JISCMail - CCPEM Archives

Daniel Asarnow

Wed, 23 Dec 2020 11:18:56 -0800

232 lines

Daniel Asarnow

Wed, 23 Dec 2020 11:18:14 -0800

210 lines

Victor Banerjee

Wed, 23 Dec 2020 10:16:44 -0600

147 lines

khaja faisal tarique

Wed, 23 Dec 2020 18:19:22 +0530

113 lines

Binning factor in Motioncor

Daniel Asarnow

Wed, 23 Dec 2020 02:00:10 -0800

88 lines

Firdous Tarique

Wed, 23 Dec 2020 14:46:53 +0530

48 lines

box size confusion

Victor Banerjee

Wed, 9 Dec 2020 20:07:40 -0600

169 lines

Sayan Bhakta

Thu, 10 Dec 2020 05:29:43 +0530

154 lines

Victor Banerjee

Wed, 9 Dec 2020 16:24:19 -0600

139 lines

Victor Banerjee

Wed, 9 Dec 2020 16:18:21 -0600

137 lines

Sayan Bhakta

Thu, 10 Dec 2020 00:15:30 +0530

117 lines

bug report: library issue running Coot via CCP-EM on Mac OS Catalina

Takanori Nakane

Wed, 9 Dec 2020 18:36:08 +0000

42 lines

box size confusion

Victor Banerjee

Wed, 9 Dec 2020 18:32:57 +0000

34 lines

Re: bug report: library issue running Coot via CCP-EM on Mac OS Catalina

Emilia Arturo

Thu, 10 Dec 2020 17:59:55 -0800

381 lines

Re: bug report: library issue running Coot via CCP-EM on Mac OS Catalina

Martin Montgomery

Thu, 10 Dec 2020 09:04:40 +0000

382 lines

Re: bug report: library issue running Coot via CCP-EM on Mac OS Catalina

Emilia Arturo

Wed, 9 Dec 2020 17:17:14 -0800

296 lines

Re: bug report: library issue running Coot via CCP-EM on Mac OS Catalina

Martin Montgomery

Wed, 9 Dec 2020 09:31:17 +0000

288 lines

Re: bug report: library issue running Coot via CCP-EM on Mac OS Catalina

Burnley, Tom (STFC,RAL,SC)

Wed, 9 Dec 2020 09:25:31 +0000

394 lines

bug report: library issue running Coot via CCP-EM on Mac OS Catalina

Emilia Arturo

Tue, 8 Dec 2020 17:46:53 -0800

223 lines

CEM3DIP Society of India, 1st Annual Symposium on Single particle CryoEM and Cellular Tomography, 19th Dec 2020

Ramanathan Natesh

Fri, 18 Dec 2020 12:28:28 +0000

155 lines

center of mass after signal subtraction

Re: center of mass after signal subtraction

Randy Watson

Wed, 9 Dec 2020 15:38:52 +0000

99 lines

Re: center of mass after signal subtraction

Dieter Blaas

Wed, 9 Dec 2020 08:45:01 +0100

130 lines

Re: center of mass after signal subtraction

Takanori Nakane

Wed, 9 Dec 2020 07:13:33 +0000

80 lines

center of mass after signal subtraction

Dieter Blaas

Wed, 9 Dec 2020 08:00:30 +0100

123 lines

Changing the euler angles to manually align a small part of the molecule

Re: Changing the euler angles to manually align a small part of the molecule

Benjamin Basanta

Tue, 15 Dec 2020 22:02:05 +0000

153 lines

Re: Changing the euler angles to manually align a small part of the molecule

Max Wilkinson

Tue, 15 Dec 2020 19:12:17 +0000

128 lines

Changing the euler angles to manually align a small part of the molecule

Ahmad Khalifa

Tue, 15 Dec 2020 09:47:44 -0800

53 lines

Correlative Microscopy and volume EM/ 5th joint symposium- 15-17 February 2021 on a virtual platform

Raffaella Carzaniga

Tue, 22 Dec 2020 16:03:38 +0000

156 lines

CoSeC Impact Award 2021 - call now open

Dawn Geatches

Mon, 21 Dec 2020 10:29:52 +0000

48 lines

CoVal: Mapping SARS-Cov2 genome mutations

Joseph, Agnel Praveen (STFC,RAL,SC)

Thu, 24 Dec 2020 10:59:53 +0000

254 lines

Cryo-EM Algorithms Postdoc Positions at Yale

Roy Lederman

Wed, 30 Dec 2020 10:06:41 -0500

28 lines

cryo-EM postdoc position in Klaholz lab CBI / IGBMC, Strasbourg

Bruno KLAHOLZ

Fri, 4 Dec 2020 15:17:31 +0000

1433 lines

CryoEM Position at Vertex

Alex Kintzer

Thu, 3 Dec 2020 22:01:34 +0000

119 lines

CryoEM Staff Scientist Position at Howard Hughes Medical Institute Janelia Research Campus

Yu, Zhiheng

Mon, 14 Dec 2020 16:13:07 +0000

81 lines

Ctfrefine results in weird shape

Re: Ctfrefine results in weird shape

Alfredo Jose Florez Ariza

Fri, 11 Dec 2020 00:37:18 -0500

192 lines

December 3rd CryoEM Webinar - Sudha Chakrapani

Dunn, Lisa B.

Tue, 1 Dec 2020 20:48:54 +0000

5726 lines

Dubochet Center for Imaging in Lausanne, Switzerland: Several Cryo-EM positions available: Facility head, Cryo-EM Experts, Service Engineer

Stahlberg Henning

Thu, 10 Dec 2020 10:34:14 +0000

414 lines

EER fractionation for non-EER formats

Re: EER fractionation for non-EER formats

Takanori Nakane

Thu, 31 Dec 2020 14:59:30 +0000

46 lines

EER fractionation for non-EER formats

David Belnap

Thu, 31 Dec 2020 14:55:18 +0000

30 lines

Electron Microscopist Position

Haselbach,David

Thu, 17 Dec 2020 11:05:14 +0000

301 lines

error Zero sum of weights

Takanori Nakane

Wed, 16 Dec 2020 15:48:15 +0000

69 lines

Franken, Linda

Wed, 16 Dec 2020 15:46:49 +0000

148 lines

Takanori Nakane

Tue, 15 Dec 2020 10:46:45 +0000

41 lines

Franken, Linda

Tue, 15 Dec 2020 10:03:40 +0000

1014 lines

Takanori Nakane

Mon, 14 Dec 2020 15:24:53 +0000

67 lines

error Zero sum of weights

Takanori Nakane

Mon, 14 Dec 2020 11:25:57 +0000

436 lines

Franken, Linda

Mon, 14 Dec 2020 11:16:22 +0000

897 lines

ERROR: only extracting to even-sized images is allowed in RELION

Re: ERROR: only extracting to even-sized images is allowed in RELION

Takanori Nakane

Thu, 10 Dec 2020 21:13:42 +0000

66 lines

ERROR: only extracting to even-sized images is allowed in RELION

Victor Banerjee

Thu, 10 Dec 2020 21:11:51 +0000

46 lines

FEI2 MRC file

Grigory Sharov

Mon, 7 Dec 2020 17:32:23 +0000

79 lines

FSC does not drop to zero

Takanori Nakane

Wed, 23 Dec 2020 06:17:27 +0000

105 lines

Grigory Sharov

Mon, 21 Dec 2020 13:28:37 +0000

306 lines

Aghil Soman

Mon, 21 Dec 2020 13:08:47 +0000

109 lines

FSC does not drop to zero

Takanori Nakane

Mon, 21 Dec 2020 10:19:28 +0000

72 lines

Aghil Soman

Mon, 21 Dec 2020 09:21:52 +0000

1873 lines

Head of Electron Microscopy Facility – Institut Pasteur, Paris

Anastasia Gazi

Wed, 9 Dec 2020 08:44:07 +0100

126 lines

How to interpret symmetry in Relion/Chimera

Firdous Tarique

Sun, 20 Dec 2020 16:42:35 +0530

142 lines

How would you export images of each particle in "particle.star" as PNG?

Re: How would you export images of each particle in "particle.star" as PNG?

Narashima Kumar

Wed, 9 Dec 2020 21:34:37 -0800

175 lines

Re: How would you export images of each particle in "particle.star" as PNG?

Narashima Kumar

Wed, 9 Dec 2020 21:33:44 -0800

156 lines

How would you export images of each particle in "particle.star" as PNG?

Gozde Eskici

Thu, 10 Dec 2020 05:12:47 +0000

126 lines

Imported Images are dark/black

Re: Imported Images are dark/black

Takanori Nakane

Mon, 14 Dec 2020 15:20:48 +0000

53 lines

Imported Images are dark/black

Stephan Tetter

Mon, 14 Dec 2020 13:56:11 +0000

16080 lines

Job Opportunity: Technical Account Managers at NanoImaging Services

Melanie Adams-Cioaba

Tue, 22 Dec 2020 13:57:50 -0500

88 lines

Mask creation problem

Re: Mask creation problem

Takanori Nakane

Wed, 16 Dec 2020 15:32:45 +0000

54 lines

Mask creation problem

Victor Banerjee

Wed, 16 Dec 2020 15:26:07 +0000

35 lines

MED02162 - Research Associate - Live

Fwd: MED02162 - Research Associate - Live

Zhang, Xiaodong

Mon, 7 Dec 2020 17:47:24 +0000

136 lines

MicroED workshop 2020

Re: MicroED workshop 2020

Johan Hattne

Sat, 12 Dec 2020 17:53:32 -0800

48 lines

MicroED workshop 2020

Johan Hattne

Tue, 8 Dec 2020 15:24:40 -0800

42 lines

Molecular motions of macromolecules

Almutasem Saleh

Tue, 1 Dec 2020 17:05:15 +0000

145 lines

Motioncorr error

Firdous Tarique

Thu, 10 Dec 2020 11:55:25 +0530

245 lines

Hutchison, Matt (NIH/NCI) [C]

Thu, 10 Dec 2020 06:02:44 +0000

231 lines

Firdous Tarique

Thu, 10 Dec 2020 10:50:45 +0530

168 lines

Hutchison, Matt (NIH/NCI) [C]

Thu, 10 Dec 2020 04:43:30 +0000

149 lines

Motioncorr error

Firdous Tarique

Thu, 10 Dec 2020 09:58:14 +0530

55 lines

nature news

Pierre Rizkallah

Tue, 1 Dec 2020 14:45:00 +0000

681 lines

Krieger, James M

Tue, 1 Dec 2020 09:16:29 +0000

559 lines

Teige Matthews-Palmer

Tue, 1 Dec 2020 11:58:56 +0900

365 lines

NCCAT 2021-C2 CryoEM access proposal deadline - January 1, 2021 - NYC, USA

Gavin Rice

Tue, 1 Dec 2020 00:40:44 +0000

250 lines

Ed Eng

Wed, 16 Dec 2020 22:54:51 +0000

285 lines

PhD studentship opportunities

Daum, Bertram

Wed, 16 Dec 2020 12:00:28 +0000

164 lines

Please help us improve our PDBe-KB aggregated views of proteins

David Armstrong

Mon, 7 Dec 2020 16:54:02 +0000

189 lines

Poor map after Bayesian polishing

Re: Poor map after Bayesian polishing

Takanori Nakane

Sun, 27 Dec 2020 07:38:14 +0000

91 lines

Re: Poor map after Bayesian polishing

Ahmad Khalifa

Sat, 26 Dec 2020 11:50:38 -0800

167 lines

Re: Poor map after Bayesian polishing

Takanori Nakane

Fri, 25 Dec 2020 21:27:01 +0000

52 lines

Poor map after Bayesian polishing

Shanti Pal Gangwar

Fri, 25 Dec 2020 14:02:53 -0500

54 lines

Position in cryoEM computing at the Basque Center for Biophysics

Daniel Castano Diez

Tue, 22 Dec 2020 18:16:58 +0100

1071 lines

Post-doctoral vacancy in cryoEM of viruses

Hasan, Syed Saif

Tue, 22 Dec 2020 03:21:04 +0000

273 lines

Postdoc position at Washington University in St. Louis

Li, Weikai

Fri, 4 Dec 2020 19:55:12 +0000

2014 lines

Postdoc position available in IST Austria – cryo-EM structure determination of novel bioenergetic complexes

Leonid Sazanov

Thu, 10 Dec 2020 17:05:54 +0000

119 lines

Postdoc position in cryo-EM

leifu chang

Thu, 10 Dec 2020 09:42:23 -0500

202 lines

postdoc position RELION

Sjors Scheres

Thu, 10 Dec 2020 16:26:26 +0000

50 lines

Postdoc Positions - Reichow Lab

Steve Reichow

Wed, 2 Dec 2020 11:23:58 -0800

222 lines

Postdoc: understanding how motors and microtubules cooperate to ensure cell organisation

Marcus Wilson

Tue, 15 Dec 2020 15:32:57 +0000

110 lines

Postdoctoral position at Imperial College London

Bubeck, Doryen A

Tue, 15 Dec 2020 14:00:29 +0000

318 lines

Problem with CtfRef

Alfredo Jose Florez Ariza

Tue, 8 Dec 2020 22:25:44 -0500

77 lines

Problems with gcc complier version for Relion on Ubuntu 20.04

Re: Problems with gcc complier version for Relion on Ubuntu 20.04

Kasim Sader

Mon, 14 Dec 2020 11:11:48 +0000

107 lines

Re: Problems with gcc complier version for Relion on Ubuntu 20.04

Takanori Nakane

Mon, 14 Dec 2020 10:35:41 +0000

39 lines

Re: Problems with gcc complier version for Relion on Ubuntu 20.04

Grigory Sharov

Mon, 14 Dec 2020 10:28:56 +0000

149 lines

Problems with gcc complier version for Relion on Ubuntu 20.04

Kasim Sader

Mon, 14 Dec 2020 10:22:52 +0000

65 lines

Project form a 3D map to the particle

Re: Project form a 3D map to the particle

Takanori Nakane

Tue, 15 Dec 2020 10:43:33 +0000

39 lines

Project form a 3D map to the particle

Eduardo Romero

Tue, 15 Dec 2020 00:09:44 +0000

31 lines

Project Leader position in cryo-EM - Friedrich Miescher Institute, Basel, Switzerland

Simone Cavadini

Mon, 14 Dec 2020 10:32:42 +0000

53 lines

Question: Relion on Nvidia A100 GPU?

Re: Question: Relion on Nvidia A100 GPU?

Dr. Clara Cai

Tue, 8 Dec 2020 23:27:31 +0800

122 lines

Recruiting Cryo EM Facility Manager

Shaun Olsen

Mon, 7 Dec 2020 23:11:49 +0000

68 lines

Recruitment: cryoEM Senior Scientist, Abingdon UK

Katie Cunnea

Fri, 4 Dec 2020 09:34:40 +0000

948 lines

Ref based autopicking stops with error

Re: Ref based autopicking stops with error

Firdous Tarique

Tue, 1 Dec 2020 15:57:46 +0530

234 lines

Re: Ref based autopicking stops with error

Takanori Nakane

Tue, 1 Dec 2020 09:16:36 +0000

76 lines

Re: Ref based autopicking stops with error

Takanori Nakane

Tue, 1 Dec 2020 08:55:11 +0000

57 lines

Ref based autopicking stops with error

Firdous Tarique

Tue, 1 Dec 2020 13:46:34 +0530

82 lines

Registration for CCP4 Virtual Study Weekend 2021 is now live

McIntyre, Karen (STFC,RAL,SC)

Wed, 2 Dec 2020 09:48:38 +0000

667 lines

Relion 3.1 star import from cryosparc

Re: Relion 3.1 star import from cryosparc

Daniel Asarnow

Fri, 4 Dec 2020 15:36:56 -0800

181 lines

Relion 3.1 star import from cryosparc

Bang, Injin

Fri, 4 Dec 2020 19:42:46 +0000

9163 lines

Relion 3.1.1 copy to scratch slow for random subsets of particles

Re: Relion 3.1.1 copy to scratch slow for random subsets of particles

Andrea Nans

Wed, 16 Dec 2020 10:29:16 +0000

338 lines

Re: Relion 3.1.1 copy to scratch slow for random subsets of particles

Takanori Nakane

Tue, 15 Dec 2020 16:37:38 +0000

119 lines

Re: Relion 3.1.1 copy to scratch slow for random subsets of particles

Andrea Nans

Tue, 15 Dec 2020 16:32:41 +0000

200 lines

Re: Relion 3.1.1 copy to scratch slow for random subsets of particles

Takanori Nakane

Tue, 15 Dec 2020 16:20:30 +0000

75 lines

Relion 3.1.1 copy to scratch slow for random subsets of particles

Andrea Nans

Tue, 15 Dec 2020 15:43:28 +0000

62 lines

Relion 3.1.1, intel, cuda 11 startup error

Re: Relion 3.1.1, intel, cuda 11 startup error

Jogl, Gerwald

Thu, 17 Dec 2020 12:30:33 -0500

143 lines

Re: Relion 3.1.1, intel, cuda 11 startup error

Takanori Nakane

Thu, 17 Dec 2020 05:30:25 +0000

54 lines

Relion 3.1.1, intel, cuda 11 startup error

Gerwald Jogl

Thu, 17 Dec 2020 01:51:29 +0000

37 lines

Relion particle symmetry expand for pseudo symmetry

Re: Relion particle symmetry expand for pseudo symmetry

Lora Sinha

Tue, 8 Dec 2020 19:12:59 -0800

77 lines

Re: Relion particle symmetry expand for pseudo symmetry

Takanori Nakane

Tue, 8 Dec 2020 21:32:58 +0000

30 lines

Relion particle symmetry expand for pseudo symmetry

Lora Sinha

Tue, 8 Dec 2020 13:31:39 -0800

39 lines

relion-3.1 installation error

Dieter Blaas

Tue, 1 Dec 2020 23:31:02 +0100

444 lines

Takanori Nakane

Tue, 1 Dec 2020 20:40:41 +0000

305 lines

Dieter Blaas

Tue, 1 Dec 2020 19:21:39 +0100

391 lines

Takanori Nakane

Tue, 1 Dec 2020 15:48:22 +0000

239 lines

Takanori Nakane

Tue, 1 Dec 2020 15:35:34 +0000

208 lines

Dieter Blaas

Tue, 1 Dec 2020 16:31:14 +0100

670 lines

Takanori Nakane

Tue, 1 Dec 2020 14:20:58 +0000

178 lines

relion-3.1 installation error

Takanori Nakane

Tue, 1 Dec 2020 10:40:21 +0000

92 lines

Dieter Blaas

Tue, 1 Dec 2020 08:40:15 +0100

74 lines

Reminder - Registration for CCP4 Virtual Study Weekend 2021 is now live

McIntyre, Karen (STFC,RAL,SC)

Mon, 21 Dec 2020 11:31:10 +0000

750 lines

Reminder - Registration for CCP4 Virtual Study Weekend 2021 is now live

McIntyre, Karen (STFC,RAL,SC)

Tue, 15 Dec 2020 10:17:09 +0000

713 lines

Requesting the Information regarding experience of Procuring Workstation from Exxactcorp.com and or Singleparticl.com

Rajiv Ranjan Singh

Thu, 24 Dec 2020 13:17:33 +0900

67 lines

running Relion within ccpem

Re: running Relion within ccpem

Takanori Nakane

Tue, 29 Dec 2020 20:57:37 +0000

138 lines

Re: running Relion within ccpem

Joshua Lobo

Tue, 29 Dec 2020 19:46:52 +0000

241 lines

running Relion within ccpem

Schmid, Michael F.

Tue, 29 Dec 2020 17:28:34 +0000

135 lines

sidesplitter error

Hiroko Takazaki

Fri, 25 Dec 2020 11:13:00 +0900

1142 lines

Takanori Nakane

Thu, 24 Dec 2020 10:59:39 +0000

660 lines

Yongchan Lee

Thu, 24 Dec 2020 10:33:48 +0100

573 lines

Hiroko Takazaki

Thu, 24 Dec 2020 12:17:32 +0900

1025 lines

Submission Deadline on December 14th

Takanori Nakane

Wed, 23 Dec 2020 11:32:26 +0000

264 lines

sidesplitter error

Hiroko Takazaki

Wed, 23 Dec 2020 20:03:09 +0900

382 lines

Tessa Van Grack

Mon, 7 Dec 2020 13:51:51 -0700

127 lines

Testing multiple box sizes in Bayesian polishing?

Re: Testing multiple box sizes in Bayesian polishing?

Takanori Nakane

Wed, 30 Dec 2020 16:15:36 +0000

42 lines

Testing multiple box sizes in Bayesian polishing?

Oliver Clarke

Wed, 30 Dec 2020 10:28:31 -0500

28 lines

trouble with reprocessing a negative stain dataset in Relion

Re: trouble with reprocessing a negative stain dataset in Relion

Takanori Nakane

Wed, 2 Dec 2020 08:32:15 +0000

114 lines

Re: trouble with reprocessing a negative stain dataset in Relion

Dokland, Terje

Wed, 2 Dec 2020 00:19:21 +0000

278 lines

Re: trouble with reprocessing a negative stain dataset in Relion

Joshua Lobo

Tue, 1 Dec 2020 23:13:19 +0000

181 lines

trouble with reprocessing a negative stain dataset in Relion

Sheena Vasquez

Tue, 1 Dec 2020 22:43:44 +0000

63 lines

Unexpected results from 3D refinement

Re: Unexpected results from 3D refinement

J. Rheinberger

Wed, 23 Dec 2020 11:23:37 +0100

85 lines

Re: Unexpected results from 3D refinement

Takanori Nakane

Wed, 23 Dec 2020 10:15:26 +0000

55 lines

Re: Unexpected results from 3D refinement

J. Rheinberger

Wed, 23 Dec 2020 10:37:05 +0100

254 lines

Unusual averages with Relion 3.1

Sonya James

Wed, 2 Dec 2020 12:57:48 +0000

2038 lines

[ccp4bb] Job opportunities with Oxfords Biomedical Research Computing facility

Fwd: [ccp4bb] Job opportunities with Oxfords Biomedical Research Computing facility

Pranav Shah

Tue, 22 Dec 2020 17:38:33 +0000

136 lines

[ccpem] CoVal: Mapping SARS-Cov2 genome mutations

Fwd: [ccpem] CoVal: Mapping SARS-Cov2 genome mutations

Joseph, Agnel Praveen (STFC,RAL,SC)

Thu, 24 Dec 2020 11:09:41 +0000

1371 lines

[EXTERNAL] [ccpem] Problem with CtfRef

Alfredo Jose Florez Ariza

Wed, 9 Dec 2020 00:47:48 -0500

526 lines

Takanori Nakane

Wed, 9 Dec 2020 05:36:21 +0000

160 lines

Alfredo Jose Florez Ariza

Wed, 9 Dec 2020 00:18:08 -0500

488 lines