 Mar 2013 11:42:01 +0000	24 lines
Re: Strand Issue with SHAPEIT2/IMPUTE2	olivier delaneau	Thu, 7 Mar 2013 10:43:40 +0000	553 lines
Re: Using SNPTEST on related individuals	Heather Cordell	Wed, 6 Mar 2013 18:24:31 +0000	55 lines
Re: Strand Issue with SHAPEIT2/IMPUTE2	Sourena Soheili	Wed, 6 Mar 2013 21:38:01 +0330	214 lines
Re: Some directions for genome-wide imputation	Latchezar (Lucho) Dimitrov	Wed, 6 Mar 2013 17:54:28 +0000	635 lines
Re: Strand Issue with SHAPEIT2/IMPUTE2	olivier delaneau	Wed, 6 Mar 2013 17:39:49 +0000	419 lines
Re: Strand Issue with SHAPEIT2/IMPUTE2	Bryan Howie	Wed, 6 Mar 2013 09:36:53 -0800	167 lines
Re: Strand Issue with SHAPEIT2/IMPUTE2	Sourena Soheili	Wed, 6 Mar 2013 21:00:52 +0330	160 lines
Re: Some directions for genome-wide imputation	Bryan Howie	Wed, 6 Mar 2013 09:22:03 -0800	476 lines
Using SNPTEST on related individuals	Paula	Wed, 6 Mar 2013 15:22:19 +0000	29 lines
Re: IMPUTE2: monomorphic type 2 SNPs treated as type 0?	olivier delaneau	Wed, 6 Mar 2013 11:20:47 +0000	311 lines
Re: Strand Issue with SHAPEIT2/IMPUTE2	olivier delaneau	Wed, 6 Mar 2013 11:07:35 +0000	293 lines
Re: Some directions for genome-wide imputation	Latchezar (Lucho) Dimitrov	Wed, 6 Mar 2013 03:40:28 +0000	311 lines
Re: Some directions for genome-wide imputation	Bryan	Tue, 5 Mar 2013 18:07:29 -0800	259 lines
Re: Some directions for genome-wide imputation	Latchezar (Lucho) Dimitrov	Wed, 6 Mar 2013 01:54:02 +0000	298 lines
Re: IMPUTE2: monomorphic type 2 SNPs treated as type 0?	Sarah Nelson	Tue, 5 Mar 2013 11:08:43 -0800	325 lines
UCSC vs. 1kG ref panel questions	Latchezar (Lucho) Dimitrov	Tue, 5 Mar 2013 17:53:10 +0000	57 lines
Re: remove indels from imputed geneotypes?	Stephane Bourgeois	Tue, 5 Mar 2013 17:21:42 -0000	522 lines
Re: remove indels from imputed geneotypes?	Massimiliano Cocca	Tue, 5 Mar 2013 17:04:56 +0000	323 lines
Re: remove indels from imputed geneotypes?	Stephane Bourgeois	Tue, 5 Mar 2013 16:27:27 -0000	325 lines
Re: remove indels from imputed geneotypes?	olivier delaneau	Tue, 5 Mar 2013 16:18:50 +0000	144 lines
Re: Strand Issue with SHAPEIT2/IMPUTE2	olivier delaneau	Tue, 5 Mar 2013 16:13:48 +0000	180 lines
Re: Strand Issue with SHAPEIT2/IMPUTE2	Sourena Soheili	Tue, 5 Mar 2013 19:35:13 +0330	59 lines
Re: Strand Issue with SHAPEIT2/IMPUTE2	Bryan Howie	Tue, 5 Mar 2013 07:46:39 -0800	89 lines
remove indels from imputed geneotypes?	Stephane Bourgeois	Tue, 5 Mar 2013 15:38:09 -0000	150 lines
Strand Issue with SHAPEIT2/IMPUTE2	Sourena Soheili	Tue, 5 Mar 2013 18:45:54 +0330	26 lines
SNPTEST limit of 100 individuals	Nikolay Oskolkov	Tue, 5 Mar 2013 14:06:26 +0000	25 lines
Re: effective size advice	Judit Kumuthini	Tue, 5 Mar 2013 15:42:23 +0200	47 lines
Re: IMPUTE2: monomorphic type 2 SNPs treated as type 0?	Bryan Howie	Mon, 4 Mar 2013 21:01:48 -0800	193 lines
Re: Verbose Mendelian errors in SHAPEIT2 output?	Latchezar (Lucho) Dimitrov	Mon, 4 Mar 2013 21:24:10 +0000	36 lines
IMPUTE2: monomorphic type 2 SNPs treated as type 0?	Sarah Nelson	Mon, 4 Mar 2013 12:58:47 -0800	190 lines
Verbose Mendelian errors in SHAPEIT2 output?	Latchezar (Lucho) Dimitrov	Mon, 4 Mar 2013 19:34:47 +0000	24 lines
Snptest log question	Mary (Cunningham) Comeau	Mon, 4 Mar 2013 18:09:01 +0000	202 lines
Re: Some directions for genome-wide imputation	Bryan Howie	Sun, 3 Mar 2013 11:54:50 -0600	199 lines
Re: Some directions for genome-wide imputation	Sourena Soheili	Sun, 3 Mar 2013 18:06:36 +0330	63 lines
Re: Some directions for genome-wide imputation	Bryan	Sun, 3 Mar 2013 06:47:40 -0600	53 lines
Re: Some directions for genome-wide imputation	Sourena Soheili	Sat, 2 Mar 2013 11:59:43 +0330	33 lines
Re: Some directions for genome-wide imputation	Bryan Howie	Fri, 1 Mar 2013 11:16:02 -0600	97 lines
Re: IMPUTE2: error using pre-phased chunks for imputation	Bryan Howie	Fri, 1 Mar 2013 11:01:46 -0600	82 lines
Re: Haplotype analysis for family related data	Manon Bernard	Fri, 1 Mar 2013 10:52:50 -0500	576 lines
Re: Haplotype analysis for family related data	Heather Cordell	Fri, 1 Mar 2013 10:59:09 +0000	342 lines
Some directions for genome-wide imputation	Sourena Soheili-Nezhad	Fri, 1 Mar 2013 10:56:23 +0000	26 lines
Re: IMPUTE2: error using pre-phased chunks for imputation	Denise Anderson	Fri, 1 Mar 2013 07:31:39 +0000	24 lines
Re: IMPUTE2: error using pre-phased chunks for imputation	Denise Anderson	Fri, 1 Mar 2013 07:22:28 +0000	23 lines

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March 2013

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