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April 2014

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Subject	From	Date	Size
Imputation stratigies for GWAS data	Jin, Ying	Wed, 30 Apr 2014 16:18:19 -0600	316 lines
Impute2 - Empty output	Ettore Rizzo	Wed, 30 Apr 2014 15:45:26 +0100	5076 lines
IMPUTE2 -impute_excluded	Tommy Carstensen	Wed, 30 Apr 2014 11:11:59 +0000	49 lines
Re: imputation of samples genotyped on different chips	George McMahon	Wed, 30 Apr 2014 09:39:04 +0100	166 lines
checking understanding of filt_rules_l	Sarah Nelson	Tue, 29 Apr 2014 21:33:48 -0700	155 lines
Imputation stratigies for GWAS data	Jin, Ying	Tue, 29 Apr 2014 16:22:41 -0600	298 lines
Re: SHAPEIT- trio- refine genotypes accuracy and effect for de novo events	Jared O'Connell	Tue, 29 Apr 2014 20:58:37 +0100	46 lines
Re: Ubuntu: cannot execute binary file	Tromp, Gerardus C.	Tue, 29 Apr 2014 13:41:33 +0000	311 lines
Re: Ubuntu: cannot execute binary file	Qianqian	Tue, 29 Apr 2014 21:39:16 +0800	336 lines
Re: Ubuntu: cannot execute binary file	Tromp, Gerardus C.	Tue, 29 Apr 2014 10:23:23 +0000	286 lines
Re: Ubuntu: cannot execute binary file	Quinta Helmer	Tue, 29 Apr 2014 11:14:55 +0200	395 lines
SHAPEIT- trio- refine genotypes accuracy and effect for de novo events	[log in to unmask]	Tue, 29 Apr 2014 07:50:17 +0800	176 lines
ChrX imputation concordance.	Zheng Zhang	Mon, 28 Apr 2014 20:03:46 +0000	109 lines
Re: [IMPUTE2] mixed study genotypes from YRI and CEU - should I impute separately?	Raquel Liboredo	Mon, 28 Apr 2014 15:44:07 -0300	294 lines
Re: [IMPUTE2] mixed study genotypes from YRI and CEU - should I impute separately?	Giuseppe Gallone	Mon, 28 Apr 2014 15:24:47 +0100	98 lines
Re: Ubuntu: cannot execute binary file	Latchezar (Lucho) Dimitrov	Mon, 28 Apr 2014 13:50:45 +0000	605 lines
Re: Ubuntu: cannot execute binary file	Qianqian	Mon, 28 Apr 2014 20:32:31 +0800	211 lines
Re: [IMPUTE2] mixed study genotypes from YRI and CEU - should I impute separately?	Warren W. Kretzschmar	Mon, 28 Apr 2014 12:12:58 +0100	180 lines
Re: [IMPUTE2] mixed study genotypes from YRI and CEU - should I impute separately?	Giuseppe Gallone	Mon, 28 Apr 2014 11:52:32 +0100	63 lines
Re: Question:IMPUTE2: the p-value of snps in the output gen file is different from the original snp in plink.assoc .	henry wong sung ching	Mon, 28 Apr 2014 16:21:41 +0800	301 lines
Re: Question:IMPUTE2: the p-value of snps in the output gen file is different from the original snp in plink.assoc .	Jonathan Marchini	Mon, 28 Apr 2014 09:09:55 +0100	280 lines
Re: Question:IMPUTE2: the p-value of snps in the output gen file is different from the original snp in plink.assoc .	henry wong sung ching	Mon, 28 Apr 2014 15:58:56 +0800	236 lines
Re: Question:IMPUTE2: the p-value of snps in the output gen file is different from the original snp in plink.assoc .	henry wong sung ching	Mon, 28 Apr 2014 15:30:47 +0800	202 lines
Re: Question:IMPUTE2: the p-value of snps in the output gen file is different from the original snp in plink.assoc .	Jonathan Marchini	Sun, 27 Apr 2014 21:40:57 +0100	77 lines
Question:IMPUTE2: the p-value of snps in the output gen file is different from the original snp in plink.assoc .	SUBSCRIBE OXSTATGEN Henry WOng	Sun, 27 Apr 2014 15:29:47 +0100	74 lines
Question:IMPUTE2: the p-value of snps in the output gen file is different from the original snp in plink.assoc .	SUBSCRIBE OXSTATGEN Henry WOng	Sun, 27 Apr 2014 15:16:45 +0100	70 lines
Re: Ubuntu: cannot execute binary file	Tromp, Gerardus C.	Sat, 26 Apr 2014 18:03:06 +0000	296 lines
Re: Ubuntu: cannot execute binary file	Sander W. van der Laan MSc.	Sat, 26 Apr 2014 18:33:24 +0200	142 lines
Re: Ubuntu: cannot execute binary file	Qianqian	Sat, 26 Apr 2014 19:31:58 +0800	90 lines
Re: Ubuntu: cannot execute binary file	Sander W. van der Laan MSc.	Sat, 26 Apr 2014 10:23:18 +0200	46 lines
Ubuntu: cannot execute binary file	Qianqian	Sat, 26 Apr 2014 15:49:26 +0800	39 lines
Re: UK10K project haplotype reference panel now available	Jin, Ying	Fri, 25 Apr 2014 11:41:55 -0600	96 lines
Re: UK10K project haplotype reference panel now available	Jin, Ying	Fri, 25 Apr 2014 11:39:36 -0600	88 lines
Re: converting output to ped/map	Jessica Cooke Bailey	Fri, 25 Apr 2014 12:28:46 -0400	207 lines
Re: converting output to ped/map	Sarah Nelson	Fri, 25 Apr 2014 09:24:56 -0700	225 lines
[IMPUTE2] mixed study genotypes from YRI and CEU - should I impute separately?	Giuseppe Gallone	Fri, 25 Apr 2014 12:46:30 +0100	52 lines
problems with reference panel - chrX protocol	Vanessa Oliveira	Fri, 25 Apr 2014 07:11:43 -0400	201054 lines
Re: UK10K project haplotype reference panel now available	Jie Huang	Fri, 25 Apr 2014 10:12:51 +0100	100 lines
UK10K project haplotype reference panel now available	Nicole Soranzo	Fri, 25 Apr 2014 10:00:22 +0100	76 lines
Re: converting output to ped/map	Sander W. van der Laan	Fri, 25 Apr 2014 10:53:50 +0200	87 lines
Re: Getting an error in SNPTEST	Gavin Band	Fri, 25 Apr 2014 07:16:47 +0000	205 lines
converting output to ped/map	Vanessa Oliveira	Thu, 24 Apr 2014 23:33:51 -0400	37 lines
Re: Getting an error in SNPTEST	Mary (Cunningham) Comeau	Thu, 24 Apr 2014 18:24:47 +0000	39 lines
Re: imputation of samples genotyped on different chips	Sarah Nelson	Wed, 23 Apr 2014 08:46:23 -0700	197 lines
imputation of samples genotyped on different chips	George McMahon	Tue, 22 Apr 2014 12:41:31 +0100	63 lines
Coding of missing data in .haps file	Levine, Adam	Tue, 22 Apr 2014 08:24:29 +0000	115 lines
Re: Problem links	Jonathan Marchini	Thu, 17 Apr 2014 17:26:58 +0100	32 lines
Re: Problem links	Levine, Adam	Thu, 17 Apr 2014 15:24:49 +0000	44 lines
Re: Problem links	Mark Ebbert	Thu, 17 Apr 2014 08:49:10 -0600	37 lines
Re: Problem links	Jonathan Marchini	Thu, 17 Apr 2014 15:14:04 +0100	23 lines
Problem links	Levine, Adam	Thu, 17 Apr 2014 12:07:48 +0000	21 lines
Re: SNPTEST --snpid	Latchezar (Lucho) Dimitrov	Tue, 15 Apr 2014 15:01:25 +0000	214 lines
SNPTEST --snpid	Jie Huang	Tue, 15 Apr 2014 14:08:41 +0100	150 lines
IMPUTE error: genotype probabilities do not sum to 1	Melanie Garrett	Fri, 11 Apr 2014 19:14:17 +0100	219 lines
Re: Running SHAPEIT with an extended family with missing individuals	Latchezar (Lucho) Dimitrov	Fri, 11 Apr 2014 17:18:11 +0000	273 lines
Re: Running SHAPEIT with an extended family with missing individuals	Jared O'Connell	Fri, 11 Apr 2014 17:39:24 +0100	74 lines
Re: Running SHAPEIT with an extended family with missing individuals	Latchezar (Lucho) Dimitrov	Fri, 11 Apr 2014 16:01:35 +0000	216 lines
Re: Running SHAPEIT with an extended family with missing individuals	Levine, Adam	Fri, 11 Apr 2014 15:36:48 +0000	211 lines
Re: Running SHAPEIT with an extended family with missing individuals	Jared O'Connell	Fri, 11 Apr 2014 15:50:32 +0100	60 lines
Running SHAPEIT with an extended family with missing individuals	Levine, Adam	Fri, 11 Apr 2014 14:17:38 +0000	43 lines
Re: IMPUTE2 iteration problem	Han, Shizhong	Fri, 11 Apr 2014 14:13:37 +0000	676 lines
Re: IMPUTE2 iteration problem	Jonathan Marchini	Fri, 11 Apr 2014 12:39:04 +0100	388 lines
IMPUTE2 iteration problem	Han, Shizhong	Fri, 11 Apr 2014 07:06:07 +0000	339 lines
Re: strand alignment	Qianqian	Fri, 11 Apr 2014 08:49:49 +0800	376 lines
Re: impute2 merged reference panels	Han, Shizhong	Thu, 10 Apr 2014 22:22:45 +0000	196 lines
Re: Phasing error using phase-informative reads (PIRs)	Mark Ebbert	Thu, 10 Apr 2014 20:10:37 +0100	24 lines
Re: strand alignment	William Rayner	Thu, 10 Apr 2014 07:52:48 +0000	418 lines
impute2 merged reference panels	Shizhong Han	Thu, 10 Apr 2014 05:23:25 +0100	36 lines
Re: strand alignment	Qianqian	Thu, 10 Apr 2014 08:39:55 +0800	197 lines
Re: strand alignment	Latchezar (Lucho) Dimitrov	Wed, 9 Apr 2014 17:12:02 +0000	356 lines
Re: strand alignment	William Rayner	Wed, 9 Apr 2014 14:01:32 +0000	227 lines
Re: strand alignment	Arvis Sulovari	Wed, 9 Apr 2014 09:37:46 -0400	159 lines
strand alignment	Qianqian	Wed, 9 Apr 2014 20:40:53 +0800	56 lines
Re: new 1000 genome data	Zhang, Weiming	Tue, 8 Apr 2014 15:03:10 -0600	73 lines
Re: new 1000 genome data	Tommy Carstensen	Tue, 8 Apr 2014 20:57:06 +0000	549 lines
data from differnt platform	Zhang, Weiming	Tue, 8 Apr 2014 14:34:27 -0600	21 lines
new 1000 genome data	Zhang, Weiming	Tue, 8 Apr 2014 14:30:08 -0600	29 lines
Re: Phasing error using phase-informative reads (PIRs)	Mark Ebbert	Mon, 7 Apr 2014 12:57:03 -0600	349 lines
Re: imputing pseudo-autosomal regions with IMPUTE2	Bryan Howie	Mon, 7 Apr 2014 11:33:15 -0700	579 lines
Re: imputing pseudo-autosomal regions with IMPUTE2	Latchezar (Lucho) Dimitrov	Mon, 7 Apr 2014 18:26:59 +0000	564 lines
Re: imputing pseudo-autosomal regions with IMPUTE2	Sarah Nelson	Mon, 7 Apr 2014 10:41:32 -0700	457 lines
Re: feature request...	Gavin Band	Mon, 7 Apr 2014 11:41:59 +0000	103 lines
Re: SNPTEST --hwe	Gavin Band	Mon, 7 Apr 2014 11:38:34 +0000	33 lines
IMPUTE2 2.3.0 segmentation fault	Shrine, Nick (Dr.)	Sun, 6 Apr 2014 21:54:29 +0000	530 lines
Re: Installing gtool in Redhat Enterprise 6.0	Sander W. van der Laan MSc.	Fri, 4 Apr 2014 19:10:52 +0200	623 lines
Re: Installing gtool in Redhat Enterprise 6.0	Alexis Frazier-Wood	Fri, 4 Apr 2014 11:59:02 -0500	600 lines
Re: Installing gtool in Redhat Enterprise 6.0	Tromp, Gerardus C.	Fri, 4 Apr 2014 16:52:26 +0000	473 lines
Re: Installing gtool in Redhat Enterprise 6.0	Alexis Frazier-Wood	Fri, 4 Apr 2014 11:42:20 -0500	387 lines
Re: Installing gtool in Redhat Enterprise 6.0	Tromp, Gerardus C.	Fri, 4 Apr 2014 16:10:59 +0000	87 lines
Re: Installing gtool in Redhat Enterprise 6.0	Mark Ebbert	Fri, 4 Apr 2014 09:41:48 -0600	64 lines
Installing gtool in Redhat Enterprise 6.0	Alexis Wood	Fri, 4 Apr 2014 16:01:42 +0100	50 lines
Re: SNPtest X-chromosome	Dijk, FN (bkk)	Fri, 4 Apr 2014 12:15:32 +0000	89 lines
Re: Problem in -convert of SHAPEITv2	Olivier Delaneau	Fri, 4 Apr 2014 11:15:32 +0200	117 lines
Problem in -convert of SHAPEITv2	PengMin-Sheng	Fri, 4 Apr 2014 16:48:45 +0800	55 lines
Re: subset SNPs	Latchezar (Lucho) Dimitrov	Fri, 4 Apr 2014 00:36:41 +0000	413 lines
Re: Duplicate rs113940759 on chr22 in Dec 2013 reference panel	Latchezar (Lucho) Dimitrov	Fri, 4 Apr 2014 00:19:35 +0000	124 lines
Re: subset SNPs	Sander W. van der Laan MSc.	Thu, 3 Apr 2014 23:25:22 +0200	211 lines
Re: Duplicate rs113940759 on chr22 in Dec 2013 reference panel	Fengshen (David) Kuo	Thu, 3 Apr 2014 16:22:07 -0400	79 lines
Re: Duplicate rs113940759 on chr22 in Dec 2013 reference panel	Latchezar (Lucho) Dimitrov	Thu, 3 Apr 2014 19:57:59 +0000	35 lines
Re: Variants renamed as "." or updated with rsid after running impute	Latchezar (Lucho) Dimitrov	Thu, 3 Apr 2014 19:27:34 +0000	27 lines
Re: Variants renamed as "." or updated with rsid after running impute	Ake Lu	Thu, 3 Apr 2014 20:00:37 +0100	18 lines
Re: Variants renamed as "." or updated with rsid after running impute	David Kuo	Thu, 3 Apr 2014 19:51:13 +0100	26 lines
Duplicate rs113940759 on chr22 in Dec 2013 reference panel	David Kuo	Thu, 3 Apr 2014 19:46:52 +0100	25 lines
SNPTEST --hwe	Latchezar (Lucho) Dimitrov	Thu, 3 Apr 2014 17:02:47 +0000	20 lines
Re: subset SNPs	Latchezar (Lucho) Dimitrov	Thu, 3 Apr 2014 16:58:40 +0000	246 lines
Re: Phasing error using phase-informative reads (PIRs)	Warren W. Kretzschmar	Thu, 3 Apr 2014 17:15:33 +0200	390 lines
Re: Phasing error using phase-informative reads (PIRs)	Olivier Delaneau	Thu, 3 Apr 2014 16:23:19 +0200	303 lines
feature request...	Sander W. van der Laan	Thu, 3 Apr 2014 15:58:03 +0200	62 lines
Re: Phasing error using phase-informative reads (PIRs)	Mark Ebbert	Thu, 3 Apr 2014 07:32:36 -0600	263 lines
Re: minor alleles	Vince Forgetta	Thu, 3 Apr 2014 08:39:53 -0400	104 lines
file format	Sander W. van der Laan	Thu, 3 Apr 2014 12:43:04 +0200	59 lines
subset SNPs	Sander W. van der Laan	Thu, 3 Apr 2014 09:37:08 +0200	215422 lines
Re: Phasing error using phase-informative reads (PIRs)	Olivier Delaneau	Thu, 3 Apr 2014 08:59:34 +0200	218 lines
Phasing error using phase-informative reads (PIRs)	Mark Ebbert	Thu, 3 Apr 2014 06:42:52 +0100	80 lines
Re: origin of genetic map	Bryan Howie	Wed, 2 Apr 2014 22:40:35 -0700	45 lines
Re: origin of genetic map	Mark Ebbert	Thu, 3 Apr 2014 06:37:07 +0100	13 lines
Re: minor alleles	Latchezar (Lucho) Dimitrov	Thu, 3 Apr 2014 03:12:41 +0000	34 lines
Re: Variants renamed as "." or updated with rsid after running impute	Ake Lu	Thu, 3 Apr 2014 02:17:06 +0100	22 lines
Re: minor alleles	Zhang, Weiming	Wed, 2 Apr 2014 16:59:13 -0600	47 lines
Re: minor alleles	Bryan Howie	Wed, 2 Apr 2014 10:52:55 -0700	67 lines
Re: minor alleles	Vince Forgetta	Wed, 2 Apr 2014 13:43:32 -0400	39 lines
Re: minor alleles	Sander W. van der Laan	Wed, 2 Apr 2014 19:33:50 +0200	31 lines
minor alleles	Zhang, Weiming	Wed, 2 Apr 2014 11:15:25 -0600	20 lines
Re: SNPtest X-chromosome	Latchezar (Lucho) Dimitrov	Wed, 2 Apr 2014 15:01:25 +0000	69 lines
SNPtest X-chromosome	Nicole Dijk	Wed, 2 Apr 2014 09:57:10 +0100	633 lines
Re: origin of genetic map	Mark Ebbert	Tue, 1 Apr 2014 08:59:37 -0600	62 lines
new release of SHAPEIT (v2 r778) with bugfix in the --duohmm routine	Jared O'Connell	Tue, 1 Apr 2014 09:43:55 +0100	67 lines

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April 2014

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