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February 2016

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Subject	From	Date	Size
[git/dials] master: Bugfix (6de7dda)	DIALS Commit via DLS Jenkins	Mon, 29 Feb 2016 14:45:04 -0800	104 lines
[git/dials] master: Enable indexer_known_orientation for stills (eed1b7c)	DIALS Commit via DLS Jenkins	Mon, 29 Feb 2016 14:37:23 -0800	183 lines
[git/dials] master: fix crash when running dials.image_viewer with .cbf image (5c88bbb)	DIALS Commit via DLS Jenkins	Mon, 29 Feb 2016 18:55:57 +0000	101 lines
[git/dials] master: fix crash when running dials.image_viewer with .cbf image as parameter (59f9119)	DIALS Commit via DLS Jenkins	Mon, 29 Feb 2016 18:09:31 +0000	82 lines
[git/dials] master: Better error message (8348b3d)	DIALS Commit via DLS Jenkins	Mon, 29 Feb 2016 10:07:57 -0800	80 lines
[git/dials] master: don't attempt to plot zero-length array (27473e6)	DIALS Commit via DLS Jenkins	Mon, 29 Feb 2016 15:49:44 +0000	88 lines
[git/dials] master: use micron not nanometre tolerance for the detector origin (44d0ada)	DIALS Commit via DLS Jenkins	Mon, 29 Feb 2016 09:59:29 +0000	78 lines
[git/dials] master: fix scan extrapolation for image ranges not starting at 1 (5a6bcdc)	DIALS Commit via DLS Jenkins	Mon, 29 Feb 2016 08:55:09 +0000	126 lines
[git/dials_scratch] master: Script for plotting detector residuals (9402632)	DIALS Scratch Commit via DLS Jenkins	Fri, 26 Feb 2016 09:19:01 -0800	529 lines
[git/dials] master: remove cruft (de3153c)	DIALS Commit via DLS Jenkins	Fri, 26 Feb 2016 08:42:38 +0000	72 lines
[git/dials] master: no newline here (ce45160)	DIALS Commit via DLS Jenkins	Fri, 26 Feb 2016 08:31:33 +0000	71 lines
[git/dials_scratch] master: Jiffy script to index strong.pickle using refined_experiments.json. Useful for cspad metrology. (cb66415)	DIALS Scratch Commit via DLS Jenkins	Thu, 25 Feb 2016 07:18:06 -0800	235 lines
[git/dials] master: remove use_all_reflections from various tutorials. It is clear that many tutorials are out of date! (9021331)	DIALS Commit via DLS Jenkins	Thu, 25 Feb 2016 13:23:55 +0000	440 lines
[git/dials] master: Don't need use_all_reflections at all now. That's implicit unless reflections_per_degree or maximum_sample_size are set. Tutorials need updating... (156dd86)	DIALS Commit via DLS Jenkins	Thu, 25 Feb 2016 13:11:57 +0000	353 lines
[git/dials] master: override some default refinement parameters in indexing (327b530)	DIALS Commit via DLS Jenkins	Thu, 25 Feb 2016 12:33:54 +0000	91 lines
[git/dials] master: use_all_reflections=true now the default (f6af05b)	DIALS Commit via DLS Jenkins	Thu, 25 Feb 2016 12:18:09 +0000	147 lines
[git/dials] master: I'm a function and have no sense of self (30fcb71)	DIALS Commit via DLS Jenkins	Thu, 25 Feb 2016 11:48:14 +0000	76 lines
[git/dials] master: add count of used_in_refinement flag to 3 tests (0f8c808)	DIALS Commit via DLS Jenkins	Thu, 25 Feb 2016 11:06:06 +0000	173 lines
[git/dials] master: bug fix: was still accumulating flags, unset first (f1ebdec)	DIALS Commit via DLS Jenkins	Thu, 25 Feb 2016 11:03:36 +0000	94 lines
[git/dials] master: partial revert of 4adc1ac9967ab3df956e4e8b9e1c6d937d6be9ee: still need to copy used_in_refinement flagover to the output reflections (bd7c437)	DIALS Commit via DLS Jenkins	Thu, 25 Feb 2016 10:00:50 +0000	96 lines
[git/dials] master: revert 816dc2c2: this is supposed to be a loop over imagesets not experiments (4dfacb2)	DIALS Commit via DLS Jenkins	Thu, 25 Feb 2016 09:48:44 +0000	101 lines
[git/dials] master: Allow for experiments without imagesets (816dc2c)	DIALS Commit via DLS Jenkins	Wed, 24 Feb 2016 16:07:30 -0800	99 lines
[git/dials] master: Handle wildcard arguments passed into dials.import on the command line (enables *.cbf etc to work on windows). Also did a clean clutter. Fixes #84 (6662f0c)	DIALS Commit via DLS Jenkins	Wed, 24 Feb 2016 18:04:01 +0000	102 lines
[git/dials] master: Putative fix for wrong direction normal; based on back of envelope trig; should be correct (8e67017)	DIALS Commit via DLS Jenkins	Wed, 24 Feb 2016 15:21:48 +0000	79 lines
[git/dials] master: Fixed a bug (acf27a9)	DIALS Commit via DLS Jenkins	Wed, 24 Feb 2016 11:19:25 +0000	121 lines
[git/dials] master: Add checks for negative values (486cc82)	DIALS Commit via DLS Jenkins	Wed, 24 Feb 2016 11:07:52 +0000	83 lines
[git/dials_scratch] master: Add reflection counts per panel (a430ec4)	DIALS Scratch Commit via DLS Jenkins	Tue, 23 Feb 2016 17:13:37 -0800	295 lines
[git/dials] master: Do not attempt to read empty hint files (05fe4a5)	DIALS Commit via DLS Jenkins	Tue, 23 Feb 2016 14:51:10 +0000	80 lines
[git/dials] master: Allow command to fail, eg. when run against GUI programs on a headless machine. Fixes #74 (7a03df3)	DIALS Commit via DLS Jenkins	Tue, 23 Feb 2016 14:45:14 +0000	82 lines
[git/dials] master: append -release for versions built from a release-* branch (f56435c)	DIALS Commit via DLS Jenkins	Tue, 23 Feb 2016 14:18:58 +0000	97 lines
[git/dials] master: new command dials.detect_blanks (28bd0ac)	DIALS Commit via DLS Jenkins	Tue, 23 Feb 2016 10:33:39 +0000	658 lines
[git/dials] master: Fix up defaults for stills_indexer. Closes #77. (7975946)	DIALS Commit via DLS Jenkins	Mon, 22 Feb 2016 15:09:05 -0800	289 lines
[git/dials] master: new dials.reindex option reference= to pass reference experiments for reindexing of reflections list to common setting (08c8fbc)	DIALS Commit via DLS Jenkins	Mon, 22 Feb 2016 17:18:38 +0000	280 lines
[git/dials] master: dials.reindex: always re-map reflections to reciprocal space (7e284e7)	DIALS Commit via DLS Jenkins	Mon, 22 Feb 2016 16:49:45 +0000	145 lines
[git/dials] master: safeguard beam centre code in try/except (835db30)	DIALS Commit via DLS Jenkins	Mon, 22 Feb 2016 15:35:05 +0000	124 lines
[git/dials] master: fixes #81 (d63367d)	DIALS Commit via DLS Jenkins	Mon, 22 Feb 2016 14:41:50 +0000	84 lines
[git/dials] master: add option to automagically fix up epochs and exposure times when overriding scan image range (8ced407)	DIALS Commit via DLS Jenkins	Mon, 22 Feb 2016 11:57:13 +0000	141 lines
[git/dials_scratch] master: moved to dials/command_line (a0197bb)	DIALS Scratch Commit via DLS Jenkins	Mon, 22 Feb 2016 11:18:13 +0000	382 lines
[git/dials_scratch] master: moved here from dials (988c6ac)	DIALS Scratch Commit via DLS Jenkins	Mon, 22 Feb 2016 11:18:13 +0000	63 lines
[git/dials] master: dev.dials.plot_detector_shifts moved here from dials_scratch for I23 metrology investigations (7c72af6)	DIALS Commit via DLS Jenkins	Mon, 22 Feb 2016 11:17:02 +0000	390 lines
[git/dials] master: Test for jiffy to get hot pixel coordinates as x, y (495c922)	DIALS Commit via DLS Jenkins	Mon, 22 Feb 2016 10:42:47 +0000	132 lines
[git/dials] master: defensive: cast to str before split() (8575406)	DIALS Commit via DLS Jenkins	Mon, 22 Feb 2016 10:35:18 +0000	81 lines
[git/dials] master: remove bracket characters and the empty string which otherwise will match anything (0433faf)	DIALS Commit via DLS Jenkins	Mon, 22 Feb 2016 09:54:26 +0000	93 lines
[git/dials] master: if a value was processed as an int, do not also process it as a string (250aa84)	DIALS Commit via DLS Jenkins	Mon, 22 Feb 2016 09:41:31 +0000	74 lines
[git/dials] master: tidying up: moved to dials_scratch (71a21c2)	DIALS Commit via DLS Jenkins	Mon, 22 Feb 2016 09:32:37 +0000	67 lines
[git/dials] master: Jiffy to get hot pixel coordinates as x, y (05b8791)	DIALS Commit via DLS Jenkins	Mon, 22 Feb 2016 09:00:25 +0000	104 lines
[git/dials] master: SparseLevMar does not allow multiprocessing because sparse::matrix type currently has no pickle support. nproc==1 is silently enforced. Remove specialized build_up() method as it is no longer needed. SparseLevMar should now support restraints (not yet tested). (2f173f6)	DIALS Commit via DLS Jenkins	Sat, 20 Feb 2016 11:02:32 -0800	248 lines
[git/dials_scratch] master: Change xy and z delta units to microns (e51e22b)	DIALS Scratch Commit via DLS Jenkins	Fri, 19 Feb 2016 12:51:36 -0800	207 lines
[git/dials_scratch] master: Add show_plots parameter (da4aa82)	DIALS Scratch Commit via DLS Jenkins	Fri, 19 Feb 2016 12:38:09 -0800	129 lines
[git/dials_scratch] master: Add tabular output (96db7fe)	DIALS Scratch Commit via DLS Jenkins	Fri, 19 Feb 2016 12:35:41 -0800	208 lines
[git/dials_scratch] master: Add Z angle delta, Delta Z and Delta XY to congruence stats (6d226c3)	DIALS Scratch Commit via DLS Jenkins	Fri, 19 Feb 2016 11:48:15 -0800	165 lines
[git/dials_scratch] master: Add colormap parameter for color-blind users Tidy and comment (5086189)	DIALS Scratch Commit via DLS Jenkins	Fri, 19 Feb 2016 11:16:04 -0800	401 lines
[git/dials_scratch] master: Add titles, units and colorbar (706adcb)	DIALS Scratch Commit via DLS Jenkins	Fri, 19 Feb 2016 10:38:23 -0800	168 lines
[git/dials_scratch] master: Refactor plotting into a function. Center text. (e7a5ad8)	DIALS Scratch Commit via DLS Jenkins	Fri, 19 Feb 2016 10:16:46 -0800	137 lines
[git/dials] master: this doesn't actually do anything (ccfb7e6)	DIALS Commit via DLS Jenkins	Fri, 19 Feb 2016 13:12:57 +0000	75 lines
[git/dials_scratch] master: First pass at code to measure congruence of two independent refinement jobs of detector metrology (2a48f6a)	DIALS Scratch Commit via DLS Jenkins	Thu, 18 Feb 2016 17:45:54 -0800	389 lines
[git/dials] master: check for bash, not for non-bash. fixes #78, well spotted. (3c29133)	DIALS Commit via DLS Jenkins	Thu, 18 Feb 2016 08:20:38 +0000	79 lines
[git/dials] master: check for bash, not for non-bash. fixes #78, well spotted. (5a9eafc)	DIALS Commit via DLS Jenkins	Thu, 18 Feb 2016 08:15:09 +0000	80 lines
[git/dials] master: report median and modal unit cells (48bd35e)	DIALS Commit via DLS Jenkins	Wed, 17 Feb 2016 16:27:39 +0000	86 lines
[git/dials] master: print top 10 images according to #indexed (a1e3348)	DIALS Commit via DLS Jenkins	Wed, 17 Feb 2016 16:27:21 +0000	124 lines
[git/dials] master: include # and fraction indexed in stats table (344f58c)	DIALS Commit via DLS Jenkins	Wed, 17 Feb 2016 16:26:45 +0000	167 lines
[git/dials] master: recalculate fraction_indexed rather than taking from input json (40826f3)	DIALS Commit via DLS Jenkins	Wed, 17 Feb 2016 16:25:20 +0000	105 lines
[git/dials] master: fix for fraction_indexed reported by server/client (50358fe)	DIALS Commit via DLS Jenkins	Wed, 17 Feb 2016 16:24:13 +0000	80 lines
[git/dials] master: add script to generate plots based on json output from dials.find_spots_client (8dde7eb)	DIALS Commit via DLS Jenkins	Wed, 17 Feb 2016 13:00:26 +0000	1182 lines
[git/dials] master: moved calculation to dxtbx crystal_model (3961739)	DIALS Commit via DLS Jenkins	Wed, 17 Feb 2016 12:57:04 +0000	387 lines
[git/dials] master: script to filter integrated reflections that are recorded during the detector dead time (483b68f)	DIALS Commit via DLS Jenkins	Wed, 17 Feb 2016 12:50:37 +0000	286 lines
[git/dials] master: oops, actually need to do what the message says (1eacbc7)	DIALS Commit via DLS Jenkins	Wed, 17 Feb 2016 12:08:12 +0000	75 lines
[git/dials] master: Move matrix_inverse_error_propagation and its test to scitbx/math for use within dxtbx/model/crystal.py (93901a9)	DIALS Commit via DLS Jenkins	Wed, 17 Feb 2016 12:01:09 +0000	687 lines
[git/dials] master: Add basic test of CS-PAD refinement at the sensor level jointly with 300 crystals. Requires SparseLevMar engine to be available (748fb3d)	DIALS Commit via DLS Jenkins	Wed, 17 Feb 2016 11:28:21 +0000	231 lines
[git/dials] master: reset centroid_outlier flags on input reflections otherwise outlier rejection becomes cumulative over macrocycles, which is not the intended behaviour (63e1dc5)	DIALS Commit via DLS Jenkins	Wed, 17 Feb 2016 11:03:33 +0000	96 lines
[git/dials] master: from __future__ import division (6cefadb)	DIALS Commit via DLS Jenkins	Tue, 16 Feb 2016 17:55:33 +0000	140 lines
[git/dials_scratch] master: option to pass in position of each image as text file (32c3a65)	DIALS Scratch Commit via DLS Jenkins	Tue, 16 Feb 2016 17:00:38 +0000	397 lines
[git/dials] master: Ensure MTZ summary gets logged (240fcbe)	DIALS Commit via DLS Jenkins	Tue, 16 Feb 2016 16:27:30 +0000	80 lines
[git/dials] master: More convenient interface for parameter fixing. (25fbb63)	DIALS Commit via DLS Jenkins	Tue, 16 Feb 2016 15:34:55 +0000	473 lines
[git/dials] master: For stills, reset imagesweeps to imagesets, discarding gonimeter and scan (339ece4)	DIALS Commit via DLS Jenkins	Mon, 15 Feb 2016 20:00:12 -0800	104 lines
[git/dials_scratch] master: more updates: various histograms and heatmaps (a51ffdc)	DIALS Scratch Commit via DLS Jenkins	Mon, 15 Feb 2016 17:49:00 +0000	625 lines
[git/dials] master: better fix: fewer deepcopy operations (a3bf05a)	DIALS Commit via DLS Jenkins	Mon, 15 Feb 2016 15:43:18 +0000	99 lines
[git/dials] master: print_panel_rmsd_table for multiple detectors, if present (ec87c6d)	DIALS Commit via DLS Jenkins	Mon, 15 Feb 2016 15:28:06 +0000	346 lines
[git/dials] master: Output geometry of all models to the debug log, use ordinal numbering (c295c38)	DIALS Commit via DLS Jenkins	Mon, 15 Feb 2016 15:27:22 +0000	199 lines
[git/dials] master: fix: crystal_ids no longer exists (fb516b4)	DIALS Commit via DLS Jenkins	Mon, 15 Feb 2016 15:25:37 +0000	80 lines
[git/dials] master: replacement for deleted methods (402164b)	DIALS Commit via DLS Jenkins	Mon, 15 Feb 2016 15:24:49 +0000	96 lines
[git/dials] master: Tidying: remove RefinerFactory.from_parameters_data_models, remove Refiner methods get_beam, get_crystal, get_crystals, get_detector, get_goniometer, get_scan. Changed Refiner.__init__ so that crystal_ids is not longer needed (5ddf015)	DIALS Commit via DLS Jenkins	Mon, 15 Feb 2016 15:24:13 +0000	806 lines
[git/dials] master: helper function to convert integers to ordinal number strings (03a59ba)	DIALS Commit via DLS Jenkins	Mon, 15 Feb 2016 14:38:32 +0000	111 lines
[git/dials] master: Use 1-based indexing for labelling models and parameterisations in logs. There are not necessarily as many of these as there are unique id values in the reflection table, so there is no need to use 0-based indexing for them. (d058307)	DIALS Commit via DLS Jenkins	Mon, 15 Feb 2016 14:14:54 +0000	809 lines
[git/dials] master: as_string() not as_std_string() (09198e8)	DIALS Commit via DLS Jenkins	Mon, 15 Feb 2016 09:04:40 +0000	75 lines
[git/dials] master: Better error message for stills indexer when requiring indexing.refinement_protocol.n_macro_cycles==1. (085eb08)	DIALS Commit via DLS Jenkins	Sun, 14 Feb 2016 09:29:28 -0800	106 lines
[git/dials] master: Fix windows compilation issues. Thanks @oeffner. (09864ee)	DIALS Commit via DLS Jenkins	Sat, 13 Feb 2016 19:10:20 -0800	290 lines
[git/dials] master: optionally pass permutation and limit n_rows in print_table (5cdfa7a)	DIALS Commit via DLS Jenkins	Fri, 12 Feb 2016 17:33:45 +0000	177 lines
[git/dials_scratch] master: print table of top 10 images sorted by number of spots (4c725ea)	DIALS Scratch Commit via DLS Jenkins	Fri, 12 Feb 2016 17:33:33 +0000	109 lines
[git/dials_scratch] master: experiment with contour plot (c3d0376)	DIALS Scratch Commit via DLS Jenkins	Fri, 12 Feb 2016 17:28:57 +0000	133 lines
[git/dials_scratch] master: now actually plot all crystals (32f5cc3)	DIALS Scratch Commit via DLS Jenkins	Fri, 12 Feb 2016 15:15:24 +0000	165 lines
[git/dials] master: Test scan-varying multi-panel refinement (b1d6a78)	DIALS Commit via DLS Jenkins	Fri, 12 Feb 2016 14:49:54 +0000	276 lines
[git/dials_scratch] master: collect image names (d3e28fd)	DIALS Scratch Commit via DLS Jenkins	Fri, 12 Feb 2016 14:35:19 +0000	78 lines
[git/dials] master: refactor out plotting code for stereographic projections (b3cde01)	DIALS Commit via DLS Jenkins	Fri, 12 Feb 2016 14:33:40 +0000	310 lines
[git/dials_scratch] master: optionally plot stereographic projections of principal crystal axes (b2074a8)	DIALS Scratch Commit via DLS Jenkins	Fri, 12 Feb 2016 14:33:00 +0000	238 lines
[git/dials_scratch] master: fix y=x lines (b376fbf)	DIALS Scratch Commit via DLS Jenkins	Fri, 12 Feb 2016 12:36:44 +0000	120 lines
[git/dials_scratch] master: fast/slow directions different for portrait/landscape grids (at DLS); only plot n_indexed related plots if some indexing results (27d9ae9)	DIALS Scratch Commit via DLS Jenkins	Fri, 12 Feb 2016 09:26:57 +0000	418 lines
[git/dials_scratch] master: option to plot grid images; comparison plots of various resolution limits (83b0467)	DIALS Scratch Commit via DLS Jenkins	Thu, 11 Feb 2016 21:58:41 +0000	426 lines
[git/dials] master: scopes wrong way round for correct diffs (a63fd38)	DIALS Commit via DLS Jenkins	Thu, 11 Feb 2016 17:31:13 +0000	115 lines
[git/dials] master: print timing information from server (5334320)	DIALS Commit via DLS Jenkins	Thu, 11 Feb 2016 16:59:05 +0000	136 lines
[git/dials] master: fix integrate=true option of server/client; server prints out modified parameters at each step (d706aa8)	DIALS Commit via DLS Jenkins	Thu, 11 Feb 2016 16:59:05 +0000	522 lines
[git/dials] master: Wrapper for CrystalOrientationCompose with accessors that return matrix.sqr values (d346bbe)	DIALS Commit via DLS Jenkins	Thu, 11 Feb 2016 14:32:50 +0000	114 lines
[git/dials] master: Use CrystalOrientationCompose for small but significant time savings, especially for many-multi-crystal refinements (6d7cd98)	DIALS Commit via DLS Jenkins	Thu, 11 Feb 2016 14:32:50 +0000	209 lines
[git/dials] master: C++ CrystalOrientationCompose helper class (d3c43e4)	DIALS Commit via DLS Jenkins	Thu, 11 Feb 2016 14:32:49 +0000	359 lines
[git/dials] master: backwards compatibility for older pickle files (ad160a8)	DIALS Commit via DLS Jenkins	Thu, 11 Feb 2016 10:32:43 +0000	81 lines
[git/dials_scratch] master: update script (e4a3a26)	DIALS Scratch Commit via DLS Jenkins	Thu, 11 Feb 2016 10:14:18 +0000	210 lines
[git/dials] master: Put same input filtering as in integration (e026cd6)	DIALS Commit via DLS Jenkins	Thu, 11 Feb 2016 10:01:42 +0000	237 lines
[git/dials] master: fix client for single image mode (d9bf4e9)	DIALS Commit via DLS Jenkins	Wed, 10 Feb 2016 18:06:04 +0000	263 lines
[git/dials] master: communicate results server -> client via json strings; optionally output results as json file from client (dbe4191)	DIALS Commit via DLS Jenkins	Wed, 10 Feb 2016 16:59:31 +0000	553 lines
[git/dials] master: dials.find_spots_server/client: new option indexing_min_spots=10 (ff198cd)	DIALS Commit via DLS Jenkins	Wed, 10 Feb 2016 16:59:31 +0000	108 lines
[git/dials] master: should have been part of 828b726ab0c2855a1290c99bfdb5834daeb2b208 (e9dbe0d)	DIALS Commit via DLS Jenkins	Wed, 10 Feb 2016 16:10:29 +0000	100 lines
[git/dials] master: normalize() for safety. Still a bit better than 2* faster. (c4b5e8d)	DIALS Commit via DLS Jenkins	Wed, 10 Feb 2016 15:48:10 +0000	76 lines
[git/dials] master: C++ version of dR_from_axis_and_angle (09905b3)	DIALS Commit via DLS Jenkins	Wed, 10 Feb 2016 15:48:10 +0000	329 lines
[git/dials] master: Use C++ version of dR_from_axis_and_angle (about 2* faster than the old code, renamed dR_from_axis_and_angle_py) (2996bfb)	DIALS Commit via DLS Jenkins	Wed, 10 Feb 2016 15:48:10 +0000	118 lines
[git/dials] master: don't attempt to print max resolution if > 1 panel as not meaningful on a per-panel basis; only if panel intersects with beam (7552354)	DIALS Commit via DLS Jenkins	Wed, 10 Feb 2016 15:40:52 +0000	218 lines
[git/dials] master: Ignore RuntimeError adding lovely things to output (eed33f9)	DIALS Commit via DLS Jenkins	Wed, 10 Feb 2016 15:29:41 +0000	207 lines
[git/dials] master: is 3* faster, so not 'slightly' (cb38ca0)	DIALS Commit via DLS Jenkins	Wed, 10 Feb 2016 12:24:55 +0000	76 lines
[git/dials] master: delete unused functions and other tidying (136d54c)	DIALS Commit via DLS Jenkins	Wed, 10 Feb 2016 12:15:08 +0000	258 lines
[git/dials] master: tidying: move some C++ sources into most relevant subdirectories of refinement/ (db6055e)	DIALS Commit via DLS Jenkins	Wed, 10 Feb 2016 11:57:23 +0000	218 lines
[git/dials] master: comment (ca07a52)	DIALS Commit via DLS Jenkins	Wed, 10 Feb 2016 11:52:41 +0000	76 lines
[git/dials] master: fix tests (c596540)	DIALS Commit via DLS Jenkins	Wed, 10 Feb 2016 11:22:51 +0000	298 lines
[git/dials] master: filter out overlapping bounding boxes before max_cell estimation by default; reorganise related parameters under new max_cell_estimation scope (ac2b654)	DIALS Commit via DLS Jenkins	Wed, 10 Feb 2016 10:52:17 +0000	360 lines
[git/dials] master: Fixed typo and test (5fd6f79)	DIALS Commit via DLS Jenkins	Wed, 10 Feb 2016 09:56:06 +0000	199 lines
[git/dials] master: Make experiments optional in find_spots and add a border option (250c374)	DIALS Commit via DLS Jenkins	Tue, 9 Feb 2016 18:17:06 +0000	694 lines
[git/dials] master: allow apply_to_all option for tie_to_target unit cell restraints (not just tie_to_group) (5b88928)	DIALS Commit via DLS Jenkins	Tue, 9 Feb 2016 12:35:19 +0000	125 lines
[git/dials] master: Keep track of null derivatives of the multi-panel detector parameterisation and don't expand these out to explicit 0.0 values in dX/dp vectors. This better recognises the sparsity of multi-panel refinement problems. The runtime of Nick's benchmarking test case (using SparseLevMar) is reduced by 22% (828b726)	DIALS Commit via DLS Jenkins	Tue, 9 Feb 2016 11:58:30 +0000	364 lines
[git/dials] master: either this needs to be removed or command line completion disabled (8adf7b1)	DIALS Commit via DLS Jenkins	Tue, 9 Feb 2016 10:31:36 +0000	69 lines
[git/dials] master: fix dials.show for integrated pickles (1074811)	DIALS Commit via DLS Jenkins	Tue, 9 Feb 2016 10:07:22 +0000	70 lines
[git/dials] master: remove out-dated maximum_spot_error and maximum_phi_error parameters from indexing (632067d)	DIALS Commit via DLS Jenkins	Mon, 8 Feb 2016 17:14:03 +0000	779 lines
[git/dials] master: fix test (d8a45c7)	DIALS Commit via DLS Jenkins	Mon, 8 Feb 2016 17:12:23 +0000	209 lines
[git/dials] master: Do not attempt to produce histograms for single or fewer images. Fix histogram bar boundaries. Remove explicit scan range and determine it automatically where possible. Don't fall over otherwise. (23cbfcd)	DIALS Commit via DLS Jenkins	Mon, 8 Feb 2016 17:12:03 +0000	289 lines
[git/dials] master: remove out-dated maximum_spot_error and maximum_phi_error parameters from indexing (1250048)	DIALS Commit via DLS Jenkins	Mon, 8 Feb 2016 17:03:06 +0000	779 lines
[git/dials] master: fix bugs introduced by b6351aea4e50a0a43fdad923f61ed6ebf6683f75 (f9c9a58)	DIALS Commit via DLS Jenkins	Mon, 8 Feb 2016 16:27:05 +0000	138 lines
[git/dials] master: Added a function to compute the phi range of each reflection (74ac0d9)	DIALS Commit via DLS Jenkins	Mon, 8 Feb 2016 14:49:19 +0000	209 lines
[git/dials] master: fix indentation (13eb47e)	DIALS Commit via DLS Jenkins	Mon, 8 Feb 2016 12:09:23 +0000	84 lines
[git/dials] master: bug fix: if not present, set imageset_id before max_cell code is called (a667010)	DIALS Commit via DLS Jenkins	Mon, 8 Feb 2016 12:09:23 +0000	161 lines
[git/dials] master: Use scan range information for histogram boundaries, adjust image coordinates (b6351ae)	DIALS Commit via DLS Jenkins	Mon, 8 Feb 2016 11:45:11 +0000	286 lines
[git/dials] master: update histogram test (c353639)	DIALS Commit via DLS Jenkins	Mon, 8 Feb 2016 11:45:11 +0000	227 lines
[git/dials] master: bug fix for max cell estimation for multi-sweep indexing: carry out NN analysis for each imageset independently (would return excessively large max_cell estimate if identical scans) (87fc56d)	DIALS Commit via DLS Jenkins	Mon, 8 Feb 2016 10:16:32 +0000	148 lines
[git/dials] master: bug fix for multi-sweep indexing: need to re-index reflections for all imagesets, not just the first one (87de84e)	DIALS Commit via DLS Jenkins	Mon, 8 Feb 2016 09:33:22 +0000	124 lines
[git/dials] master: Better error message for stills_indexer if no candidates found. Remove debugging statement. (20c8340)	DIALS Commit via DLS Jenkins	Fri, 5 Feb 2016 11:06:43 -0800	102 lines
[git/dials] master: Remove some hardcode values in refinement for stills indexing (7446c2d)	DIALS Commit via DLS Jenkins	Fri, 5 Feb 2016 10:59:39 -0800	128 lines
[git/dials] master: start counting at 1 (eed3cee)	DIALS Commit via DLS Jenkins	Fri, 5 Feb 2016 15:24:54 +0000	76 lines
[git/dials] master: correct plot title (f4001a4)	DIALS Commit via DLS Jenkins	Fri, 5 Feb 2016 14:09:45 +0000	77 lines
[git/dials] master: dials.stills_process: parallelize the import step if providing > 1 files (e8de5c7)	DIALS Commit via DLS Jenkins	Fri, 5 Feb 2016 05:35:37 -0800	106 lines
[git/dials] master: Refactor dials.stills_process's import step. Should now work with single file imagesets (like Eiger or SACLA). (7effea1)	DIALS Commit via DLS Jenkins	Fri, 5 Feb 2016 05:15:44 -0800	308 lines
[git/dials] master: fixes #72 (5178f46)	DIALS Commit via DLS Jenkins	Fri, 5 Feb 2016 10:33:01 +0000	80 lines
Test message	David Waterman	Fri, 5 Feb 2016 07:26:55 +0000	11 lines
[git/dials] master: Multiprocessing script for handling still images. (684239e)	DIALS Commit via DLS Jenkins	Thu, 4 Feb 2016 19:13:27 -0800	1059 lines
[git/dials] master: Add parameter stills.indexer, allow user to override whether the stills or sweeps indexer is used. (6f38d61)	DIALS Commit via DLS Jenkins	Thu, 4 Feb 2016 15:35:21 -0800	181 lines
[git/dials] master: @rjgildea I couldn't think of any situation where you'd want the result of Refiner.predict_for_indexed() not have the used_in_refinement flags set, so now it is done within that function, and you don't need a separate call to Refiner.selection_used_for_refinement() to find out which reflections were used (4adc1ac)	DIALS Commit via DLS Jenkins	Thu, 4 Feb 2016 16:49:05 +0000	140 lines
[git/dials] master: test gradients of the MeanUnitCellTie class (8f38646)	DIALS Commit via DLS Jenkins	Thu, 4 Feb 2016 16:49:05 +0000	294 lines
[git/dials] master: enable ties of a group of cell parameters to their mean (f9001ac)	DIALS Commit via DLS Jenkins	Thu, 4 Feb 2016 16:49:05 +0000	120 lines
[git/dials] master: Only restrain one of a pair of cell dimensions if these are constrained to be equal (3984a59)	DIALS Commit via DLS Jenkins	Thu, 4 Feb 2016 16:49:05 +0000	207 lines
[git/dials] master: MeanUnitCellTie class (f282a1d)	DIALS Commit via DLS Jenkins	Thu, 4 Feb 2016 16:49:05 +0000	712 lines
[git/dials] master: remove attribute that is no longer used anywhere (c436b26)	DIALS Commit via DLS Jenkins	Thu, 4 Feb 2016 16:49:05 +0000	74 lines
[git/dials] master: enable the MeanUnitCellTie class. The bookkeeping is horrendous (e81027c)	DIALS Commit via DLS Jenkins	Thu, 4 Feb 2016 16:49:05 +0000	441 lines
[git/dials] master: add ascii plot of per-image spot count to dials.find_spots output (dbc5be2)	DIALS Commit via DLS Jenkins	Thu, 4 Feb 2016 12:10:49 +0000	162 lines
[git/dials] master: separate projection code from plotting code (a3aac65)	DIALS Commit via DLS Jenkins	Wed, 3 Feb 2016 16:41:23 +0000	120 lines
[git/dials] master: dials.rl_png: optionally specify figure size (d4589b9)	DIALS Commit via DLS Jenkins	Wed, 3 Feb 2016 14:09:39 +0000	94 lines
[git/dials] master: bug fix (32698b8)	DIALS Commit via DLS Jenkins	Wed, 3 Feb 2016 13:43:16 +0000	73 lines
[git/dials] master: Do not update minimum covering sphere (42b75d6)	DIALS Commit via DLS Jenkins	Wed, 3 Feb 2016 11:46:35 +0000	236 lines
[git/dials] master: bug fix (41d4b9b)	DIALS Commit via DLS Jenkins	Wed, 3 Feb 2016 10:54:28 +0000	94 lines
[git/dials] master: dials.rl_png: plot planes perpendicular to beam, rotation axis and their cross product; run DPS and plot planes perpendicular to top soluions (2cb5dda)	DIALS Commit via DLS Jenkins	Wed, 3 Feb 2016 10:42:42 +0000	438 lines
[git/dials] master: Add keys from stills indexing to dials.show (799bca1)	DIALS Commit via DLS Jenkins	Tue, 2 Feb 2016 09:54:14 -0800	115 lines
[git/dials] master: dials.rl_png: if multiple lattices generate a, b, c orientation images for each lattice (6c149f0)	DIALS Commit via DLS Jenkins	Tue, 2 Feb 2016 17:09:11 +0000	138 lines
[git/dials] master: dials.rl_png: fix white -> black conversion; respect marker_size parameter (2b9e0e7)	DIALS Commit via DLS Jenkins	Tue, 2 Feb 2016 14:24:58 +0000	138 lines
[git/dials] master: refactor rlv code to make reusable outside wx/opengl dependencies; add dials.rl_png command (ae54340)	DIALS Commit via DLS Jenkins	Tue, 2 Feb 2016 14:02:28 +0000	705 lines
[git/dials] master: bug fix (f36c7e9)	DIALS Commit via DLS Jenkins	Tue, 2 Feb 2016 13:57:24 +0000	77 lines
[git/dials] master: toggle display of outliers/inliers in reciprocal_lattice_viewer (e093e1b)	DIALS Commit via DLS Jenkins	Tue, 2 Feb 2016 12:29:47 +0000	248 lines
[git/dials] master: use refiner.predict_for_indexed() to obtain predictions, entering flags and centroid_outlier flags; use refiner.selection_used_for_refinement() instead of refiner.get_matches()['iobs'] (f9aebd5)	DIALS Commit via DLS Jenkins	Tue, 2 Feb 2016 12:15:16 +0000	193 lines
[git/dials] master: Allow use of datablock as input (61c6b55)	DIALS Commit via DLS Jenkins	Mon, 1 Feb 2016 18:25:38 +0000	205 lines
[git/dials] master: Added radial average program and did a clean clutter (0f7eda6)	DIALS Commit via DLS Jenkins	Mon, 1 Feb 2016 18:14:06 +0000	751 lines

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