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November 2017


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Table of Contents:

.lock_default_pipeline.star file (6 messages)
3D refinement in relion2.1 (3 messages)
Autopicking - reading *_combinedCCF.spi files (2 messages)
Briggs/Scheres collaborative postdoc position (1 message)
Bug fix in MotionCor2_1.0.1 (2 messages)
CCP4 Study Weekend 2018 - Early bird deadline coming up on 19 November 2017 (1 message)
CCP4 Study Weekend 2018 - Registration closes 10 December 2017 (1 message)
Cluster Movie Refinement in Relion2.0 and 2.1-b1 (1 message)
Combining phase plate with non-phase plate data (4 messages)
content in star file (1 message)
Core EMDB developer position (1 message)
Cryo-EM Specialist position at the Harvard Cryo-EM Center for Structural Biology (1 message)
cryoEM course in Prato (1 message)
CryoEM postdoctoral position at the Wellcome Centre for Cell Biology, Edinburgh, UK (1 message)
CryoEM postdoctoral position at the Wellcome Centre for Cell Biology, Edinburgh, UK | Corrected weblink (1 message)
CtfFind4.1.8 with Relion2.1 (1 message)
Electron Microscopist/Structural Biologist (NCI) open position (1 message)
EM Validation Developer Post (1 message)
EMAN2 particle alignment (2 messages)
EMBO Practical Course CEM3DIP 2018: of macromolecular assemblies and cellular tomography (1 message)
EMBO Practical Course CEM3DIP 2018: of macromolecular assemblies and cellular tomography: Final Announcement (1 message)
EMBO Practical Course on Characterization of macromolecular complexes by integrative structural biology (1 message)
Faculty Position at Indiana University (1 message)
Final Call for Oxford Workshop (1 message)
Final reminder - CCP4 Study Weekend 2018 - Early bird deadline coming up on 19 November 2017 (this Sunday) (1 message)
Final reminder - CCP4 Study Weekend 2018 - Only 3 days until Early bird deadline on 19 November 2017 (this Sunday!!) (1 message)
ftp://ftp.mrc-lmb.cam.ac.uk/pub/scheres/relion20_tutorial.pdf (2 messages)
How to mutate the residues to UNK (3 messages)
local symmetry (4 messages)
Max Planck Institute of Biochemistry: Cryo-EM staff position (1 message)
Movie Extraction Help (1 message)
normalize density of subtomograms (3 messages)
Open positions in MRC-LMB EM facility (1 message)
PDRA in structural cell biology (1 message)
Positions in LMB EM facility (1 message)
Postdoc - methods for subtomogram averaging (1 message)
Postdoctoral position IECB Bordeaux, France (1 message)
PostDoctoral positions in Yale University (1 message)
Postdoctoral postion in Sydney Australia (1 message)
Processing data in chunks (1 message)
Relion - Can't seem to get a proper mask for correct resolution estimation (2 messages)
Relion 2.1 2DCA different results GPU / CPU usage (4 messages)
relion 3D refinement error (1 message)
Relion Polishing Error FSC curve (5 messages)
Relion post process error (2 messages)
relion Refine3D fails with GPU but runs without it. (12 messages)
Relion Subtomo and GCTF (3 messages)
Relion Subtomo Run Time (2 messages)
Relion-MotionCor2 naming issue (3 messages)
Resolution Criteria in 3D data processing (cryo-EM) (2 messages)
Running MotionCorr as part of the tutorial (2 messages)
Scientist Position for "Biological Electron Microscopy" at MPI-BPC, Göttingen (2 messages)
Tenure track faculty position at The Scripps Research Institute (1 message)
Three cryo-EM postdoc positions open in Helsinki (1 message)
Wellcome funded CryoEM postdoctoral position available (1 message)
[3dem] Resolution Criteria in 3D data processing (cryo-EM) (1 message)
[EXTERNAL] Re: [ccpem] Running MotionCorr as part of the tutorial (3 messages)

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Subject Sorted by Subject, Most Recent First

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Date

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New Thread

.lock_default_pipeline.star file

Re: .lock_default_pipeline.star file

Edoardo D'Imprima

Mon, 27 Nov 2017 10:19:57 +0100

386 lines

Re: .lock_default_pipeline.star file

Sjors Scheres

Mon, 27 Nov 2017 09:18:28 +0000

105 lines

Re: .lock_default_pipeline.star file

Edoardo D'Imprima

Mon, 27 Nov 2017 10:07:02 +0100

91 lines

Re: .lock_default_pipeline.star file

Joshua Lobo

Sat, 25 Nov 2017 19:32:21 -0600

140 lines

Re: .lock_default_pipeline.star file

Nicholas Gao

Sun, 26 Nov 2017 00:38:18 +0000

101 lines

.lock_default_pipeline.star file

Wei Lin

Sun, 26 Nov 2017 00:24:52 +0000

39 lines

New Thread

3D refinement in relion2.1

Re: 3D refinement in relion2.1

Bjoern Forsberg

Thu, 30 Nov 2017 17:48:23 +0100

172 lines

Re: 3D refinement in relion2.1

Joshua Lobo

Thu, 30 Nov 2017 10:09:13 -0600

115 lines

3D refinement in relion2.1

Wei Lin

Thu, 30 Nov 2017 14:54:16 +0000

48 lines

New Thread

Autopicking - reading *_combinedCCF.spi files

Re: Autopicking - reading *_combinedCCF.spi files

Sjors Scheres

Fri, 24 Nov 2017 09:04:22 +0000

39 lines

Autopicking - reading *_combinedCCF.spi files

Adrian Koh

Fri, 24 Nov 2017 16:12:04 +0900

83 lines

New Thread

Briggs/Scheres collaborative postdoc position

Briggs/Scheres collaborative postdoc position

John Briggs

Thu, 30 Nov 2017 17:20:41 +0000

70 lines

New Thread

Bug fix in MotionCor2_1.0.1

Re: Bug fix in MotionCor2_1.0.1

Grigory Sharov

Wed, 22 Nov 2017 11:43:03 +0000

95 lines

Bug fix in MotionCor2_1.0.1

Shawn Zheng

Mon, 6 Nov 2017 08:03:16 -0800

36 lines

New Thread

CCP4 Study Weekend 2018 - Early bird deadline coming up on 19 November 2017

CCP4 Study Weekend 2018 - Early bird deadline coming up on 19 November 2017

Karen McIntyre

Tue, 7 Nov 2017 11:53:33 +0000

60 lines

New Thread

CCP4 Study Weekend 2018 - Registration closes 10 December 2017

CCP4 Study Weekend 2018 - Registration closes 10 December 2017

Karen McIntyre

Thu, 23 Nov 2017 10:44:13 +0000

75 lines

New Thread

Cluster Movie Refinement in Relion2.0 and 2.1-b1

Cluster Movie Refinement in Relion2.0 and 2.1-b1

Neil Rzechorzek

Sun, 19 Nov 2017 15:05:26 +0000

91 lines

New Thread

Combining phase plate with non-phase plate data

Re: Combining phase plate with non-phase plate data

Joshua Lobo

Thu, 30 Nov 2017 09:55:08 -0600

166 lines

Re: Combining phase plate with non-phase plate data

Sjors Scheres

Thu, 30 Nov 2017 11:21:35 +0000

38 lines

Re: Combining phase plate with non-phase plate data

Ben Engel

Thu, 30 Nov 2017 00:28:21 +0100

83 lines

Combining phase plate with non-phase plate data

Joshua Lobo

Wed, 29 Nov 2017 18:08:46 +0000

22 lines

New Thread

content in star file

content in star file

CuiKunlei

Tue, 21 Nov 2017 23:39:08 +0800

1598 lines

New Thread

Core EMDB developer position

Core EMDB developer position

Ardan Patwardhan

Mon, 20 Nov 2017 09:35:30 +0000

80 lines

New Thread

Cryo-EM Specialist position at the Harvard Cryo-EM Center for Structural Biology

Cryo-EM Specialist position at the Harvard Cryo-EM Center for Structural Biology

Li, Zongli

Tue, 14 Nov 2017 16:49:17 +0000

203 lines

New Thread

cryoEM course in Prato

cryoEM course in Prato

Alex de Marco

Wed, 15 Nov 2017 17:40:12 +1100

297 lines

New Thread

CryoEM postdoctoral position at the Wellcome Centre for Cell Biology, Edinburgh, UK

CryoEM postdoctoral position at the Wellcome Centre for Cell Biology, Edinburgh, UK

ARULANANDAM Jeyaprakash

Fri, 3 Nov 2017 10:30:23 +0000

221 lines

New Thread

CryoEM postdoctoral position at the Wellcome Centre for Cell Biology, Edinburgh, UK | Corrected weblink

CryoEM postdoctoral position at the Wellcome Centre for Cell Biology, Edinburgh, UK | Corrected weblink

ARULANANDAM Jeyaprakash

Fri, 3 Nov 2017 10:54:59 +0000

221 lines

New Thread

CtfFind4.1.8 with Relion2.1

CtfFind4.1.8 with Relion2.1

Haugwitz, Martin

Thu, 16 Nov 2017 20:00:55 +0000

799 lines

New Thread

Electron Microscopist/Structural Biologist (NCI) open position

Electron Microscopist/Structural Biologist (NCI) open position

Natalia de Val

Thu, 16 Nov 2017 12:48:07 -0500

245 lines

New Thread

EM Validation Developer Post

EM Validation Developer Post

Ardan Patwardhan

Thu, 9 Nov 2017 09:44:21 +0000

80 lines

New Thread

EMAN2 particle alignment

Re: EMAN2 particle alignment

Ludtke, Steven J

Mon, 20 Nov 2017 13:19:14 +0000

195 lines

EMAN2 particle alignment

Schulz, Eike-Christian

Mon, 20 Nov 2017 09:10:13 +0000

21 lines

New Thread

EMBO Practical Course CEM3DIP 2018: of macromolecular assemblies and cellular tomography

EMBO Practical Course CEM3DIP 2018: of macromolecular assemblies and cellular tomography

Ramanathan Natesh

Fri, 3 Nov 2017 12:01:01 +0000

518 lines

New Thread

EMBO Practical Course CEM3DIP 2018: of macromolecular assemblies and cellular tomography: Final Announcement

EMBO Practical Course CEM3DIP 2018: of macromolecular assemblies and cellular tomography: Final Announcement

Ramanathan Natesh

Wed, 15 Nov 2017 05:41:04 +0000

561 lines

New Thread

EMBO Practical Course on Characterization of macromolecular complexes by integrative structural biology

EMBO Practical Course on Characterization of macromolecular complexes by integrative structural biology

Marco Marcia

Tue, 14 Nov 2017 12:36:57 +0100

116 lines

New Thread

Faculty Position at Indiana University

Faculty Position at Indiana University

Zlotnick, Adam

Fri, 17 Nov 2017 16:47:56 +0000

148 lines

New Thread

Final Call for Oxford Workshop

Final Call for Oxford Workshop

Susan Lea

Fri, 24 Nov 2017 17:05:00 +0000

64 lines

New Thread

Final reminder - CCP4 Study Weekend 2018 - Early bird deadline coming up on 19 November 2017 (this Sunday)

Re: Final reminder - CCP4 Study Weekend 2018 - Early bird deadline coming up on 19 November 2017 (this Sunday)

Karen McIntyre

Mon, 13 Nov 2017 08:43:38 +0000

61 lines

New Thread

Final reminder - CCP4 Study Weekend 2018 - Only 3 days until Early bird deadline on 19 November 2017 (this Sunday!!)

Final reminder - CCP4 Study Weekend 2018 - Only 3 days until Early bird deadline on 19 November 2017 (this Sunday!!)

Karen McIntyre

Fri, 17 Nov 2017 09:19:49 +0000

63 lines

New Thread

ftp://ftp.mrc-lmb.cam.ac.uk/pub/scheres/relion20_tutorial.pdf

Re: ftp://ftp.mrc-lmb.cam.ac.uk/pub/scheres/relion20_tutorial.pdf

Sjors Scheres

Tue, 7 Nov 2017 13:46:46 +0000

49 lines

ftp://ftp.mrc-lmb.cam.ac.uk/pub/scheres/relion20_tutorial.pdf

CuiKunlei

Tue, 7 Nov 2017 21:13:54 +0800

446 lines

New Thread

How to mutate the residues to UNK

Re: How to mutate the residues to UNK

Yang Shi

Thu, 16 Nov 2017 17:37:28 +0800

44 lines

Re: How to mutate the residues to UNK

Oliver Clarke

Thu, 16 Nov 2017 08:23:12 +0100

32 lines

How to mutate the residues to UNK

Yang Shi

Wed, 15 Nov 2017 23:01:16 +0800

20 lines

New Thread

local symmetry

Re: local symmetry

Kyle Morris

Thu, 23 Nov 2017 18:12:14 -0800

319 lines

Re: local symmetry

Huy Bui

Thu, 23 Nov 2017 12:53:47 -0500

192 lines

Re: local symmetry

Rémi Fronzes

Thu, 23 Nov 2017 17:15:05 +0100

211 lines

local symmetry

Rémi Fronzes

Mon, 13 Nov 2017 11:26:43 +0100

144 lines

New Thread

Max Planck Institute of Biochemistry: Cryo-EM staff position

Max Planck Institute of Biochemistry: Cryo-EM staff position

Mike Strauss

Thu, 30 Nov 2017 20:20:29 +0100

38 lines

New Thread

Movie Extraction Help

Movie Extraction Help

Ambrose Plante

Thu, 2 Nov 2017 16:43:19 +0000

87 lines

New Thread

normalize density of subtomograms

Re: normalize density of subtomograms

Peter Kirchweger

Wed, 15 Nov 2017 16:12:40 +0100

244 lines

Re: normalize density of subtomograms

Bjoern Forsberg

Wed, 15 Nov 2017 15:12:31 +0100

185 lines

normalize density of subtomograms

Peter Kirchweger

Wed, 15 Nov 2017 14:59:21 +0100

109 lines

New Thread

Open positions in MRC-LMB EM facility

Open positions in MRC-LMB EM facility

John Briggs

Mon, 6 Nov 2017 09:43:56 +0000

101 lines

New Thread

PDRA in structural cell biology

PDRA in structural cell biology

Neil Ranson

Mon, 13 Nov 2017 11:31:24 +0000

1428 lines

New Thread

Positions in LMB EM facility

Positions in LMB EM facility

John Briggs

Thu, 30 Nov 2017 17:26:28 +0000

95 lines

New Thread

Postdoc - methods for subtomogram averaging

Postdoc - methods for subtomogram averaging

John Briggs

Mon, 6 Nov 2017 15:20:45 +0000

66 lines

New Thread

Postdoctoral position IECB Bordeaux, France

Postdoctoral position IECB Bordeaux, France

Rémi Fronzes

Mon, 6 Nov 2017 11:45:35 +0100

206 lines

New Thread

PostDoctoral positions in Yale University

PostDoctoral positions in Yale University

Tat Cheng

Thu, 30 Nov 2017 00:24:39 +0000

37 lines

New Thread

Postdoctoral postion in Sydney Australia

Postdoctoral postion in Sydney Australia

Alastair Stewart

Mon, 20 Nov 2017 00:32:58 +0000

76 lines

New Thread

Processing data in chunks

Processing data in chunks

Pranav Shah

Wed, 29 Nov 2017 14:08:07 -0500

47 lines

New Thread

Relion - Can't seem to get a proper mask for correct resolution estimation

Re: Relion - Can't seem to get a proper mask for correct resolution estimation

Sjors Scheres

Sat, 18 Nov 2017 09:53:01 -0000

51 lines

Relion - Can't seem to get a proper mask for correct resolution estimation

Austin Dixon

Fri, 17 Nov 2017 19:23:36 +0000

28 lines

New Thread

Relion 2.1 2DCA different results GPU / CPU usage

Re: Relion 2.1 2DCA different results GPU / CPU usage

Sjors Scheres

Wed, 15 Nov 2017 09:51:10 +0000

79 lines

Re: Relion 2.1 2DCA different results GPU / CPU usage

Eric Gilles Hanssen

Wed, 15 Nov 2017 00:42:17 +0000

4359 lines

Re: Relion 2.1 2DCA different results GPU / CPU usage

Bjoern Forsberg

Thu, 9 Nov 2017 17:12:08 +0100

189 lines

Relion 2.1 2DCA different results GPU / CPU usage

Schulz, Eike-Christian

Thu, 9 Nov 2017 16:00:20 +0000

94 lines

New Thread

relion 3D refinement error

relion 3D refinement error

Wei Lin

Tue, 28 Nov 2017 00:48:32 +0000

49 lines

New Thread

Relion Polishing Error FSC curve

Re: Relion Polishing Error FSC curve

Joshua Hardy

Wed, 29 Nov 2017 06:01:10 +0000

3018 lines

Re: Relion Polishing Error FSC curve

Sjors Scheres

Thu, 23 Nov 2017 11:46:35 +0000

44 lines

Re: Relion Polishing Error FSC curve

Joshua Hardy

Mon, 20 Nov 2017 21:54:57 +0000

29 lines

Re: Relion Polishing Error FSC curve

Joshua Lobo

Mon, 20 Nov 2017 15:33:08 -0600

90 lines

Re: Relion Polishing Error FSC curve

Joshua Hardy

Mon, 20 Nov 2017 21:14:03 +0000

140342 lines

New Thread

Relion post process error

Re: Relion post process error

Shintaro Aibara

Thu, 23 Nov 2017 11:09:31 +0100

148 lines

Relion post process error

亓超

Thu, 23 Nov 2017 11:03:01 +0100

120 lines

New Thread

relion Refine3D fails with GPU but runs without it.

Re: relion Refine3D fails with GPU but runs without it.

Benoist LAURENT

Thu, 30 Nov 2017 14:13:00 +0100

141 lines

Re: relion Refine3D fails with GPU but runs without it.

Schenk, Andreas Daniel

Wed, 29 Nov 2017 14:12:54 +0000

96 lines

Re: relion Refine3D fails with GPU but runs without it.

Tru Huynh

Tue, 28 Nov 2017 11:56:25 +0100

53 lines

Re: relion Refine3D fails with GPU but runs without it.

Hemanth Kumar Narayana Reddy

Tue, 28 Nov 2017 10:36:57 +0000

437 lines

Re: relion Refine3D fails with GPU but runs without it.

Benoist LAURENT

Tue, 28 Nov 2017 11:05:15 +0100

257 lines

Re: relion Refine3D fails with GPU but runs without it.

<>

Tue, 28 Nov 2017 09:51:25 -0000

180 lines

Re: relion Refine3D fails with GPU but runs without it.

Shintaro Aibara

Tue, 28 Nov 2017 10:44:16 +0100

447 lines

Re: relion Refine3D fails with GPU but runs without it.

Benoist LAURENT

Tue, 28 Nov 2017 10:38:41 +0100

194 lines

Re: relion Refine3D fails with GPU but runs without it.

Sjors Scheres

Mon, 27 Nov 2017 21:08:25 -0000

101 lines

Re: relion Refine3D fails with GPU but runs without it.

Hemanth Kumar Narayana Reddy

Mon, 27 Nov 2017 16:21:05 +0000

216 lines

Re: relion Refine3D fails with GPU but runs without it.

Krieger, James M

Mon, 27 Nov 2017 16:08:42 +0000

288 lines

relion Refine3D fails with GPU but runs without it.

Valerie Biou

Mon, 27 Nov 2017 14:16:19 +0100

206 lines

New Thread

Relion Subtomo and GCTF

Re: Relion Subtomo and GCTF

kzhang

Sun, 19 Nov 2017 15:59:39 +0000

120 lines

Re: Relion Subtomo and GCTF

kzhang

Sun, 19 Nov 2017 15:56:23 +0000

83 lines

Relion Subtomo and GCTF

Reza Khayat

Sun, 19 Nov 2017 14:19:55 +0000

26 lines

New Thread

Relion Subtomo Run Time

Re: Relion Subtomo Run Time

Sjors Scheres

Sun, 19 Nov 2017 09:48:51 -0000

60 lines

Relion Subtomo Run Time

Linhua Tai

Sun, 19 Nov 2017 09:07:56 +0000

43 lines

New Thread

Relion-MotionCor2 naming issue

Re: Relion-MotionCor2 naming issue

Ambrose Plante

Thu, 30 Nov 2017 15:53:51 +0000

170 lines

Re: Relion-MotionCor2 naming issue

Sjors Scheres

Thu, 30 Nov 2017 11:20:18 +0000

38 lines

Relion-MotionCor2 naming issue

Ambrose Plante

Thu, 30 Nov 2017 03:36:19 +0000

28 lines

New Thread

Resolution Criteria in 3D data processing (cryo-EM)

Re: Resolution Criteria in 3D data processing (cryo-EM)

Carlos Oscar Sorzano

Sat, 25 Nov 2017 00:10:39 +0100

71 lines

Resolution Criteria in 3D data processing (cryo-EM)

Marin van Heel

Fri, 24 Nov 2017 20:46:27 -0200

85 lines

New Thread

Running MotionCorr as part of the tutorial

Re: Running MotionCorr as part of the tutorial

Joshua Lobo

Thu, 9 Nov 2017 17:39:41 -0600

160 lines

Running MotionCorr as part of the tutorial

Ketan Gajiwala

Thu, 9 Nov 2017 23:01:07 +0000

65 lines

New Thread

Scientist Position for "Biological Electron Microscopy" at MPI-BPC, Göttingen

Re: Scientist Position for "Biological Electron Microscopy" at MPI-BPC, Göttingen

Dimitry Tegunov

Sat, 11 Nov 2017 18:59:46 +0000

87 lines

Scientist Position for "Biological Electron Microscopy" at MPI-BPC, Göttingen

Dimitry Tegunov

Sat, 11 Nov 2017 16:44:51 +0000

88 lines

New Thread

Tenure track faculty position at The Scripps Research Institute

Tenure track faculty position at The Scripps Research Institute

Gabriel Lander

Fri, 10 Nov 2017 10:36:26 -0800

109 lines

New Thread

Three cryo-EM postdoc positions open in Helsinki

Three cryo-EM postdoc positions open in Helsinki

Juha Huiskonen

Fri, 17 Nov 2017 14:07:01 +0000

112 lines

New Thread

Wellcome funded CryoEM postdoctoral position available

Wellcome funded CryoEM postdoctoral position available

ARULANANDAM Jeyaprakash

Mon, 27 Nov 2017 11:28:24 +0000

218 lines

New Thread

[3dem] Resolution Criteria in 3D data processing (cryo-EM)

Re: [3dem] Resolution Criteria in 3D data processing (cryo-EM)

Carlos Oscar Sorzano

Sat, 25 Nov 2017 00:11:01 +0100

74 lines

New Thread

[EXTERNAL] Re: [ccpem] Running MotionCorr as part of the tutorial

Re: [EXTERNAL] Re: [ccpem] Running MotionCorr as part of the tutorial

Gajiwala, Ketan

Fri, 10 Nov 2017 16:09:04 +0000

83 lines

Re: [EXTERNAL] Re: [ccpem] Running MotionCorr as part of the tutorial

Sjors Scheres

Fri, 10 Nov 2017 06:32:34 -0000

112 lines

Re: [EXTERNAL] Re: [ccpem] Running MotionCorr as part of the tutorial

Gajiwala, Ketan

Thu, 9 Nov 2017 23:45:59 +0000

191 lines

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