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[git/dials_scratch] master: Added some more output (21e8dd8)
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Fri, 30 Jun 2017 10:47:09 +0100 |
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[git/dials_scratch] master: Output image model as pickle and png (8497b74)
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Fri, 30 Jun 2017 10:47:09 +0100 |
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[git/dials_scratch] master: DId a clean clutter and added command line script (dc6a712)
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Fri, 30 Jun 2017 10:47:09 +0100 |
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[git/dials_scratch] master: Added some more output (8ce8a94)
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Fri, 30 Jun 2017 10:47:09 +0100 |
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[git/dials_scratch] master: Use reletive likelihood and add some boiler plate stuff to try and get in wavelength spread (8511197)
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Fri, 30 Jun 2017 10:47:09 +0100 |
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[git/dials_scratch] master: Tidied up and added crystal parameter optimization (0b52bff)
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Fri, 30 Jun 2017 10:47:09 +0100 |
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[git/dials_scratch] master: Better name... (a1d422b)
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Fri, 30 Jun 2017 10:47:09 +0100 |
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[git/dials_scratch] master: messing around with profile modelling (f3733df)
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Fri, 30 Jun 2017 10:47:09 +0100 |
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[git/dials_scratch] master: Removed some old stuff (92e5feb)
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Fri, 30 Jun 2017 10:47:09 +0100 |
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[git/dials] master: Added convenience function (bfd36311)
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Fri, 30 Jun 2017 10:47:07 +0100 |
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[git/dials] master: Fixes #397; add option to split experiments in output to allow scan varying refinement on multi-sweep data (can run through whole process in laminar way now); default do not do this (cace0c91)
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Fri, 30 Jun 2017 07:04:38 +0100 |
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[git/dials] master: dials.reciprocal_lattice_viewer: update for setting sizer and sizes (5d4975f9)
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Thu, 29 Jun 2017 14:46:28 -0700 |
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[git/dials] master: explicitly set logger name as extension module __name__ lose 'dials' prefix (96002e6b)
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Thu, 29 Jun 2017 14:42:30 +0100 |
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[git/dials] master: add labels to plot (86fe7d06)
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Thu, 29 Jun 2017 11:06:09 +0100 |
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[git/dials] master: optionally generate plot for global threshold estimation (ca64d29d)
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Thu, 29 Jun 2017 10:59:49 +0100 |
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[git/dials_scratch] master: standalone command to estimate global threshold (44e09bf)
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Thu, 29 Jun 2017 10:57:12 +0100 |
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[git/dials_scratch] master: compare_best_hkl.py: larger figures (72c2b9b)
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Thu, 29 Jun 2017 10:56:54 +0100 |
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[git/dials_scratch] master: compare_best_hkl.py: set_observation_type_xray_intensity() to fix isigi plot (a6e17fb)
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Thu, 29 Jun 2017 10:56:39 +0100 |
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[git/dials] master: image_viewer: Add missing interface (a443e3a1)
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Wed, 28 Jun 2017 16:48:01 +0100 |
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[git/dials] master: dials.export format=best: automatically determine values for RASTER keyword (c2f4a1e0)
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Wed, 28 Jun 2017 14:00:16 +0100 |
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[git/dials] master: Workaround for wxPython 2.8 (4abcbea3)
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Tue, 27 Jun 2017 09:40:13 -0700 |
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[git/dials] master: Bugfix (0114fe46)
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Tue, 27 Jun 2017 09:08:55 -0700 |
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[git/dials] master: dials.export format=best: print output filenames to logger (7dafd168)
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Tue, 27 Jun 2017 16:32:48 +0100 |
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[git/dials] master: dials.export format=best: compute spot diameter from sigma_b for SEPARATION parameter (5bd46240)
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Tue, 27 Jun 2017 16:32:48 +0100 |
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[git/dials_scratch] master: add more plots to compare_best_hkl (0ef3503)
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Tue, 27 Jun 2017 16:20:25 +0100 |
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[git/dials_scratch] master: +- 60 works nice (9e8f66d)
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Tue, 27 Jun 2017 15:41:47 +0100 |
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[git/dials_scratch] master: In no sense am I looking at strategy calculations (1cf4c9a)
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Tue, 27 Jun 2017 15:05:06 +0100 |
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[git/dials] master: Image viewer: Only update brightness when return hit or focus lost (df875615)
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Tue, 27 Jun 2017 14:08:21 +0100 |
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[git/dials] master: ImageViewer: Remove rstbx.SettingsPanel dependence (07eefad5)
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Tue, 27 Jun 2017 14:04:43 +0100 |
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[git/dials] master: dials.export format=best: add min_partiality option (default=0.1) (ab293110)
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Tue, 27 Jun 2017 13:33:11 +0100 |
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[git/dials] master: Not an error if beam falls between panels. Fixes #394, though beam centre will be reported as (0.0, 0.0) in that case (and can be set to anything else without it having any effect) (e403cc69)
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Tue, 27 Jun 2017 11:28:52 +0100 |
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[git/dials] master: Fixed idials test by exporting partials (487126e4)
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Tue, 27 Jun 2017 09:23:57 +0100 |
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[git/dials] master: Fixed export (015dc862)
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Tue, 27 Jun 2017 09:06:02 +0100 |
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[git/dials] master: Handle case where s1 vector is co-incident with the surface normal (d9277e60)
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Mon, 26 Jun 2017 08:36:43 -0700 |
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[git/dials] master: Enable all pytest tests. Fixes #389 (3ff72c18)
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Mon, 26 Jun 2017 15:31:08 +0100 |
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[git/dials] master: For some datasets the algorithm won't work. Fail gracefully in such cases. Fixes #390 (c87465c7)
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Mon, 26 Jun 2017 14:08:51 +0100 |
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[git/dials] master: Fix out-of-date procrunner tests. Intermediate step for #389 (daeeb11e)
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Mon, 26 Jun 2017 10:05:21 +0100 |
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[git/dials] master: For #388; add scale_partials option; if False and include_partials=True keep_partials=True will export data faithfully; n.b. very sensitive to partiality; #TODO cleanup _partials flags; silly (b376460f)
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Mon, 26 Jun 2017 07:01:20 +0100 |
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[git/dials] master: Clean clutter (e44fb029)
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Sun, 25 Jun 2017 07:04:23 +0100 |
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[git/dials] master: Debugging info for #388; Sorry if no refl (5eb64fe3)
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Sun, 25 Jun 2017 07:03:02 +0100 |
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[git/dials_scratch] master: script to compare best.hkl (c905054)
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Sun, 25 Jun 2017 00:27:08 +0100 |
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[git/dials_scratch] master: nearest_neighbour_analysis: pass max_height_fraction (22b67c7)
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Fri, 23 Jun 2017 10:13:12 -0500 |
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[git/dials] master: nearest_neighbour analysis: expose max_height_fraction via phil parameter (a67fa86e)
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Fri, 23 Jun 2017 10:12:37 -0500 |
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[git/dials] master: correct comment (e244bb68)
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Fri, 23 Jun 2017 15:53:09 +0100 |
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[git/dials] master: Basic test for CentroidAnalyser (40c22212)
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Fri, 23 Jun 2017 15:53:09 +0100 |
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[git/dials] master: Tests for CentroidAnalyser. This shows that automatic interval width determination for #162 is not yet robust or fully understood, so should not yet be made default behaviour (8a8cf11c)
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Fri, 23 Jun 2017 15:53:09 +0100 |
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[git/dials] master: do not calculate periodogram if there are too few values for it to make any sense anyway (d1b0afa3)
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Fri, 23 Jun 2017 15:53:09 +0100 |
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[git/dials] master: Don't calculate the periodogram if the range of residuals is too small for this to be meaningful (ebd70f98)
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Fri, 23 Jun 2017 15:53:09 +0100 |
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[git/dials] master: simplify dials.export command in tutorial (208050d5)
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Thu, 22 Jun 2017 21:08:15 -0500 |
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[git/dials] master: processing in detail tutorial: remove deprecated dials.analyse_output and dials.plot_scan_varying_crystal in preference to dials.report (6cdaf538)
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Thu, 22 Jun 2017 21:08:15 -0500 |
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[git/dials] master: dials.export format=mtz: print hklout filename to output in line with other programs (2280f8fc)
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Thu, 22 Jun 2017 21:08:15 -0500 |
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[git/dials] master: Fix missed phil imports (378fff8a)
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Thu, 22 Jun 2017 09:44:56 +0100 |
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[git/dials] master: Move the dials.phil parser into utilities (33691a11)
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Wed, 21 Jun 2017 18:25:32 +0100 |
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[git/dials] master: explicitly set interval_width_degrees in this test in anticipation of the change of default from 36.0 to Auto (a8a8b1e7)
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Wed, 21 Jun 2017 16:29:11 +0100 |
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[git/dials] master: revert to pngmath in hope it fixes jenkins build of documentation (ea46a3e3)
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Wed, 21 Jun 2017 09:09:23 -0500 |
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[git/dials] master: Fix test following heuristic change in 224b10daa (8004bdf6)
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Wed, 21 Jun 2017 14:42:10 +0100 |
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[git/dials] master: Work on #162 - Adjust heuristic for automatic scan-varying interval width. Add new option debug_centroid_analysis=True to dials.refine to write out centroid_analysis_reflections.pickle, which can then be passed to dev.dials.plot_centroid_analysis to investigate the choice of interval width (224b10da)
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Wed, 21 Jun 2017 14:19:30 +0100 |
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[git/dials] master: dials.export instructions under Export heading (3526df9c)
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Wed, 21 Jun 2017 10:49:38 +0100 |
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[git/dials] master: Updated ML profile fitting stuff (ea677092)
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Wed, 21 Jun 2017 09:31:08 +0100 |
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[git/dials] master: Added ml profile fitting for detector space (64915a49)
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Wed, 21 Jun 2017 09:31:08 +0100 |
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[git/dials] master: Added transform class (9907efb9)
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Wed, 21 Jun 2017 09:31:08 +0100 |
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[git/dials] master: Did a clean clutter (316aafb9)
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Wed, 21 Jun 2017 09:31:08 +0100 |
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[git/dials] master: Added missing files and fixed correlation calculation (f7c7ad53)
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Wed, 21 Jun 2017 09:31:08 +0100 |
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[git/dials] master: Fixed type in comment (e62422ce)
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Wed, 21 Jun 2017 09:31:08 +0100 |
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[git/dials] master: nicer download buttons (368f30c6)
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Wed, 21 Jun 2017 09:09:20 +0100 |
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[git/dials] master: sphinx: use napoleon instead of numpydoc (makes lots of warnings go away) (fdb8d792)
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Tue, 20 Jun 2017 21:52:43 -0500 |
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[git/dials] master: fix sphinx warning (86d07ab8)
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Tue, 20 Jun 2017 21:32:04 -0500 |
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[git/dials] master: address sphinx warnings (6df55bb7)
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Tue, 20 Jun 2017 21:04:31 -0500 |
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[git/dials] master: fix for missing backslashes in windows build documentation (b30f171e)
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Tue, 20 Jun 2017 21:04:31 -0500 |
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[git/dials] master: Phil validation for kapton correction. (6601e37d)
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Tue, 20 Jun 2017 18:00:48 -0700 |
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[git/dials] master: fix test. not sure if << operator will need formatting (1d4fa4b8)
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Tue, 20 Jun 2017 16:49:57 -0700 |
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[git/dials] master: Correct printout of PxMm strategy type (23758fd4)
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Tue, 20 Jun 2017 16:10:31 -0700 |
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[git/dials] master: dials.index: print table of possible solutions to main output instead of debug log (badc464f)
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Tue, 20 Jun 2017 18:01:47 -0500 |
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[git/dials] master: Restrict image_viewer brightness to numbers (d5e9a3fc)
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Tue, 20 Jun 2017 17:45:13 +0100 |
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[git/dials_scratch] master: Commenting out library for the moment (75a6a80)
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Tue, 20 Jun 2017 17:05:20 +0100 |
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[git/dials_scratch] master: Added some stills stuff (85a0935)
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Tue, 20 Jun 2017 16:42:35 +0100 |
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[git/dials_scratch] master: Added some simulation stuff (3fa7506)
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Tue, 20 Jun 2017 16:42:35 +0100 |
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[git/dials] master: Revert "Extra memory usage info for #378 and friends." (c54d36e6)
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Tue, 20 Jun 2017 16:04:52 +0100 |
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[git/dials] master: Don't cache past image data in dials.image_viewer (3e12a24e)
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Tue, 20 Jun 2017 15:50:22 +0100 |
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[git/dials] master: Unbreak test. (f44906a7)
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Mon, 19 Jun 2017 23:58:49 -0700 |
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[git/dials_scratch] master: If mosaicity being provided, use the crystal's mosaic parameters. (93d28ce)
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Mon, 19 Jun 2017 14:38:11 -0700 |
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[git/dials] master: Extra memory usage info for #378 and friends. Run libtbx.python -m pip install guppy (97212bb6)
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Mon, 19 Jun 2017 09:13:33 +0100 |
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[git/dials] master: Fixed the coordinate system issues. (0408e3fc)
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Fri, 16 Jun 2017 14:18:55 -0700 |
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[git/dials] master: Another speed-up possible by skipping within-spot sigma calculation. (5b770dde)
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Fri, 16 Jun 2017 14:18:55 -0700 |
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[git/dials] master: Something screwy with coordinate systems, but this brings corrections back in line with expectations. (a979d9eb)
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Fri, 16 Jun 2017 14:18:55 -0700 |
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[git/dials] master: Initial refactor of kapton worked out with @idyoung. (7c4e3237)
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Fri, 16 Jun 2017 14:18:55 -0700 |
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[git/dials] master: Finished moving things to flex where applicable, and tidied up. (3ca67cb5)
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Fri, 16 Jun 2017 14:18:55 -0700 |
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[git/dials] master: Switch from debugging to main version. (6241d885)
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Thu, 15 Jun 2017 13:30:21 -0700 |
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[git/dials] master: Print memory usage to aid in debugging cctbx/cctbx_project#42 (e897873f)
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Thu, 15 Jun 2017 15:36:46 +0100 |
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[git/dials] master: Option to control formatting for output; for smaller files set dp=4 (say) (e3234f6f)
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Thu, 15 Jun 2017 09:09:20 +0100 |
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[git/dials] master: Optionally: compress (is text output; compresses well (1027116d)
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Thu, 15 Jun 2017 09:03:00 +0100 |
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[git/dials] master: Read units properly from NXreflections (bb891223)
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Wed, 14 Jun 2017 09:36:08 -0700 |
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[git/dials] master: Cope with > 1 set of reflections in one spot list; now works fine for l-cyst data (good answer too) (0171df5d)
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Wed, 14 Jun 2017 13:40:45 +0100 |
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[git/dials] master: For reciprocal lattice view in uglymol; cl jiffy to generate csv; see http://jira.diamond.ac.uk/browse/MXSW-1079 dev.dials.csv datablock.json strong.pickle makes rl.csv (9563f97c)
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Wed, 14 Jun 2017 11:54:05 +0100 |
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[git/dials] master: Hypothesis: None of those files are required to be in the git repository. (f725f0c7)
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Wed, 14 Jun 2017 09:08:25 +0100 |
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[git/dials] master: Changes to NXreflections from NIAC (d43e7069)
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Tue, 13 Jun 2017 16:50:40 -0700 |
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[git/dials] master: Add switch as suggested in #357; closes #357 (e9e50714)
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Tue, 13 Jun 2017 15:40:25 +0100 |
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[git/dials] master: another fix for how-to guide (188dd11d)
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Tue, 13 Jun 2017 10:41:43 +0100 |
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[git/dials] master: fixes for the How To guide (ba3330af)
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Mon, 12 Jun 2017 10:11:41 +0100 |
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[git/dials] master: Remove errant print (87f1e31d)
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Mon, 12 Jun 2017 07:42:35 +0100 |
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[git/dials] master: fixed-width block (f7259d1e)
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Fri, 9 Jun 2017 11:49:01 +0100 |
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[git/dials] master: fix Capital (548f3b29)
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Fri, 9 Jun 2017 11:25:25 +0100 |
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[git/dials] master: Ideally, DON'T SHOUT (7c505973)
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Fri, 9 Jun 2017 10:53:35 +0100 |
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[git/dials] master: update howto with instructions for joint refinement (8b88bbcc)
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Fri, 9 Jun 2017 10:04:53 +0100 |
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[git/dials] master: HOWTO for missing images; see https://github.com/dials/dials/issues/369 (47aee048)
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Thu, 8 Jun 2017 14:05:24 +0100 |
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[git/dials] master: Cleanup (ec9474bf)
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Thu, 8 Jun 2017 13:42:24 +0100 |
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[git/dials] master: For testing; set DIALS_EXPORT_DO_NOT_CHECK_FORMAT=1 in environment to not check format; YMMV if your hamster killed as a side effect you have been warned etc. (cdb0f50d)
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Thu, 8 Jun 2017 13:42:24 +0100 |
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[git/dials] master: Cleaning up for #355 (e32e5daa)
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Thu, 8 Jun 2017 13:42:24 +0100 |
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[git/dials] master: Working on export_mtz for #355 (6dba0899)
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Thu, 8 Jun 2017 13:42:24 +0100 |
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[git/dials] master: Remove errant R matrix; normalize s0; for #355 (7319fc04)
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Thu, 8 Jun 2017 13:42:24 +0100 |
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[git/dials] master: Add howto file (2d5b3561)
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Thu, 8 Jun 2017 13:29:06 +0100 |
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[git/dials] master: Kill extra output that brings up unnecessary warnings. (641b44ac)
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Wed, 7 Jun 2017 13:18:31 -0700 |
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[git/dials] master: Re-enable kapton test. (7f3f6490)
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Wed, 7 Jun 2017 12:28:10 -0700 |
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[git/dials] master: Make substitutions to avoid absolute paths. (423b8ed8)
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Wed, 7 Jun 2017 12:20:03 -0700 |
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[git/dials_scratch] master: ELF moved house; clean clutter (5fca96f)
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Wed, 7 Jun 2017 16:15:59 +0100 |
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[git/dials_scratch] master: Clean clutter (5bf9262)
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Wed, 7 Jun 2017 16:15:35 +0100 |
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[git/dials] master: prefer Sorry to uncaught assert (7971eb98)
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Wed, 7 Jun 2017 13:00:31 +0100 |
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[git/dials] master: Stop failing the tests until I fix an absolute path. (4f07996b)
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Wed, 7 Jun 2017 00:55:46 -0700 |
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[git/dials] master: Actually run test (a341254f)
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Tue, 6 Jun 2017 09:19:26 -0700 |
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[git/dials] master: superceded by dials.export format=best (fce1a5c5)
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Tue, 6 Jun 2017 15:29:50 +0100 |
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[git/dials] master: set geometry_phil_scope to expert_level=2. The practical purpose of this is to hide these parameters from the ccp4i2 xia2/dials auto-generated GUI (9b5660c7)
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Tue, 6 Jun 2017 14:09:57 +0100 |
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[git/dials_scratch] master: Make general for reflection files; clean up code (fdae805)
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Tue, 6 Jun 2017 06:58:05 +0100 |
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[git/dials] master: Add the kapton absorption orrection to dials.stills_process and dials.integrate (2552834a)
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Mon, 5 Jun 2017 14:56:44 -0700 |
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[git/dials] master: Change from NXdiffraction to NXreflections. (6dbb697b)
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Mon, 5 Jun 2017 13:46:08 -0700 |
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[git/dials] master: Rename nx_diffraction.py to nx_reflections.py (b38793ec)
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Mon, 5 Jun 2017 13:46:08 -0700 |
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[git/dials] master: Sync to interface change of flex image. (8db742f3)
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Mon, 5 Jun 2017 11:16:17 -0700 |
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[git/dials] master: Add indexing option refinement_protocol.mode = *refine_shells repredict_only (3b3e2f12)
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Mon, 5 Jun 2017 09:00:08 -0700 |
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[git/dials_scratch] master: Test code; exercise twin laws; @ndevenish of possible interest for tasks on your to-do as well (d07819f)
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DIALS Scratch Commit via DLS Jenkins |
Mon, 5 Jun 2017 15:47:25 +0100 |
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[git/dials] master: bug fix for parameter fixing (48ec7a14)
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Mon, 5 Jun 2017 15:12:32 +0100 |
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[git/dials] master: dials.image_viewer: fix load file (closes #354) (509e7bab)
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Mon, 5 Jun 2017 10:29:57 +0100 |
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[git/dials_scratch] master: Alternate formulation of stills prediction using mosaicity and bandpass, this time instead of tophats use gaussian products. (da0427f)
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DIALS Scratch Commit via DLS Jenkins |
Sat, 3 Jun 2017 14:52:32 -0700 |
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[git/dials] master: Index multiple lattices per shot in dials.stills_process. (83a8455a)
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Fri, 2 Jun 2017 12:10:43 -0700 |
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[git/dials] master: Accept case where number of spots is exactly min_spots. As a result, separately catch case where no spots remain. (19e41daf)
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Fri, 2 Jun 2017 11:01:41 -0700 |
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[git/dials_scratch] master: Experimental functions for alternate means of predicting reflection central impacts using a mosaic model and a bandpass. (b8e1035)
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Fri, 2 Jun 2017 10:33:49 -0700 |
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[git/dials] master: Slightly clearer narrative. (f833177b)
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Fri, 2 Jun 2017 08:51:03 -0700 |
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[git/dials] master: Correct a small tutorial typo (9362d357)
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Fri, 2 Jun 2017 13:26:26 +0100 |
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[git/dials] master: dials.image_viewer: respect kernel_size from command line (#354) (0c0d77f8)
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Fri, 2 Jun 2017 13:13:44 +0100 |
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[git/dials_scratch] master: move to xia2 (855ef76)
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Thu, 1 Jun 2017 15:05:54 +0100 |
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[git/dials] master: Added centroid outlier filter to create_profile_model (2b32e67f)
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Thu, 1 Jun 2017 09:38:39 +0100 |
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[git/dials] master: Declutterification (d0312327)
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Thu, 1 Jun 2017 08:30:42 +0100 |
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[git/dials] master: Add ability to update running environment to procrunner (405c194b)
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Thu, 1 Jun 2017 08:29:02 +0100 |
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[git/dials] tag 'v1.6.0' created
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Thu, 1 Jun 2017 08:22:28 +0100 |
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