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May 2018


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[git/dials] master: Export intensities and variances as determined by scaling. (b499c619)

DIALS commit

Thu, 31 May 2018 16:54:59 +0100

444 lines

[git/dials] master: Use experiment identifiers to allow dataset inclusion/exclusion. (a2ab930f)

DIALS commit

Thu, 31 May 2018 15:30:14 +0100

748 lines

[git/dials_scratch] master: Added macro cycles of reindexing outlier rejection and refinement (e2422ad)

DIALS Scratch commit

Thu, 31 May 2018 14:16:47 +0100

486 lines

[git/dials] master: Updated test (7ed01cca)

DIALS commit

Thu, 31 May 2018 13:35:23 +0100

83 lines

[git/dials] master: Changed != to == to fix bug in experiment identifiers (75a2d755)

DIALS commit

Thu, 31 May 2018 13:26:21 +0100

91 lines

[git/dials_scratch] master: Adding mcd centroid outlier rejection (d5e892a)

DIALS Scratch commit

Thu, 31 May 2018 13:19:16 +0100

282 lines

[git/dials_scratch] master: Removed some commented out code (d2ee45b)

DIALS Scratch commit

Thu, 31 May 2018 13:19:16 +0100

97 lines

[git/dials_scratch] master: Add currently broken test for experiment identifiers. (107c81e)

DIALS Scratch commit

Thu, 31 May 2018 13:01:18 +0100

115 lines

[git/dials] master: Add function to assign unique identifiers to experiment list and reflections. (cf628ecc)

DIALS commit

Thu, 31 May 2018 12:58:21 +0100

472 lines

[git/dials_scratch] master: Adding a directory for me and a little script for investigating measurement errors in an unmerged MTZ. (466fd45)

DIALS Scratch commit

Thu, 31 May 2018 10:12:39 +0100

499 lines

[git/dials] master: Bugfix for show when no parameter esds present. (48595c16)

DIALS commit

Wed, 30 May 2018 17:01:37 +0100

135 lines

[git/dials] master: test_assign_indices bug fix: set deg=True when calling euler_angles_as_matrix; remove setting of random seed; test with max rotation of 0.5 deg (a581d6bc)

DIALS commit

Wed, 30 May 2018 16:08:16 +0100

181 lines

[git/dials] master: Add option to remove or chose datasets based on dataset id. (463229ae)

DIALS commit

Wed, 30 May 2018 15:09:31 +0100

1229 lines

[git/dials] master: Refactoring code to make interactions cleaner. (1e8ee9bd)

DIALS commit

Wed, 30 May 2018 15:09:31 +0100

119 lines

[git/dials] master: scratch no more (aceaffd4)

DIALS commit

Wed, 30 May 2018 10:57:29 +0100

136 lines

[git/dials] master: update intersphinx pointers (29a1a7ec)

DIALS commit

Wed, 30 May 2018 08:25:58 +0100

131 lines

[git/dials] master: move imports to top; eliminate import/variable clash; bug fix - use all datasets not just the first 10 (4c57fdb5)

DIALS commit

Tue, 29 May 2018 12:02:31 +0100

156 lines

[git/dials] master: no need to fetch xia2 regression data if DLS file system is accessible (8b8903db)

DIALS commit

Tue, 29 May 2018 10:48:39 +0100

111 lines

[git/dials] master: exception.message is deprecated, use str(exception) instead (8f286a04)

DIALS commit

Tue, 29 May 2018 08:50:48 +0100

106 lines

[git/dials] master: Updating error model refinement. (629d4723)

DIALS commit

Fri, 25 May 2018 15:54:24 +0100

903 lines

[git/dials] master: Reintroduce option to optimise an error model for the variances. (1b5c2eec)

DIALS commit

Fri, 25 May 2018 15:54:24 +0100

1595 lines

[git/dials] master: Add n_signal column to output reflections in dials.find_spots; fixes #566 (3e47530c)

DIALS commit

Fri, 25 May 2018 08:31:10 +0100

84 lines

[git/dials] master: Add widget to allow filtering on spot size; depends on n_signal column in strong.pickle from augment #todo add this column by default in dials.find_spots (b2179808)

DIALS commit

Fri, 25 May 2018 07:27:17 +0100

272 lines

[git/dials] master: Copy paste error fix; fixes #564 (e16ee7d2)

DIALS commit

Fri, 25 May 2018 06:58:41 +0100

80 lines

[git/dials] master: pow needs first argument to be floating point (for VS2009) (b7e50db7)

DIALS commit

Thu, 24 May 2018 16:04:11 -0700

130 lines

[git/dials] master: Output summation intensities in unmerged mtz if used in scaling. (ee4b2c59)

DIALS commit

Thu, 24 May 2018 17:03:55 +0100

78 lines

[git/dials] master: Add option to use internal variance when calculating merging statistics and exporting merged data. (8aec7511)

DIALS commit

Thu, 24 May 2018 16:56:53 +0100

335 lines

[git/dials] master: Add option to export merged and unmerged mtz files of scaled data. (aa3d5512)

DIALS commit

Thu, 24 May 2018 16:23:17 +0100

482 lines

[git/dials] master: Change params to self.params, to allow use in other modules. (b940cfaf)

DIALS commit

Thu, 24 May 2018 16:20:36 +0100

111 lines

[git/dials_scratch] master: Add condition number to output (bd757b0)

DIALS Scratch commit

Thu, 24 May 2018 15:56:19 +0100

86 lines

[git/dials_scratch] master: Output the refinement history (ba5c00c)

DIALS Scratch commit

Thu, 24 May 2018 15:56:19 +0100

291 lines

[git/dials_scratch] master: Added option to use sigma_d for mask and shoebox (i.e. just use refinement for prediction) as a control to test masking and prediction (b85e5e1)

DIALS Scratch commit

Thu, 24 May 2018 15:56:19 +0100

335 lines

[git/dials_scratch] master: Improved the bounding box calculation (eb917fe)

DIALS Scratch commit

Thu, 24 May 2018 15:56:19 +0100

234 lines

[git/dials] master: Filter outliers determined in scaling if dataset has been scaled. (0276e97c)

DIALS commit

Thu, 24 May 2018 09:25:23 +0100

141 lines

[git/dials] master: support for scaled.pickle files (1cdf869c)

DIALS commit

Wed, 23 May 2018 15:54:19 +0100

74 lines

[git/dials] master: backwards compatibility for dqe -> qe renaming (5edd2e77)

DIALS commit

Wed, 23 May 2018 15:54:04 +0100

72 lines

[git/dials] master: dials.symmetry: add support for multiple datasets (0176fbdc)

DIALS commit

Wed, 23 May 2018 15:31:09 +0100

260 lines

[git/dials_scratch] master: Moving David's scaling files from dials to dials_scratch (1bf1218)

DIALS Scratch commit

Wed, 23 May 2018 15:27:24 +0100

2598 lines

[git/dials] master: Add rmsd_tolerance option to scaling refiner. Rename option full_matrix_round > full_matrix (2146e9ee)

DIALS commit

Wed, 23 May 2018 15:17:53 +0100

334 lines

[git/dials] master: Added scaling model to dials.show output. Renamed n_proc > nproc for scaling, for consistency with other files. Removed DGW's scaling code - is being moved to dials_scratch. (20b022a1)

DIALS commit

Wed, 23 May 2018 14:26:16 +0100

3067 lines

[git/dials] master: auto_reduction.action=remove only makes sense for multi-experiment or multi-panel refinement, so check this is the case. (90c9b2bd)

DIALS commit

Wed, 23 May 2018 12:32:00 +0100

132 lines

[git/dials] master: Correct erroneous assertion in parameter_handler and add test. (e80196b7)

DIALS commit

Wed, 23 May 2018 12:28:50 +0100

239 lines

[git/dials] master: In multi-dataset scaling, don't calculate merging statistics of individual datasets by default. (5e3358b0)

DIALS commit

Wed, 23 May 2018 11:09:05 +0100

170 lines

[git/dials] master: set array info (is used in reporting some errors) (b06cd001)

DIALS commit

Wed, 23 May 2018 10:49:41 +0100

79 lines

[git/dials] master: get crystal_symmetry from crystal model directly (072102cf)

DIALS commit

Wed, 23 May 2018 10:48:53 +0100

102 lines

[git/dials_scratch] master: Catch exception when doing line search to test values (7380020)

DIALS Scratch commit

Tue, 22 May 2018 13:07:23 +0100

112 lines

[git/dials_scratch] master: Set entering flag to false because stills (2d88e35)

DIALS Scratch commit

Tue, 22 May 2018 11:24:25 +0100

177 lines

[git/dials] master: Added completion tests for the command line scripts and tidying. (fb2843c2)

DIALS commit

Tue, 22 May 2018 11:14:56 +0100

1243 lines

[git/dials_scratch] master: Added calculation of maximum quantile for predicting all observed reflections (e12c48a)

DIALS Scratch commit

Tue, 22 May 2018 10:51:52 +0100

405 lines

[git/dials_scratch] master: Keep strong pixels in mask (b0ade4a)

DIALS Scratch commit

Tue, 22 May 2018 10:09:04 +0100

169 lines

[git/dials] master: Added missing import to allow assignment in test. (0c33926a)

DIALS commit

Mon, 21 May 2018 21:21:52 +0100

77 lines

[git/dials] master: Remove import from non-longer existing dials.framework. (ed833b69)

DIALS commit

Mon, 21 May 2018 20:42:01 +0100

78 lines

[git/dials_scratch] master: Set strong pixels in mask and use for covariance calculation (43bec78)

DIALS Scratch commit

Mon, 21 May 2018 16:56:12 +0100

160 lines

[git/dials] master: Put back previously failing statements. (d763cf6d)

DIALS commit

Mon, 21 May 2018 16:50:12 +0100

82 lines

[git/dials] master: Actually change over paths to new locations. (249cf536)

DIALS commit

Mon, 21 May 2018 16:48:23 +0100

93 lines

[git/dials_scratch] master: Removing files that have now been moved to dials main. (91fd74c)

DIALS Scratch commit

Mon, 21 May 2018 16:44:51 +0100

139 lines

[git/dials] master: Add in entry points for scaling model. (41a3eaed)

DIALS commit

Mon, 21 May 2018 16:39:29 +0100

125 lines

[git/dials_scratch] master: Remove links to scaling model entry points. (1b46228)

DIALS Scratch commit

Mon, 21 May 2018 16:38:21 +0100

109 lines

[git/dials] master: remove further dials scratch references (4d6d1409)

DIALS commit

Mon, 21 May 2018 16:11:57 +0100

152 lines

[git/dials] master: dials_scratch_scaling_ext -> dials_scaling_ext (4ad34048)

DIALS commit

Mon, 21 May 2018 16:04:20 +0100

299 lines

[git/dials_scratch] master: Moving DGW's row_multiply code into my scaling_ext. (d2217be)

DIALS Scratch commit

Mon, 21 May 2018 15:03:59 +0100

338 lines

[git/dials_scratch] master: Updating multi-dataset scaling code to work with new blocked datastructure. (15494a0)

DIALS Scratch commit

Mon, 21 May 2018 14:53:50 +0100

118 lines

[git/dials_scratch] master: Fixing errors in scaling model plotting. (0d3e76b)

DIALS Scratch commit

Mon, 21 May 2018 14:53:50 +0100

181 lines

[git/dials_scratch] master: Splitting of Ih_table datastructure into blocks for single dataset scaling. (648501b)

DIALS Scratch commit

Mon, 21 May 2018 14:53:50 +0100

114 lines

[git/dials_scratch] master: Removing old files and tidying up tests and unused code. (829a71a)

DIALS Scratch commit

Mon, 21 May 2018 14:53:50 +0100

91 lines

[git/dials_scratch] master: Fix merging stats not logging and code cleaning. (cad998f)

DIALS Scratch commit

Mon, 21 May 2018 14:53:50 +0100

734 lines

[git/dials_scratch] master: Added check for unphysical mosaicity. Improved calculation of observed covariance. Added better weighting dor mle (6aad5e1)

DIALS Scratch commit

Mon, 21 May 2018 14:49:23 +0100

299 lines

[git/dials] master: Remove unused variable, fixes #552. (cd8b2bb6)

DIALS commit

Mon, 21 May 2018 14:17:49 +0100

74 lines

[git/dials_scratch] master: Added check for large eigen value (b3fd069)

DIALS Scratch commit

Mon, 21 May 2018 11:51:58 +0100

87 lines

[git/dials_scratch] master: Added options to fail if bad indexing (a5f1aca)

DIALS Scratch commit

Mon, 21 May 2018 11:47:26 +0100

319 lines

[git/dials] master: use test data from xia2_regression (919d954b)

DIALS commit

Mon, 21 May 2018 10:34:57 +0100

86 lines

[git/dials_scratch] master: Use observed position for initial integration and did clean clutter (96ec984)

DIALS Scratch commit

Mon, 21 May 2018 09:31:52 +0100

394 lines

[git/dials_scratch] master: Use Rotation matrix for transform (c640815)

DIALS Scratch commit

Mon, 21 May 2018 09:28:10 +0100

182 lines

[git/dials] master: Add cosym paper to publications (13ded80a)

DIALS commit

Fri, 18 May 2018 21:01:06 +0100

68 lines

[git/dials] tag 'v1.10.0' created

DIALS commit

Fri, 18 May 2018 13:13:15 +0100

28 lines

[git/dials] master: be slightly less intolerant (5eb4689d)

DIALS commit

Fri, 18 May 2018 12:38:14 +0100

83 lines

[git/dials_scratch] master: Show diff phil (a0f1bb8)

DIALS Scratch commit

Wed, 16 May 2018 09:51:14 +0100

82 lines

[git/dials_scratch] master: Fixed typo (804d7f8)

DIALS Scratch commit

Tue, 15 May 2018 16:06:04 +0100

73 lines

[git/dials_scratch] master: bins must be int (1d94027)

DIALS Scratch commit

Tue, 15 May 2018 16:04:03 +0100

92 lines

[git/dials_scratch] master: Use Agg (2213f1a)

DIALS Scratch commit

Tue, 15 May 2018 16:01:16 +0100

74 lines

[git/dials] master: json output of dials.symmetry results (22b9c64c)

DIALS commit

Tue, 15 May 2018 13:44:52 +0100

279 lines

[git/dials_scratch] master: Did a clean clutter. Also removed old wavelength parameterisation (and angular mosaicity for the moment) since wavelength was being handled incorrectly. Program now refines unit cell, orientation and rlp mosaicity at the same time and integrates everything at the end. The next step will be to add correct handling of wavelength spread. (40b7c8c)

DIALS Scratch commit

Tue, 15 May 2018 11:28:14 +0100

1476 lines

[git/dials_scratch] master: Add experiment testing with wavelength spread (2b9f0a3)

DIALS Scratch commit

Tue, 15 May 2018 11:28:14 +0100

1056 lines

[git/dials_scratch] master: Adding some options and doing some tidying (ef570c4)

DIALS Scratch commit

Tue, 15 May 2018 11:28:14 +0100

538 lines

[git/dials_scratch] master: Write plots to file (28361f8)

DIALS Scratch commit

Tue, 15 May 2018 11:28:14 +0100

127 lines

[git/dials_scratch] master: Added method to generate with wavelength spread (e65fdfc)

DIALS Scratch commit

Tue, 15 May 2018 11:28:14 +0100

610 lines

[git/dials_scratch] master: Add corrgram output (f9a1275)

DIALS Scratch commit

Tue, 15 May 2018 11:28:14 +0100

276 lines

[git/dials] master: Remove warning message from matplotlib.use if plotting something before calling the corrgram function (ae5422ae)

DIALS commit

Tue, 15 May 2018 11:20:43 +0100

78 lines

[git/dials] master: Show miller index white when inverted colour scheme (6584e7c9)

DIALS commit

Tue, 15 May 2018 10:52:47 +0300

117 lines

[git/dials] master: bug fix in output (e620ff91)

DIALS commit

Mon, 14 May 2018 17:30:35 +0100

82 lines

[git/dials] master: backwards compatibility for qe/dqe (fb067e1f)

DIALS commit

Mon, 14 May 2018 13:57:51 +0100

88 lines

[git/dials] master: work around Windows command line limits (2904751f)

DIALS commit

Mon, 14 May 2018 12:30:11 +0100

113 lines

[git/dials] master: clean up tests (5454d4aa)

DIALS commit

Mon, 14 May 2018 12:15:22 +0100

102 lines

[git/dials] master: Clean clutter (4da66fa9)

DIALS commit

Mon, 14 May 2018 09:41:26 +0100

115 lines

[git/dials] master: pickle code review (9d926c09)

DIALS commit

Mon, 14 May 2018 09:30:41 +0100

2814 lines

[git/dials] master: add test dependencies (8b26c3eb)

DIALS commit

Sun, 13 May 2018 22:36:18 +0100

100 lines

[git/dials_scratch] master: Hyperlink DOIs against preferred resolver (917e699)

DIALS Scratch commit

Sat, 12 May 2018 11:13:09 +0100

422 lines

[git/dials] master: Hyperlink DOIs against preferred resolver (f87954f0)

DIALS commit

Sat, 12 May 2018 11:12:13 +0100

433 lines

[git/dials] master: Backwards compatible (d)qe (c59d552b)

DIALS commit

Fri, 11 May 2018 22:00:19 +0100

99 lines

[git/dials] master: Backwards compatible (d)qe (0d9e0a8b)

DIALS commit

Fri, 11 May 2018 21:57:57 +0100

72 lines

[git/dials] master: prefer prf over summation integrated intensities; fix anomalous flag when reading pickle files; now results from json/pickle now closer to results from mtz (although not exactly the same yet, not clear why) (e6a7d52b)

DIALS commit

Fri, 11 May 2018 18:12:23 +0100

277 lines

[git/dials] master: only use reflections with epsilon == 1 in lattice Patterson group symmetry: now works for @graeme-winter P213 small molecule example (bfa8a2a5)

DIALS commit

Fri, 11 May 2018 15:28:15 +0100

95 lines

[git/dials] master: dials.reindex bug fix where reindexing operator was being applied multiple times in multi-sweep (but single crystal) experiments.json (40272998)

DIALS commit

Fri, 11 May 2018 11:31:07 +0100

186 lines

[git/dials_scratch] master: exit more gracefully if no input provided (d1b4184)

DIALS Scratch commit

Fri, 11 May 2018 10:09:06 +0100

89 lines

[git/dials] master: add link to Windows nightly (8bad96c5)

DIALS commit

Fri, 11 May 2018 10:06:13 +0100

146 lines

[git/dials] master: always ensure consistent basis, even when space_group provided (c166d63c)

DIALS commit

Thu, 10 May 2018 13:47:21 +0100

230 lines

[git/dials] master: never add xia2 regression data files to installer (a90e8ea8)

DIALS commit

Thu, 10 May 2018 13:31:25 +0100

77 lines

[git/dials] master: escape windows path characters in .json (ec6addb7)

DIALS commit

Thu, 10 May 2018 13:16:36 +0100

77 lines

[git/dials] master: bug fix: need to use Patterson group when computing epsilon values - using lattice group can lead to inflated CC values (8e832400)

DIALS commit

Thu, 10 May 2018 12:07:09 +0100

138 lines

[git/dials] master: Update documentation (0206d4be)

DIALS commit

Thu, 10 May 2018 08:38:37 +0100

196 lines

[git/dials] master: Use factory function (7a8f3125)

DIALS commit

Wed, 9 May 2018 12:37:51 -0700

124 lines

[git/dials] master: Add error checking to update_geometry. (aa7d8261)

DIALS commit

Wed, 9 May 2018 12:37:51 -0700

137 lines

[git/dials] master: Change to warnings (2e45961b)

DIALS commit

Wed, 9 May 2018 12:37:51 -0700

104 lines

[git/dials] master: Changes needed for lazy reading of models from large imagesets. Namely, don't instantiate ImageSets directly, but use __class__ instead. (29953a46)

DIALS commit

Wed, 9 May 2018 12:37:51 -0700

194 lines

[git/dials] master: More specific exception (c473ccf4)

DIALS commit

Wed, 9 May 2018 12:37:51 -0700

100 lines

[git/dials] master: dials.stills_process: swap order of applying geometry (fa419e21)

DIALS commit

Wed, 9 May 2018 12:37:51 -0700

207 lines

[git/dials] master: don't attempt to plot excessively large matrices: leads to segfault (1ea5af36)

DIALS commit

Wed, 9 May 2018 16:55:57 +0100

79 lines

[git/dials] master: Bug fix for prediction with varying beam but not varying gonio (bbbb4d78)

DIALS commit

Wed, 9 May 2018 16:03:26 +0100

87 lines

[git/dials] master: Removed comment (d2aa14d0)

DIALS commit

Wed, 9 May 2018 15:52:11 +0100

73 lines

[git/dials] master: Removed commented out bits (acbffc07)

DIALS commit

Wed, 9 May 2018 15:52:11 +0100

159 lines

[git/dials] master: Updated test and set to summation if niter > maxiter (b99cc4d5)

DIALS commit

Wed, 9 May 2018 15:52:11 +0100

256 lines

[git/dials] master: Removed checks for negative pixels and modify the variance to take absolute values of background and intensity*profile (04c5c91a)

DIALS commit

Wed, 9 May 2018 15:52:11 +0100

271 lines

[git/dials] master: Add check for params=None (fb107ee8)

DIALS commit

Wed, 9 May 2018 15:52:11 +0100

81 lines

[git/dials] master: Rename DQE -> QE. Fixes #544 (3eed54cd)

DIALS commit

Wed, 9 May 2018 15:48:42 +0100

629 lines

[git/dials] master: dials.plot_scan_varying_crystal -> dials.plot_scan_varying_model Add functionality to plot scan-varying beam centre changes and rename the program appropriately. (a4eb7de4)

DIALS commit

Wed, 9 May 2018 13:42:07 +0100

1819 lines

[git/dials] master: more work on Windows tests (c9001056)

DIALS commit

Wed, 9 May 2018 13:21:58 +0100

166 lines

[git/dials] master: Further address Windows test failures (a173883c)

DIALS commit

Wed, 9 May 2018 13:08:07 +0100

160 lines

[git/dials] master: plot_prefix for more plots (41da2015)

DIALS commit

Wed, 9 May 2018 12:56:50 +0100

164 lines

[git/dials] master: optionally force number of clusters in seed clustering (238a1160)

DIALS commit

Wed, 9 May 2018 12:56:50 +0100

213 lines

[git/dials_scratch] master: Adding tests for targetscaler and scaler factory module. (2553c25)

DIALS Scratch commit

Wed, 9 May 2018 12:11:17 +0100

1900 lines

[git/dials] master: Extend test to exercise scan-varying error setting (83c8071b)

DIALS commit

Wed, 9 May 2018 11:45:41 +0100

80 lines

[git/dials] master: Plot scan-varying cell with error bars. Closes #414. Scan-varying refinement must have been run with the option crystal.unit_cell.set_scan_varying_errors=True for error bars to be available. (36890d70)

DIALS commit

Wed, 9 May 2018 11:45:41 +0100

288 lines

[git/dials] master: Workaround for some libtbx path conversion feature (7f613c02)

DIALS commit

Wed, 9 May 2018 10:59:58 +0100

96 lines

[git/dials] master: Try to fix tests on Windows (d94688f4)

DIALS commit

Wed, 9 May 2018 10:19:40 +0100

347 lines

[git/dials_scratch] master: Adding more-complete tests for core code components. (5ed776a)

DIALS Scratch commit

Tue, 8 May 2018 16:49:29 +0100

2277 lines

[git/dials] master: make sure to close pyplot figures (7549c28e)

DIALS commit

Tue, 8 May 2018 13:59:22 +0100

203 lines

[git/dials] master: Optionally write scan-varying B covariance to refined crystal. (44d6bf36)

DIALS commit

Tue, 8 May 2018 09:54:00 +0100

323 lines

[git/dials] master: python3 compatibility fix (b6687805)

DIALS commit

Tue, 8 May 2018 09:05:00 +0100

251 lines

[git/dials] master: escape file path on Windows (b80445df)

DIALS commit

Tue, 8 May 2018 07:43:31 +0100

94 lines

[git/dials_scratch] master: Bugfix and adding tests. (b8353da)

DIALS Scratch commit

Fri, 4 May 2018 16:33:07 +0100

1310 lines

[git/dials] master: Run C++ tests from python. Closes #553 (da226d79)

DIALS commit

Fri, 4 May 2018 12:54:38 +0100

186 lines

[git/dials] master: Remove old refinement logs and test runner (95d3e061)

DIALS commit

Fri, 4 May 2018 12:37:13 +0100

335 lines

[git/dials] master: dials.refine_bravais_settings: bug fix if experimental models (detector, beam, goniometer, scan,...) differ between experiments; pass refined experiments directly instead of individual models. Fixes #554 (0747f00d)

DIALS commit

Fri, 4 May 2018 10:56:29 +0100

405 lines

[git/dials] master: matplotlib 2.2.2 compatibility fixes (ff05d0fb)

DIALS commit

Fri, 4 May 2018 07:58:07 +0100

182 lines

[git/dials_scratch] master: Adding tests for new free set functionality. (2fdd96a)

DIALS Scratch commit

Thu, 3 May 2018 17:10:02 +0100

816 lines

[git/dials] master: use scipy sparse matrices inside parallel loop to avoid having to pass back and forth dense flex matrix of mostly zeros for memory/performance reasons (96fb05d5)

DIALS commit

Thu, 3 May 2018 17:09:01 +0100

304 lines

[git/dials] master: Modify expected program output (fe7fdad2)

DIALS commit

Thu, 3 May 2018 15:38:33 +0100

131 lines

[git/dials_scratch] master: Added tests for scaling weights module. (32e9ebb)

DIALS Scratch commit

Thu, 3 May 2018 15:33:37 +0100

236 lines

[git/dials] master: parallel computation of rij matrix (3551f24a)

DIALS commit

Thu, 3 May 2018 14:36:33 +0100

402 lines

[git/dials_scratch] master: Moving tests and updating to allow pytest cov. (2b32caf)

DIALS Scratch commit

Thu, 3 May 2018 14:33:38 +0100

152 lines

[git/dials] master: Add distribution of indexed reflections to report (47aac5d9)

DIALS commit

Thu, 3 May 2018 13:53:39 +0100

200 lines

[git/dials_scratch] master: Implemented free set option for targeted scaling also. (9406ed3)

DIALS Scratch commit

Thu, 3 May 2018 12:23:37 +0100

629 lines

[git/dials] master: Properly escape path (c3a8313a)

DIALS commit

Thu, 3 May 2018 09:52:26 +0100

100 lines

[git/dials_scratch] master: Jiffy to find / print hot pixel positions, this time apparently working correctly; derived from astrotbx code so works slightly differently (cd7275a)

DIALS Scratch commit

Thu, 3 May 2018 09:17:49 +0100

222 lines

[git/dials] master: I think this is less complex (634bdfad)

DIALS commit

Thu, 3 May 2018 09:12:59 +0100

95 lines

[git/dials] master: Several tutorial tweaks and fixes (4dcd0ff4)

DIALS commit

Thu, 3 May 2018 09:10:38 +0100

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[git/dials_scratch] master: Added option to split the dataset into a working and free set, to check for overbiasing. (72b7091)

DIALS Scratch commit

Wed, 2 May 2018 21:23:57 +0100

1264 lines

[git/dials] master: procrunner 0.6 contains relevant fixes for Windows (79616851)

DIALS commit

Wed, 2 May 2018 14:46:47 +0100

72 lines

[git/dials] master: Enable builds and tests on travis-ci.org (a152a685)

DIALS commit

Wed, 2 May 2018 08:43:59 +0100

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[git/dials_scratch] master: Updating of targeted scaling to allow cif file input. (6fd6211)

DIALS Scratch commit

Tue, 1 May 2018 16:49:18 +0100

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[git/dials] master: add plot_prefix parameter (3bc581da)

DIALS commit

Tue, 1 May 2018 16:03:07 +0100

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[git/dials_scratch] master: Implementation of iterative reweighting schemes. (a7dfa14)

DIALS Scratch commit

Tue, 1 May 2018 11:10:18 +0100

724 lines

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