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June 2019

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Subject	From	Date	Size
[git/dials] master: Clean clutter (cd2a10e4a)	DIALS commit	Sun, 30 Jun 2019 05:10:24 +0100	266 lines
[git/dials] master: Remove ancient xfailing test, fixes #735 (9fbbe0a6c)	DIALS commit	Fri, 28 Jun 2019 13:57:40 +0100	157 lines
[git/dials] master: Allow dials.split_experiments to use an optional ouput filename suffix. (70d82c677)	DIALS commit	Thu, 27 Jun 2019 14:46:42 -0700	163 lines
[git/dials] master: Use cp_op_inp_min calculated by metric_subgroups. (b587c0c6e)	DIALS commit	Wed, 26 Jun 2019 13:33:38 +0100	227 lines
[git/dials] master: move ma_tmp computation outside of loop as doesn't vary between loops (aa66b5ed6)	DIALS commit	Wed, 26 Jun 2019 13:23:06 +0100	150 lines
[git/dials] master: need to pass format_kwargs to format_class (83d8aad01)	DIALS commit	Mon, 24 Jun 2019 17:18:42 +0100	195 lines
[git/dials] master: update xfail test for #693 to no longer xfail (deb69424b)	DIALS commit	Mon, 24 Jun 2019 12:00:01 +0100	197 lines
[git/dials] master: Port in hitfinder from xtc_process (#344) (0c5a31b48)	DIALS commit	Sun, 23 Jun 2019 13:26:21 +0900	186 lines
[git/dials_scratch] master: Clean clutter (5003d3a)	DIALS Scratch commit	Sun, 23 Jun 2019 05:10:23 +0100	113 lines
[git/dials] master: gently nudge away from halraiser (02cbd57ae)	DIALS commit	Sat, 22 Jun 2019 19:09:28 +0100	143 lines
[git/dials] master: Add some user-friendly text to warn of SADABS weirdness (9239096c1)	DIALS commit	Fri, 21 Jun 2019 16:35:40 +0100	220 lines
[git/dials] master: tighten thumbscrews to 60% (f1ebfaece)	DIALS commit	Fri, 21 Jun 2019 10:31:28 +0100	87 lines
[git/dials] master: travis: run off dxtbx master branch (c9f7208c8)	DIALS commit	Fri, 21 Jun 2019 10:20:45 +0100	272 lines
[git/dials] master: Remove test_integration_summation_2d.py (c673ddcb6)	DIALS commit	Thu, 20 Jun 2019 15:53:24 +0100	359 lines
[git/dials] master: address lgtm issues (2c0859e36)	DIALS commit	Thu, 20 Jun 2019 15:53:24 +0100	1707 lines
[git/dials] master: final attempt to fix test failures (#813) (fbbdbe7fd)	DIALS commit	Thu, 20 Jun 2019 12:14:06 +0100	93 lines
[git/dials] master: remove reference to dev.dials.* in comments (05a71f5eb)	DIALS commit	Thu, 20 Jun 2019 10:53:28 +0100	111 lines
[git/dials_scratch] master: synch with index-refactor changes (62d5e7f)	DIALS Scratch commit	Thu, 20 Jun 2019 10:41:06 +0100	579 lines
[git/dials] master: The curious incident of the disappearing highest resolution reflection (9e1edb7b4)	DIALS commit	Wed, 19 Jun 2019 15:23:55 +0100	185 lines
[git/dials] master: Clean clutter (327a64b4f)	DIALS commit	Wed, 19 Jun 2019 11:03:17 +0100	864 lines
[git/dials] master: Add a .clang-format to configure C++ formatting (8f87a7bf8)	DIALS commit	Wed, 19 Jun 2019 10:32:05 +0100	132 lines
[git/dials] master: Update scaling section of tutorial to point to html report. (131c56686)	DIALS commit	Tue, 18 Jun 2019 16:15:31 -0500	180 lines
[git/dials] master: Fix website build (a64abb939)	DIALS commit	Tue, 18 Jun 2019 17:09:58 +0100	87 lines
[git/dials] master: rename to dev.dials.show_test_failure_reasons (d250a49d4)	DIALS commit	Mon, 17 Jun 2019 09:56:10 +0100	342 lines
[git/dials] master: Add new command dev.dials.test_failure_reasons (8ce30a72a)	DIALS commit	Mon, 17 Jun 2019 09:39:30 +0100	213 lines
[git/dials] master: Start a requirements_dev.txt (79ea5ea80)	DIALS commit	Mon, 17 Jun 2019 08:25:42 +0100	95 lines
[git/dials] master: Reseed for every test run (cb094e7e3)	DIALS commit	Sun, 16 Jun 2019 10:09:57 +0100	108 lines
[git/dials] master: set random seed (d05773521)	DIALS commit	Sat, 15 Jun 2019 12:11:35 +0100	119 lines
[git/dials] master: Disable unstable test, #813 (fb639a280)	DIALS commit	Sat, 15 Jun 2019 11:08:21 +0100	103 lines
[git/dials] master: tidy up test_masking (ca61f89c4)	DIALS commit	Fri, 14 Jun 2019 13:03:48 +0100	534 lines
[git/dials] master: Remove dials.batch_analysis and calc_rmsds (#810) (3e319474b)	DIALS commit	Fri, 14 Jun 2019 11:29:54 +0100	245 lines
[git/dials] master: move RLV code out of command_line to util (f5d9e9050)	DIALS commit	Fri, 14 Jun 2019 11:10:29 +0100	75 lines
[git/dials] master: move fixtures to conftest.py (aac540e1f)	DIALS commit	Fri, 14 Jun 2019 11:09:29 +0100	256 lines
[git/dials] master: add pytest-mock to dependencies (06fbbd942)	DIALS commit	Thu, 13 Jun 2019 17:17:58 +0100	84 lines
[git/dials] master: test on integrated data; found bug (5d6f17372)	DIALS commit	Thu, 13 Jun 2019 17:06:17 +0100	290 lines
[git/dials] master: fix test (f1a5b364c)	DIALS commit	Thu, 13 Jun 2019 16:34:00 +0100	292 lines
[git/dials] master: some refactoring of reciprocal lattice viewer; feat. tests (b933158a6)	DIALS commit	Thu, 13 Jun 2019 16:27:57 +0100	2253 lines
[git/dials] master: Revert "update test_export_best after spotfinding changes" (0e2c4b05c)	DIALS commit	Thu, 13 Jun 2019 16:05:25 +0100	302 lines
[git/dials] master: fix RLV for lattice vectors broken by 01921d5feac6fdda61bd3c196c741a2e8bdcc8d6 (bae377643)	DIALS commit	Thu, 13 Jun 2019 14:35:37 +0100	106 lines
[git/dials] master: Add help text for scan-varying plots, for #417. (87260154f)	DIALS commit	Thu, 13 Jun 2019 12:00:43 +0100	155 lines
[git/dials] master: Move test to a more appropriate location. (189a2b76b)	DIALS commit	Thu, 13 Jun 2019 10:54:21 +0100	708 lines
[git/dials] master: Unit tests for CentroidOutlier classes. (49cdb79e2)	DIALS commit	Thu, 13 Jun 2019 10:47:20 +0100	208 lines
[git/dials] master: Split up test into smaller tests (4f54dc3d7)	DIALS commit	Wed, 12 Jun 2019 19:08:08 +0100	282 lines
[git/dials] master: Fix apparent bug in the test. (cc5befa91)	DIALS commit	Wed, 12 Jun 2019 15:39:13 +0100	98 lines
[git/dials] master: Remove obsolete command line program and its test. (dd85d41a3)	DIALS commit	Wed, 12 Jun 2019 14:50:38 +0100	1702 lines
[git/dials] master: Don't raise Sorry from algorithms/refinement/ (b932e354a)	DIALS commit	Wed, 12 Jun 2019 14:25:47 +0100	1717 lines
[git/dials] master: For #816 - revert default spot finder (caa46334d)	DIALS commit	Wed, 12 Jun 2019 12:59:16 +0100	125 lines
[git/dials] master: More robust choice amongst detector parameterisations. (5533d4cf9)	DIALS commit	Wed, 12 Jun 2019 11:29:55 +0100	268 lines
[git/dials] master: Tests of Refiner construction with various configurations. (ffdc2c248)	DIALS commit	Wed, 12 Jun 2019 11:00:16 +0100	191 lines
[git/dials] master: if spacegroup is set output in best setting (#814) (6cb2ce750)	DIALS commit	Tue, 11 Jun 2019 17:41:22 +0100	241 lines
[git/dials] master: all your sorts are stable (cctbx/cctbx_project/@4354713) (f148d48db)	DIALS commit	Tue, 11 Jun 2019 16:26:45 +0100	529 lines
[git/dials] master: strong and stable sorting (9e316a2e2)	DIALS commit	Tue, 11 Jun 2019 15:49:06 +0100	476 lines
[git/dials] master: Mitigation now in place for entire package (0d3638b94)	DIALS commit	Tue, 11 Jun 2019 14:16:25 +0100	93 lines
[git/dials] master: fix xfailing test #814 (7e3a9dc89)	DIALS commit	Tue, 11 Jun 2019 13:42:28 +0100	218 lines
[git/dials] master: Copy over dxtbx test setup for future Python3 work (20744e1ad)	DIALS commit	Tue, 11 Jun 2019 13:02:19 +0100	141 lines
[git/dials] master: Remove unused command-line program, for #812 (f711fc5bb)	DIALS commit	Tue, 11 Jun 2019 12:29:23 +0100	268 lines
[git/dials] master: add xfailing test for #814 (ddd50a56a)	DIALS commit	Tue, 11 Jun 2019 12:03:12 +0100	139 lines
[git/dials] master: fix tutorial generation for dials_data v2.0+ (3ea127b46)	DIALS commit	Tue, 11 Jun 2019 08:00:43 +0100	110 lines
[git/dials] master: remove export_json dependency on command_line/reciprocal_lattice_viewer.py (2b430ef41)	DIALS commit	Mon, 10 Jun 2019 17:28:16 +0100	273 lines
[git/dials] master: Refactor dials.filter_reflections (fa7a06479)	DIALS commit	Mon, 10 Jun 2019 17:06:19 +0100	2214 lines
[git/dials] master: Refactor filtering methods to better handle exceptions (1238d8f82)	DIALS commit	Mon, 10 Jun 2019 17:06:19 +0100	1673 lines
[git/dials] master: Refactor command line scripts that depend on filter_reflections. (873359ed2)	DIALS commit	Mon, 10 Jun 2019 17:06:19 +0100	2452 lines
[git/dials_data] master: Minor documentation update (#59) (c8f2332)	dials-data commit	Mon, 10 Jun 2019 15:21:50 +0100	130 lines
[git/dials_data] master: Enable precommits for dials-data repository (#58) (3c4f714)	dials-data commit	Mon, 10 Jun 2019 15:11:06 +0100	90 lines
[git/dials_data] master: Drop Python 3.4 support (#60) (da5926e)	dials-data commit	Mon, 10 Jun 2019 15:10:43 +0100	170 lines
[git/dials] master: Fix warning about deprecated BaseException.message (60f3d8157)	DIALS commit	Mon, 10 Jun 2019 15:04:04 +0100	92 lines
[git/dials] master: Add missed newsfragment for fix to #795 (e9cc8ab6e)	DIALS commit	Mon, 10 Jun 2019 14:56:42 +0100	76 lines
[git/dials] master: Update to newer dials data version (d5063f4bd)	DIALS commit	Mon, 10 Jun 2019 14:52:16 +0100	141 lines
[git/dials] master: Per-image-analysis matplotlib move (#796) (5f595583c)	DIALS commit	Mon, 10 Jun 2019 14:33:51 +0100	433 lines
[git/dials] master: Revert "Don't set matplotlib backend in per_image_analysis" (fc6351d42)	DIALS commit	Mon, 10 Jun 2019 14:30:06 +0100	602 lines
[git/dials_data] master: Merge pull request #48 from dials/pytest-plugin (6203d6c)	dials-data commit	Mon, 10 Jun 2019 14:24:08 +0100	89 lines
[git/dials] master: Ignore some warnings when running pytest (ca8023b1a)	DIALS commit	Mon, 10 Jun 2019 14:21:59 +0100	98 lines
[git/dials] master: fix broken .rst (0ac21e564)	DIALS commit	Mon, 10 Jun 2019 08:45:12 +0100	186 lines
[git/dials] master: Code cleanup (018e47259)	DIALS commit	Mon, 10 Jun 2019 08:31:19 +0100	584 lines
[git/dials] master: Drop try: except: import (38fa3ada7)	DIALS commit	Mon, 10 Jun 2019 08:10:25 +0100	287 lines
[git/dials] master: lgtm (72e3083b7)	DIALS commit	Sun, 9 Jun 2019 23:12:14 +0100	667 lines
[git/dials] master: remove dead code (fbe95f280)	DIALS commit	Sun, 9 Jun 2019 19:26:55 +0100	563 lines
[git/dials] master: Clean clutter (5e7e15e0d)	DIALS commit	Sun, 9 Jun 2019 05:10:26 +0100	551 lines
[git/dials] master: Move test droppings into tmpdir (98ccee407)	DIALS commit	Sat, 8 Jun 2019 22:40:35 +0100	137 lines
[git/dials] master: Clean up (d6d84846a)	DIALS commit	Sat, 8 Jun 2019 22:40:02 +0100	111 lines
[git/dials] master: Add coverage badge to README (986ec4461)	DIALS commit	Sat, 8 Jun 2019 21:43:08 +0100	112 lines
[git/dials] master: update test_export_best after spotfinding changes (fabb96340)	DIALS commit	Sat, 8 Jun 2019 21:26:59 +0100	293 lines
[git/dials] master: use algorithm=dispersion to fix test (e052829dc)	DIALS commit	Sat, 8 Jun 2019 21:17:10 +0100	89 lines
[git/dials] master: lgtm issues (f5831ef9a)	DIALS commit	Sat, 8 Jun 2019 19:58:05 +0100	1730 lines
[git/dials] master: Add libtbx_config to black's non .py whitelist (526fc43cb)	DIALS commit	Sat, 8 Jun 2019 00:22:00 +0100	188 lines
[git/dials] master: Do not install futures in Python 3 enviroments (b4eddd578)	DIALS commit	Sat, 8 Jun 2019 00:13:46 +0100	91 lines
[git/dials] master: address lgtm and flake8 issues (53061e0a5)	DIALS commit	Fri, 7 Jun 2019 23:11:03 +0100	136 lines
[git/dials] master: remove untested (and probably unused) command line program (fdf43bd1f)	DIALS commit	Fri, 7 Jun 2019 22:37:29 +0100	275 lines
[git/dials] master: Index refactor (#805) (6b5f05af4)	DIALS commit	Fri, 7 Jun 2019 21:01:40 +0100	308 lines
[git/dials] master: Aftershocks of spot finding merge (2d05fa9e4)	DIALS commit	Fri, 7 Jun 2019 14:05:56 +0100	90 lines
[git/dials] master: Mole 1/N (cf241b584)	DIALS commit	Fri, 7 Jun 2019 13:40:21 +0100	95 lines
[git/dials] master: Spot finding tests (988db6550)	DIALS commit	Fri, 7 Jun 2019 13:04:25 +0100	321 lines
[git/dials] master: set up towncrier infrastructure (52eefdbc1)	DIALS commit	Fri, 7 Jun 2019 12:24:17 +0100	101 lines
[git/dials] master: Merge pull request #758 from dials/improve_spotfinding (137eff728)	DIALS commit	Fri, 7 Jun 2019 12:02:37 +0100	208 lines
[git/dials] master: Add placeholder file for release notes (a7966d9db)	DIALS commit	Fri, 7 Jun 2019 12:01:32 +0100	75 lines
[git/dials] master: Raise Sorry messages rather than assertions for filtered dataset. (d2d852ff5)	DIALS commit	Fri, 7 Jun 2019 11:50:14 +0100	518 lines
[git/dials] master: Typo: x->y (877a61a94)	DIALS commit	Fri, 7 Jun 2019 11:49:31 +0100	95 lines
[git/dials] master: Flake8 cleanup (ad5e145bc)	DIALS commit	Fri, 7 Jun 2019 11:48:32 +0100	241 lines
[git/dials] master: Precommitbx: add SQLite (512de9e35)	DIALS commit	Fri, 7 Jun 2019 11:33:11 +0100	1058 lines
[git/dials] master: Merge pull request #751 from dials/refine_2.0 (36b1c5cd4)	DIALS commit	Fri, 7 Jun 2019 11:13:06 +0100	107 lines
[git/dials] master: Placate flake8: (243487d68)	DIALS commit	Fri, 7 Jun 2019 11:09:15 +0100	498 lines
[git/dials] master: Unused and useless temp assignment; will be caught in next line anyway (16eb56cda)	DIALS commit	Fri, 7 Jun 2019 11:09:15 +0100	113 lines
[git/dials] master: This flex shadows dials imported flex at the top; should work the same (578e15fa3)	DIALS commit	Fri, 7 Jun 2019 11:09:15 +0100	94 lines
[git/dials] master: Bug fix: sys needed for sys.exit (6bd915025)	DIALS commit	Fri, 7 Jun 2019 08:45:16 +0100	81 lines
[git/dials] master: Update docstrings (e69b111ff)	DIALS commit	Fri, 7 Jun 2019 08:45:16 +0100	248 lines
[git/dials] master: Minimal changes to tutorials for dials.refine changes (83820834d)	DIALS commit	Fri, 7 Jun 2019 08:45:16 +0100	360 lines
[git/dials] master: Fix refinement tests for new default scan_varying=Auto (e9f854829)	DIALS commit	Fri, 7 Jun 2019 08:45:16 +0100	251 lines
[git/dials] master: Rewrite dials.refine following functional interface guidelines (179e4cd65)	DIALS commit	Fri, 7 Jun 2019 08:45:16 +0100	2182 lines
[git/dials] master: Make scan_varying=Auto a dials.refine override. (3207ee58a)	DIALS commit	Fri, 7 Jun 2019 08:45:16 +0100	285 lines
[git/dials] master: Document new scan_varying=Auto options (968714149)	DIALS commit	Fri, 7 Jun 2019 08:45:16 +0100	132 lines
[git/dials] master: Set reflection flags after each macrocycle (8c3d0c591)	DIALS commit	Fri, 7 Jun 2019 08:45:16 +0100	385 lines
[git/dials] master: Define behaviour of scan_varying=Auto (eb800d5c8)	DIALS commit	Fri, 7 Jun 2019 08:45:16 +0100	180 lines
[git/dials] master: Allow the number of macrocycles of static refinement to be set (0b556935f)	DIALS commit	Fri, 7 Jun 2019 08:45:16 +0100	156 lines
[git/dials] master: fix broken test logic (8718ebd81)	DIALS commit	Thu, 6 Jun 2019 16:13:59 +0100	161 lines
[git/dials] master: precommitbx: build libffi (f809cd500)	DIALS commit	Thu, 6 Jun 2019 12:09:03 +0100	255 lines
[git/dials] master: Remove use of sorry from non-cmd export code. (48205da3a)	DIALS commit	Thu, 6 Jun 2019 09:36:02 +0100	896 lines
[git/dials] master: Fix dials.export format=json (5f2e6fcc5)	DIALS commit	Thu, 6 Jun 2019 09:23:44 +0100	174 lines
[git/dials] master: Fix assign_identifiers bug introduced in #7383e9a (22c7c4c12)	DIALS commit	Thu, 6 Jun 2019 09:09:27 +0100	99 lines
[git/dials] master: fix spacing in error message (80b97ce01)	DIALS commit	Thu, 6 Jun 2019 08:48:20 +0100	118 lines
[git/dials] master: Fix dials.rl_png command (01921d5fe)	DIALS commit	Thu, 6 Jun 2019 08:44:35 +0100	392 lines
[git/dials] master: Add .flake8 file for manual validation (003b64b7c)	DIALS commit	Thu, 6 Jun 2019 08:41:41 +0100	89 lines
[git/dials] master: Replace Sorry calls with ValueError where appropriate. (7383e9a1e)	DIALS commit	Thu, 6 Jun 2019 08:38:25 +0100	1664 lines
[git/dials] master: Replace some Sorry exceptions in scaling. (26440c6c0)	DIALS commit	Thu, 6 Jun 2019 08:38:25 +0100	914 lines
[git/dials] master: RLV: imagesets -> experiments (0d9ed724f)	DIALS commit	Wed, 5 Jun 2019 16:33:03 +0100	642 lines
[git/dials] master: Flake8 and tidy per_image_analysis.py (917d3a01e)	DIALS commit	Wed, 5 Jun 2019 16:29:29 +0100	448 lines
[git/dials] master: Don't set matplotlib backend in per_image_analysis (61ad42adf)	DIALS commit	Wed, 5 Jun 2019 16:29:29 +0100	593 lines
[git/dials] master: Restore reflection selection in reciprocal_lattice_viewer (83a785573)	DIALS commit	Wed, 5 Jun 2019 16:10:08 +0100	108 lines
[git/dials] master: This is true by default. (0a3422a4c)	DIALS commit	Tue, 4 Jun 2019 15:07:39 +0100	136 lines
[git/dials] master: Remove setpaths* from installer (84bfad925)	DIALS commit	Tue, 4 Jun 2019 10:39:26 +0100	137 lines
[git/dials] master: Remove option to specify space group in dials.scale (8914e885d)	DIALS commit	Mon, 3 Jun 2019 09:41:43 +0100	667 lines
[git/dials] master: Remove custom pytest marker from dials.scale tests (a3c3efb63)	DIALS commit	Mon, 3 Jun 2019 09:41:43 +0100	190 lines
[git/dials_scratch] master: Clean clutter (ea4b8b5)	DIALS Scratch commit	Sun, 2 Jun 2019 05:12:34 +0100	224 lines
[git/dials] master: Clean clutter (4fb77c819)	DIALS commit	Sun, 2 Jun 2019 05:12:01 +0100	105 lines
[git/dials_data] master: Scheduled monthly dependency update for June (#57) (33ceb24)	dials-data commit	Sat, 1 Jun 2019 20:09:40 +0100	145 lines
[git/dials] master: run black (ef2abb750)	DIALS commit	Fri, 24 May 2019 21:48:12 +0100	249 lines
[git/dials] master: address lgtm issues (00559901a)	DIALS commit	Fri, 24 May 2019 21:46:36 +0100	106 lines

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June 2019

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