JISCMail - DIALS-COMMIT Archives

Email discussion lists for the UK Education and Research communities

Subscriber's Corner

Email Lists

DIALS-COMMIT Archives

September 2016

View:

Show Author | Hide Author

		LISTSERV Archives
		DIALS-COMMIT Home

Options

Subscribe or Unsubscribe

Get Password

Subject	From	Date	Size
[git/dials] master: move plotting to save_plots function, create PNGs instead of interactive plots for scripting over multiple datasets (20596c6)	DIALS Commit via DLS Jenkins	Fri, 30 Sep 2016 17:25:51 +0100	301 lines
[git/dials] master: Changed tolerance on test to be less strict (12293d4)	DIALS Commit via DLS Jenkins	Fri, 30 Sep 2016 16:35:16 +0100	85 lines
[git/dials] master: convert residuals to microns or mrad before calculating periodograms, to avoid tiny numbers (72a2c76)	DIALS Commit via DLS Jenkins	Fri, 30 Sep 2016 15:34:48 +0100	179 lines
[git/dials] master: Fixed a bug in the ice ring background modelling (5b1fff3)	DIALS Commit via DLS Jenkins	Fri, 30 Sep 2016 15:31:28 +0100	158 lines
[git/dials] master: Think I have psi calculated OK but not scaling right at the moment... (ad60c30)	DIALS Commit via DLS Jenkins	Fri, 30 Sep 2016 13:59:24 +0100	148 lines
[git/dials] master: Nearly there support for XDS_ASCII format from DIALS integration; just missing psi calculation (41ff696)	DIALS Commit via DLS Jenkins	Fri, 30 Sep 2016 13:04:28 +0100	756 lines
[git/dials_scratch] master: Add to TODO (b3404b8)	DIALS Scratch Commit via DLS Jenkins	Fri, 30 Sep 2016 12:53:16 +0100	70 lines
[git/dials] master: Added some improvements to gmodel algorithm. (f3d6487)	DIALS Commit via DLS Jenkins	Thu, 29 Sep 2016 17:10:32 +0100	551 lines
[git/dials_scratch] master: a few more references and notes (dfef6ff)	DIALS Scratch Commit via DLS Jenkins	Thu, 29 Sep 2016 16:00:04 +0100	375 lines
[git/dials] master: Fixed bug which sometimes results i unisnged int underflow (29cf825)	DIALS Commit via DLS Jenkins	Thu, 29 Sep 2016 11:56:12 +0100	205 lines
[git/dials] master: Made robust estimate for global model a bit faster (592c050)	DIALS Commit via DLS Jenkins	Thu, 29 Sep 2016 11:56:12 +0100	748 lines
[git/dials_scratch] master: Why is this always research (906a7d1)	DIALS Scratch Commit via DLS Jenkins	Thu, 29 Sep 2016 10:41:14 +0100	86 lines
[git/dials_scratch] master: To do's (d9583a5)	DIALS Scratch Commit via DLS Jenkins	Thu, 29 Sep 2016 10:38:43 +0100	72 lines
[git/dials] master: Don't map to ASU; clean up code a little; still getting Inconsistent 2-theta values in same scan from sadabs; for #224 (b216f85)	DIALS Commit via DLS Jenkins	Thu, 29 Sep 2016 08:40:47 +0100	147 lines
[git/dials] master: Now have formats right; remaining inconsistent two theta (apparently) (b00aa5f)	DIALS Commit via DLS Jenkins	Thu, 29 Sep 2016 07:04:11 +0100	103 lines
[git/dials] master: Think I have everything for #224 now need to work out if values right (9049e36)	DIALS Commit via DLS Jenkins	Thu, 29 Sep 2016 06:48:25 +0100	144 lines
[git/dials] master: Ensure dev.dials_sort_reflections doesn't default to creating no output, which after all is fairly useless (c67e195)	DIALS Commit via DLS Jenkins	Wed, 28 Sep 2016 16:47:01 +0100	80 lines
[git/dials_scratch] master: outline for Introduction (19d6075)	DIALS Scratch Commit via DLS Jenkins	Wed, 28 Sep 2016 16:43:08 +0100	149 lines
[git/dials] master: Sort HKL & map to ASU in export to hkl files; see #224 (ad977fa)	DIALS Commit via DLS Jenkins	Wed, 28 Sep 2016 16:21:04 +0100	97 lines
[git/dials] master: Add a basic test of sort by miller_index (e3cdb7b)	DIALS Commit via DLS Jenkins	Wed, 28 Sep 2016 16:08:02 +0100	104 lines
[git/dials] master: don't forget reverse (d4421fb)	DIALS Commit via DLS Jenkins	Wed, 28 Sep 2016 15:33:55 +0100	76 lines
[git/dials] master: the wrong braces (521b2a5)	DIALS Commit via DLS Jenkins	Wed, 28 Sep 2016 15:29:14 +0100	75 lines
[git/dials] master: Revert to using Python sorted instead of reflection_table.sort, as introduced by 3ad45d4, because the latter can't handle composite data types like miller_index and vec3_double (50cae9a)	DIALS Commit via DLS Jenkins	Wed, 28 Sep 2016 15:27:37 +0100	144 lines
[git/dials] master: Oops, need fabs not abs. Also use a smaller threshold value. (63a026a)	DIALS Commit via DLS Jenkins	Tue, 27 Sep 2016 15:47:49 +0100	77 lines
[git/dials] master: avoid divide by zero by returning null matrix when the angle is close to zero (a8c0d1a)	DIALS Commit via DLS Jenkins	Tue, 27 Sep 2016 15:47:48 +0100	144 lines
[git/dials] master: Include capability to produce weird .p4p file thing (7b92c54)	DIALS Commit via DLS Jenkins	Tue, 27 Sep 2016 14:33:33 +0100	159 lines
[git/dials] master: Include a little output; name file .raw not .hkl (different meaning, apparently) & don't reindex to reference setting (c7bd9d8)	DIALS Commit via DLS Jenkins	Tue, 27 Sep 2016 12:39:14 +0100	168 lines
[git/dials] master: revert (1a58339)	DIALS Commit via DLS Jenkins	Tue, 27 Sep 2016 11:12:05 +0100	69 lines
[git/dials] master: No need for export to check format (1a31abb)	DIALS Commit via DLS Jenkins	Tue, 27 Sep 2016 11:05:44 +0100	70 lines
[git/dials] master: Putative support for outputting files in hklf4 format for input to sadabs; see http://jira.diamond.ac.uk/browse/MXSW-31 N.B. not at all certain right now that this is anything like right... (28a813a)	DIALS Commit via DLS Jenkins	Tue, 27 Sep 2016 11:02:00 +0100	648 lines
[git/dials_scratch] master: Better script; run refine.sh [0-5] (2d36cc5)	DIALS Scratch Commit via DLS Jenkins	Mon, 26 Sep 2016 15:07:49 +0100	83 lines
[git/dials_scratch] master: Just the facts, Jack (8138037)	DIALS Scratch Commit via DLS Jenkins	Mon, 26 Sep 2016 14:44:16 +0100	74 lines
[git/dials_scratch] master: Scripts / phil to do indexing / refinement (ffdd152)	DIALS Scratch Commit via DLS Jenkins	Mon, 26 Sep 2016 14:43:52 +0100	125 lines
[git/dials_scratch] master: Raw material for metrology refinemnt for I03 data split into 6 120 degree chunks (987df34)	DIALS Scratch Commit via DLS Jenkins	Mon, 26 Sep 2016 14:39:39 +0100	88 lines
[git/dials] master: Clearer help string. If geometry.beam.direction is supplied it overrides the sample to source direction, not the unit s0 direction. (8baae47)	DIALS Commit via DLS Jenkins	Mon, 26 Sep 2016 14:35:29 +0100	77 lines
[git/dials_scratch] master: I03 metrology split into 6 chunks (5855de9)	DIALS Scratch Commit via DLS Jenkins	Mon, 26 Sep 2016 13:05:55 +0100	115 lines
[git/dials_scratch] master: Now can reproduce spherical harmonic pictures to m=3 (83cf383)	DIALS Scratch Commit via DLS Jenkins	Mon, 26 Sep 2016 09:32:14 +0100	309 lines
[git/dials_scratch] master: Looking at spherical harmonics (3aaccc0)	DIALS Scratch Commit via DLS Jenkins	Mon, 26 Sep 2016 08:35:51 +0100	152 lines
[git/dials] master: Change default for basis_vector_combinations.max_try for stills. (2bc7f62)	DIALS Commit via DLS Jenkins	Sun, 25 Sep 2016 18:50:27 -0700	128 lines
[git/dials] master: eliminate 'import pickle', always use cPickle (1b2d4f0)	DIALS Commit via DLS Jenkins	Fri, 23 Sep 2016 17:59:41 +0100	105 lines
[git/dials] master: move import (d7c7905)	DIALS Commit via DLS Jenkins	Fri, 23 Sep 2016 12:52:35 +0100	89 lines
[git/dials] master: Count_cutoff should be an integer (210f202)	DIALS Commit via DLS Jenkins	Thu, 22 Sep 2016 14:31:35 +0100	94 lines
[git/dials] master: Fix #216 - logic error preventing loop exit (d801374)	DIALS Commit via DLS Jenkins	Thu, 22 Sep 2016 10:39:05 +0100	105 lines
[git/dials] master: 1st cut at working out contrasting colours; for #217 (3e31d67)	DIALS Commit via DLS Jenkins	Thu, 22 Sep 2016 09:59:33 +0100	87 lines
[git/dials] master: Impose limits on RGB values (0,1) (7040676)	DIALS Commit via DLS Jenkins	Thu, 22 Sep 2016 09:59:05 +0100	74 lines
[git/dials] master: Pass background_rgb parameter, useful for generating images for print (2da9afa)	DIALS Commit via DLS Jenkins	Wed, 21 Sep 2016 08:30:40 +0100	119 lines
[git/dials] master: Allow choice between smoothing kernels for CentroidAnalyser, rescale frequency axis of periodogram plots to deg^-1, and bug fixes (28ad2c8)	DIALS Commit via DLS Jenkins	Tue, 20 Sep 2016 14:15:11 +0100	379 lines
[git/dials] master: bug fix (1bd8a83)	DIALS Commit via DLS Jenkins	Tue, 20 Sep 2016 13:27:18 +0100	82 lines
[git/dials] master: spelling correction (0e03956)	DIALS Commit via DLS Jenkins	Tue, 20 Sep 2016 13:08:57 +0100	73 lines
[git/dials] master: fix zenodo badges (b6c2765)	DIALS Commit via DLS Jenkins	Tue, 20 Sep 2016 11:04:54 +0100	118 lines
[git/dials] master: shared phil scope for goniometer masking; add parameter to dials.export_bitmaps (2390ee9)	DIALS Commit via DLS Jenkins	Mon, 19 Sep 2016 10:28:50 +0100	227 lines
[git/dials] master: Added commit to fix ambiguous template type thing. (726abd9)	DIALS Commit via DLS Jenkins	Mon, 19 Sep 2016 09:24:13 +0100	85 lines
[git/dials] master: fix documentation for 252986b15ba51f16ee4d5ef36490a559fdf06525 (e93517f)	DIALS Commit via DLS Jenkins	Mon, 19 Sep 2016 09:09:12 +0100	100 lines
[git/dials_scratch] master: Bugfixes (c55c8ab)	DIALS Scratch Commit via DLS Jenkins	Fri, 16 Sep 2016 16:10:12 -0700	161 lines
[git/dials_scratch] master: Putative prototype for alternate cspad.cbf_metrology. Work very much in progress. (8831251)	DIALS Scratch Commit via DLS Jenkins	Fri, 16 Sep 2016 14:59:07 -0700	194 lines
[git/dials_scratch] master: Add output_dir and pass along reference_geometry parameter (7196b78)	DIALS Scratch Commit via DLS Jenkins	Fri, 16 Sep 2016 14:57:20 -0700	135 lines
[git/dials] master: new dials.image_viewer parameter goniometer_shadow_mask=False (a72caa0)	DIALS Commit via DLS Jenkins	Fri, 16 Sep 2016 17:33:46 +0100	134 lines
[git/dials] master: new spotfinding parameter goniometer_shadow_mask=False (d994930)	DIALS Commit via DLS Jenkins	Fri, 16 Sep 2016 17:12:23 +0100	355 lines
[git/dials] master: print crystal angles wrt phi and omega axes (cfe71d1)	DIALS Commit via DLS Jenkins	Fri, 16 Sep 2016 14:33:19 +0100	198 lines
[git/dials] master: import.py -> dials_import.py to avoid naming clash with reserved python keyword (252986b)	DIALS Commit via DLS Jenkins	Fri, 16 Sep 2016 14:22:30 +0100	105 lines
[git/dials] master: allow multi-axis goniometer axes to be modified in dials.import (f4727a0)	DIALS Commit via DLS Jenkins	Fri, 16 Sep 2016 14:22:30 +0100	702 lines
[git/dials] master: Imprve help string (e0f8814)	DIALS Commit via DLS Jenkins	Fri, 16 Sep 2016 13:27:47 +0100	77 lines
[git/dials] master: bug fix (6780941)	DIALS Commit via DLS Jenkins	Fri, 16 Sep 2016 12:13:38 +0100	75 lines
[git/dials] master: improve messages in debug log about outlier rejection (cd9004b)	DIALS Commit via DLS Jenkins	Fri, 16 Sep 2016 11:18:52 +0100	176 lines
[git/dials] master: Did clean clutter on blobfinder code (284b608)	DIALS Commit via DLS Jenkins	Fri, 16 Sep 2016 09:42:38 +0100	2299 lines
[git/dials] master: removed old redundant code (02314b7)	DIALS Commit via DLS Jenkins	Fri, 16 Sep 2016 09:42:18 +0100	639 lines
[git/dials] master: Added polar transform fix (292a819)	DIALS Commit via DLS Jenkins	Fri, 16 Sep 2016 09:40:42 +0100	125 lines
[git/dials_scratch] master: Jiffy script for using easy_mp multiprocessing to index a pile of stills that have already had spotfinding done. Prototyping a new workflow for metrology refinement. (680f182)	DIALS Scratch Commit via DLS Jenkins	Thu, 15 Sep 2016 16:13:37 -0700	233 lines
[git/dials] master: Bugfix for dials.index (as opposed to dials.stills_process) (5ef8667)	DIALS Commit via DLS Jenkins	Thu, 15 Sep 2016 14:50:09 -0700	126 lines
[git/dials] master: fix axis names in dials.align_crystal output (0976004)	DIALS Commit via DLS Jenkins	Thu, 15 Sep 2016 15:54:39 +0100	122 lines
[git/dials] master: move separation of reflections by block size, imageset and entering flags into nearest neighbour calculations; only separate for initial NN analysis, combine all NN distances in histogram analysis (b5a457c)	DIALS Commit via DLS Jenkins	Thu, 15 Sep 2016 14:50:09 +0100	415 lines
[git/dials] master: don't do auto block_width determination in initial trial refinement runs (too expensive) #158 (3fdc3be)	DIALS Commit via DLS Jenkins	Thu, 15 Sep 2016 14:30:48 +0100	337 lines
[git/dials] master: Fixed issue with indentation in extension helen (73bf05b)	DIALS Commit via DLS Jenkins	Thu, 15 Sep 2016 14:19:06 +0100	82 lines
[git/dials] master: Merge changes with James' (helen spotfinder) (a358455)	DIALS Commit via DLS Jenkins	Thu, 15 Sep 2016 14:15:54 +0100	125 lines
[git/dials] master: Add num_passes parameter to helen spotfinding algorithm (a53704d)	DIALS Commit via DLS Jenkins	Thu, 15 Sep 2016 14:12:13 +0100	2220 lines
[git/dials] master: Tidied up function for helens blob fnder (0210eb5)	DIALS Commit via DLS Jenkins	Thu, 15 Sep 2016 13:21:34 +0100	113 lines
[git/dials] master: Added correlation image output for Helens spot finding (9f1574e)	DIALS Commit via DLS Jenkins	Thu, 15 Sep 2016 12:52:12 +0100	311 lines
[git/dials] master: Removed default thing. Hopefully this fixes things (f1a0c76)	DIALS Commit via DLS Jenkins	Thu, 15 Sep 2016 12:36:50 +0100	76 lines
[git/dials] master: Changed helens algorithm from default - oops! (bcccbd5)	DIALS Commit via DLS Jenkins	Thu, 15 Sep 2016 11:56:00 +0100	138 lines
[git/dials_scratch] master: graphite --> photons --> bits (6f8186a)	DIALS Scratch Commit via DLS Jenkins	Thu, 15 Sep 2016 10:56:35 +0100	58 lines
[git/dials_scratch] master: skeleton for paper that compiles (3874908)	DIALS Scratch Commit via DLS Jenkins	Thu, 15 Sep 2016 10:47:51 +0100	2277 lines
[git/dials_scratch] master: IUCr template etc (2560d59)	DIALS Scratch Commit via DLS Jenkins	Thu, 15 Sep 2016 10:23:22 +0100	60 lines
[git/dials] master: Added helens spot finding algorithm (1dfcba3)	DIALS Commit via DLS Jenkins	Thu, 15 Sep 2016 10:16:39 +0100	1570 lines
[git/dials] master: Added a license to helens code (c353b75)	DIALS Commit via DLS Jenkins	Thu, 15 Sep 2016 10:16:39 +0100	95 lines
[git/dials_scratch] master: Updated notes (008f513)	DIALS Scratch Commit via DLS Jenkins	Thu, 15 Sep 2016 10:02:48 +0100	217 lines
[git/dials_scratch] master: Notes pulled from the DIALS7 Agenda Google doc (3129d94)	DIALS Scratch Commit via DLS Jenkins	Thu, 15 Sep 2016 09:47:10 +0100	317 lines
[git/dials_scratch] master: Space to work on dials metrology paper 0 (4f1c24e)	DIALS Scratch Commit via DLS Jenkins	Thu, 15 Sep 2016 09:43:33 +0100	56 lines
[git/dials] master: provide access to block_width after construction (7d9e9b6)	DIALS Commit via DLS Jenkins	Wed, 14 Sep 2016 17:05:20 +0100	84 lines
[git/dials] master: bug fix: ensure nblocks always increases (c1ba72d)	DIALS Commit via DLS Jenkins	Wed, 14 Sep 2016 17:05:20 +0100	101 lines
[git/dials] master: Change default to automatically determine block-width for outlier rejection, if 18 degrees is not suitable (see #158). This can add a significant overhead to dials.index (which runs many refinements) (ac049bf)	DIALS Commit via DLS Jenkins	Wed, 14 Sep 2016 17:05:20 +0100	100 lines
[git/dials] master: Rearrangements that reduce the overhead of getting basic data out of a CentroidAnalyser (e.g. for indexing) (fc3daee)	DIALS Commit via DLS Jenkins	Wed, 14 Sep 2016 17:05:20 +0100	719 lines
[git/dials] master: Set outlier rejection block size automatically if outlier.block_width=Auto. Fixes #158 (ae0715c)	DIALS Commit via DLS Jenkins	Wed, 14 Sep 2016 17:05:20 +0100	178 lines
[git/dials] master: Allow setting of multiple block widths for outlier rejection (one per experiment) (fe45cbe)	DIALS Commit via DLS Jenkins	Wed, 14 Sep 2016 17:05:20 +0100	246 lines
[git/dials] master: bug fix to avoid failure if the initial block width produces some blocks containing zero reflections (3cd3192)	DIALS Commit via DLS Jenkins	Wed, 14 Sep 2016 17:05:20 +0100	225 lines
[git/dials] master: updated expected RMSDs to cope with automatic outlier rejection block width determination. In this test the automatically-determined block width is larger than the default of 18 degrees, so a different set of reflections survives outlier rejection and the final RMSDs are affected. (725b716)	DIALS Commit via DLS Jenkins	Wed, 14 Sep 2016 17:05:20 +0100	87 lines
[git/dials] master: fix bugs exposed by tests (f35eb32)	DIALS Commit via DLS Jenkins	Wed, 14 Sep 2016 17:05:20 +0100	217 lines
[git/dials] master: Collect basic results on initialisation, optionally calculate power spectra later on call (727fe96)	DIALS Commit via DLS Jenkins	Wed, 14 Sep 2016 17:05:20 +0100	328 lines
[git/dials] master: Daniell and Modified Daniell kernels for smoothing and a function kernapply (based on the R fn of the same name) for applying a smoothing kernel to a 1D real sequence (1bcd9de)	DIALS Commit via DLS Jenkins	Wed, 14 Sep 2016 17:05:19 +0100	190 lines
[git/dials] master: Allow kernel smoothing, so far with a single integer spans argument to construct a modified Daniell kernel (see R's spec.pgram) (2079352)	DIALS Commit via DLS Jenkins	Wed, 14 Sep 2016 17:05:19 +0100	153 lines
[git/dials] master: Add a class to calculate the raw periodogram of a sequence, based on R's spec.pgram. Also, a test script that uses RPy2 to compare results with spec.pgram. Further development of CentroidAnalyser. (0c28c12)	DIALS Commit via DLS Jenkins	Wed, 14 Sep 2016 17:05:19 +0100	472 lines
[git/dials] master: remove the rpy2 calls (69ac62e)	DIALS Commit via DLS Jenkins	Wed, 14 Sep 2016 17:05:19 +0100	111 lines
[git/dials] master: simple semilog plot to explore properties of the power spectrum of residuals for real data (845ac5f)	DIALS Commit via DLS Jenkins	Wed, 14 Sep 2016 17:05:19 +0100	189 lines
[git/dials] master: Implement spec.pgram's detrend method in Periodogram (084378b)	DIALS Commit via DLS Jenkins	Wed, 14 Sep 2016 17:05:19 +0100	207 lines
[git/dials] master: Construct a test of Periodogram that doesn't depend on rpy2, add to run_tests. Add tests of CentroidAnalyser here as features are developed. (2bfe2fe)	DIALS Commit via DLS Jenkins	Wed, 14 Sep 2016 17:05:19 +0100	927 lines
[git/dials] master: allow kernel smoothing with a convolved kernel set up using a sequence in the spans argument (see R's spec.pgram). Test results are the same as from R. (bde0ada)	DIALS Commit via DLS Jenkins	Wed, 14 Sep 2016 17:05:19 +0100	273 lines
[git/dials] master: Allow construction of arbitrary kernels (f3ee483)	DIALS Commit via DLS Jenkins	Wed, 14 Sep 2016 17:05:19 +0100	111 lines
[git/dials] master: Use calculated X and Y both == 0.0 to detect non-predictions. The norms method doesn't work because sometimes the phi calc of a failed prediction comes back as 2*pi (5155870)	DIALS Commit via DLS Jenkins	Wed, 14 Sep 2016 17:05:19 +0100	89 lines
[git/dials] master: Add test of smoothed periodogram construction vs R (c2ebce1)	DIALS Commit via DLS Jenkins	Wed, 14 Sep 2016 17:05:19 +0100	224 lines
[git/dials] master: skeleton for CentroidAnalyser (d8487b6)	DIALS Commit via DLS Jenkins	Wed, 14 Sep 2016 17:05:18 +0100	348 lines
[git/dials] master: Removed old code (0dae7ae)	DIALS Commit via DLS Jenkins	Wed, 14 Sep 2016 13:09:48 +0100	2329 lines
[git/dials] master: RLV: print model view matrix to status bar, add model_view_parameter to enable restoring precise view of lattice (a57a00e)	DIALS Commit via DLS Jenkins	Wed, 14 Sep 2016 11:13:47 +0100	139 lines
[git/dials] master: Filter out reflections with -ve variance to allow use with integrated data (i.e. kin to pointless) (eb7e859)	DIALS Commit via DLS Jenkins	Wed, 14 Sep 2016 08:34:31 +0100	103 lines
[git/dials] master: Added stuff to model_background (db72811)	DIALS Commit via DLS Jenkins	Tue, 13 Sep 2016 17:23:20 +0100	1182 lines
[git/dials] master: Added some comments (f09e7fc)	DIALS Commit via DLS Jenkins	Tue, 13 Sep 2016 17:23:20 +0100	81 lines
[git/dials] master: Added code to fill holes (e12ec15)	DIALS Commit via DLS Jenkins	Tue, 13 Sep 2016 17:23:20 +0100	240 lines
[git/dials] master: Fixed masking and added some checks (d15f092)	DIALS Commit via DLS Jenkins	Tue, 13 Sep 2016 17:23:20 +0100	233 lines
[git/dials] master: Put all stuff into model_background (0a65071)	DIALS Commit via DLS Jenkins	Tue, 13 Sep 2016 17:23:20 +0100	386 lines
[git/dials] master: Added model finalizer and fized masking in polar transform (bd90773)	DIALS Commit via DLS Jenkins	Tue, 13 Sep 2016 17:23:20 +0100	360 lines
[git/dials] master: Added masking to polar transform (b026605)	DIALS Commit via DLS Jenkins	Tue, 13 Sep 2016 17:23:20 +0100	731 lines
[git/dials] master: Removed unused variables (fd3e672)	DIALS Commit via DLS Jenkins	Tue, 13 Sep 2016 17:23:20 +0100	114 lines
[git/dials] master: Polar transform code (2e8a411)	DIALS Commit via DLS Jenkins	Tue, 13 Sep 2016 17:23:20 +0100	61 lines
[git/dials] master: to and from polar bits (bed1ec2)	DIALS Commit via DLS Jenkins	Tue, 13 Sep 2016 17:23:20 +0100	547 lines
[git/dials] master: set rotation centre to origin of reciprocal space, centre viewpoint at origin #203 (56c4f8a)	DIALS Commit via DLS Jenkins	Tue, 13 Sep 2016 15:03:15 +0100	114 lines
[git/dials] master: bug fix (3e08f74)	DIALS Commit via DLS Jenkins	Tue, 13 Sep 2016 13:59:10 +0100	113 lines
[git/dials_scratch] master: script to generate shadow map for multi-axis goniometers (a6df496)	DIALS Scratch Commit via DLS Jenkins	Tue, 13 Sep 2016 13:50:31 +0100	259 lines
[git/dials] master: fixes #204 (f752ad2)	DIALS Commit via DLS Jenkins	Tue, 13 Sep 2016 09:41:31 +0100	72 lines
[git/dials] master: Bugfix for MPI (644e46e)	DIALS Commit via DLS Jenkins	Mon, 12 Sep 2016 14:03:37 -0700	211 lines
[git/dials] master: new dials.align_crystal command (7c6bd6f)	DIALS Commit via DLS Jenkins	Mon, 12 Sep 2016 14:30:35 +0100	814 lines
[git/dials] master: weighting_strategy.override=external_deltapsi expects the input reflection table to include the key 'delpsical.weights', defining the weights for the DeltaPsi restraint during refinement. This enables exploration of alternative weighting strategies that, for example, encode the prior knowledge that, on balance, strong reflections are expected to be closer to the Ewald sphere. (6fbf5b2)	DIALS Commit via DLS Jenkins	Fri, 9 Sep 2016 11:55:26 +0100	236 lines
[git/dials] master: optionally return both solutions in rotation decomposition (0e81abc)	DIALS Commit via DLS Jenkins	Thu, 8 Sep 2016 15:34:14 +0100	264 lines
[git/dials] master: Added mask output (684ce12)	DIALS Commit via DLS Jenkins	Thu, 8 Sep 2016 15:27:33 +0100	493 lines
[git/dials] master: Added some extra output stuff (28c07be)	DIALS Commit via DLS Jenkins	Thu, 8 Sep 2016 15:27:33 +0100	198 lines
[git/dials] master: Added command to import from eiger stream (822d6cd)	DIALS Commit via DLS Jenkins	Thu, 8 Sep 2016 15:27:33 +0100	1029 lines
[git/dials] master: Added output of mean, variance, dispersion images (b69bad3)	DIALS Commit via DLS Jenkins	Thu, 8 Sep 2016 15:27:33 +0100	442 lines
[git/dials] master: dials.tutorial command; fixes #181 (097fefd)	DIALS Commit via DLS Jenkins	Thu, 8 Sep 2016 15:05:07 +0100	133 lines
[git/dials] master: Include phil scope rather than duplicting definitions; @RJG thanks for suggestion (a240288)	DIALS Commit via DLS Jenkins	Thu, 8 Sep 2016 13:52:08 +0100	217 lines
[git/dials] master: Slightly less shonky implementation (3b57aac)	DIALS Commit via DLS Jenkins	Thu, 8 Sep 2016 13:48:16 +0100	229 lines
[git/dials] master: Some engines (e.g. SparseLevMar) cannot calculate ESDs so allow for the cached matrix to be None and return None in that case (6969b9a)	DIALS Commit via DLS Jenkins	Thu, 8 Sep 2016 13:43:22 +0100	98 lines
[git/dials] master: Implement tolerance framework to combine experiments i.e. allow dials.combine_experiments experiments_[1-3].json reflections_[1-3].pickle reference_from_experiment.detector=0 fast_axis=1e-2 slow_axis=1e-2 origin=5 (e82dc63)	DIALS Commit via DLS Jenkins	Thu, 8 Sep 2016 13:41:45 +0100	424 lines
[git/dials] master: Clean clutter (103e3a3)	DIALS Commit via DLS Jenkins	Thu, 8 Sep 2016 13:40:31 +0100	48 lines
[git/dials] master: Added angle calculations between incoming & outgoing panel vectrs (618d9fd)	DIALS Commit via DLS Jenkins	Thu, 8 Sep 2016 12:59:03 +0100	136 lines
[git/dials] master: Default verbosity = 2 (49c15d9)	DIALS Commit via DLS Jenkins	Thu, 8 Sep 2016 12:59:03 +0100	80 lines
[git/dials_scratch] master: Bug fix (48d5130)	DIALS Scratch Commit via DLS Jenkins	Thu, 8 Sep 2016 08:31:33 +0100	73 lines
[git/dials] master: engine=SparseLevMar implies parameterisation.sparse=True (c9e8b72)	DIALS Commit via DLS Jenkins	Wed, 7 Sep 2016 15:41:14 +0100	79 lines
[git/dials] master: Fixes to Duelling profiles (bc72a40)	DIALS Commit via DLS Jenkins	Wed, 7 Sep 2016 15:34:40 +0100	91 lines
[git/dials] master: Send results to info only if verbose > 1 else debug (8f12bdb)	DIALS Commit via DLS Jenkins	Wed, 7 Sep 2016 15:34:40 +0100	105 lines
[git/dials] master: Also fix distance of a panel group if too few reflections (1a1d944)	DIALS Commit via DLS Jenkins	Wed, 7 Sep 2016 13:49:16 +0100	113 lines
[git/dials] master: explicitly provide panel IDs (0-offset) (218d797)	DIALS Commit via DLS Jenkins	Wed, 7 Sep 2016 13:37:28 +0100	80 lines
[git/dials] master: more information in the message - TODO clean this up later (2a65b83)	DIALS Commit via DLS Jenkins	Wed, 7 Sep 2016 13:33:45 +0100	162 lines
[git/dials] master: more useful error message? (d9e8548)	DIALS Commit via DLS Jenkins	Wed, 7 Sep 2016 13:09:57 +0100	136 lines
[git/dials] master: remove print statement (1d38f9c)	DIALS Commit via DLS Jenkins	Wed, 7 Sep 2016 13:03:44 +0100	80 lines
[git/dials] master: New parameterisation.auto_reduction.detector_reduce=True option to try fixing non-essential parameters defined by detector_reduce_list (by default Tau2, Tau3) before failing if there are still too many parameters for sensible refinement. This is particularly designed for the special case of metrology refinement (of the CSPAD). (4ab30cc)	DIALS Commit via DLS Jenkins	Wed, 7 Sep 2016 12:44:06 +0100	245 lines
[git/dials] master: make fast version of show_mask default; add tick box to settings panel (70bb772)	DIALS Commit via DLS Jenkins	Tue, 6 Sep 2016 16:42:45 +0100	272 lines
[git/dials] master: bug fix (e66da6f)	DIALS Commit via DLS Jenkins	Tue, 6 Sep 2016 15:07:40 +0100	115 lines
[git/dials] master: remove scipy convex hull dependency (6467dcb)	DIALS Commit via DLS Jenkins	Tue, 6 Sep 2016 12:13:42 +0100	203 lines
[git/dials] master: use is_inside_polygon instead of delaunay triangulation (reduce dependency on scipy) (1cf7d8d)	DIALS Commit via DLS Jenkins	Tue, 6 Sep 2016 12:12:58 +0100	162 lines
[git/dials] master: fix test (2684f30)	DIALS Commit via DLS Jenkins	Sat, 3 Sep 2016 17:56:29 +0100	92 lines
[git/dials] master: add show_mask option to dials.export_bitmaps (45bff17)	DIALS Commit via DLS Jenkins	Fri, 2 Sep 2016 17:25:25 +0100	213 lines
[git/dials] master: dials.image_viewer: show_mask2=true now sets show_untrusted=True in flex image; markup of masked/untrusted pixels as red pixels (201522d)	DIALS Commit via DLS Jenkins	Fri, 2 Sep 2016 16:52:58 +0100	107 lines
[git/dials] master: Command line completion and dispatcher name setting are mutually exclusive. Sorry. (71086f0)	DIALS Commit via DLS Jenkins	Fri, 2 Sep 2016 16:41:11 +0100	72 lines
[git/dials] master: add missing test (9285c64)	DIALS Commit via DLS Jenkins	Fri, 2 Sep 2016 15:34:11 +0100	98 lines
[git/dials] master: start work on tool to check which predicted reflections would be shadowed by a goniometer (9c7ce4f)	DIALS Commit via DLS Jenkins	Fri, 2 Sep 2016 15:27:39 +0100	339 lines
[git/dials] master: expose is_inside_polygon function to python, including overloaded array version (29aa6b7)	DIALS Commit via DLS Jenkins	Fri, 2 Sep 2016 10:34:59 +0100	147 lines
[git/dials] master: avoid python loop over every pixel along panel edges: much faster (8f7f156)	DIALS Commit via DLS Jenkins	Thu, 1 Sep 2016 17:22:58 +0100	209 lines
[git/dials] master: bug fix: minimum of 3 (?) points for convex hull calculation (00a68c7)	DIALS Commit via DLS Jenkins	Thu, 1 Sep 2016 16:17:28 +0100	75 lines

DIALS-COMMIT Archives

September 2016

Options

Subject

From

Date

Size

JiscMail Tools

RSS Feeds and Sharing

Search Archives

Archives