|
|
|
|
Size
|
[git/dials_scratch] master: Remove old scaling command line scripts (fe19b79)
|
DIALS Scratch commit |
Fri, 31 Aug 2018 14:51:32 +0100 |
2515 lines |
[git/dials] master: Update dials.show test to not test exact string output (add2749d7)
|
DIALS commit |
Fri, 31 Aug 2018 14:22:29 +0100 |
535 lines |
[git/dials] master: Add test for running dials.show on a reflection table pickle file (865668bc)
|
DIALS commit |
Fri, 31 Aug 2018 12:35:25 +0100 |
511 lines |
[git/dials] master: Add simple test for completion of dials.export format=mmcif (c54717b2)
|
DIALS commit |
Fri, 31 Aug 2018 11:49:55 +0100 |
116 lines |
[git/dials] master: Update prf to profile in a few more places (4fced70c)
|
DIALS commit |
Fri, 31 Aug 2018 10:48:46 +0100 |
129 lines |
[git/dials] master: Rename prf to profile for export and scaling options (43ae85a9)
|
DIALS commit |
Thu, 30 Aug 2018 15:20:14 +0100 |
441 lines |
[git/dials] master: Make use of pyplot.subplots squeeze parameter (ab4e96e8)
|
DIALS commit |
Wed, 29 Aug 2018 16:05:01 +0100 |
109 lines |
[git/dials] master: use more realistic unit cell volume/d_min in tests (9a275f10)
|
DIALS commit |
Wed, 29 Aug 2018 11:57:34 +0100 |
92 lines |
[git/dials] master: apply change of basis op to input space group (48b26a60)
|
DIALS commit |
Wed, 29 Aug 2018 11:56:55 +0100 |
90 lines |
[git/dials] master: fix test (c07cac92)
|
DIALS commit |
Wed, 29 Aug 2018 11:18:57 +0100 |
111 lines |
[git/dials] master: factor out symmetry_base class; use in determine_space_groups and cosym (7c7b15aa)
|
DIALS commit |
Wed, 29 Aug 2018 10:28:55 +0100 |
2014 lines |
[git/dials] tag 'v1.11.0' created
|
DIALS commit |
Wed, 22 Aug 2018 23:59:35 +0100 |
38 lines |
[git/dials] master: Add files for source distribution bundle (5b3be4f9)
|
DIALS commit |
Wed, 22 Aug 2018 23:57:52 +0100 |
144 lines |
[git/dials] master: Undo part of #606 (635681ec)
|
DIALS commit |
Wed, 22 Aug 2018 09:31:43 +0100 |
170 lines |
[git/dials] master: Refactor export mtz (#606) (fa58d6c8)
|
DIALS commit |
Wed, 22 Aug 2018 08:40:04 +0100 |
250 lines |
[git/dials_scratch] master: Add prototype stills indexer (516a9c8)
|
DIALS Scratch commit |
Tue, 21 Aug 2018 14:38:55 +0100 |
73 lines |
[git/dials] master: combine_experiments: Combine imagesets if same (a4691043)
|
DIALS commit |
Tue, 21 Aug 2018 14:26:11 +0100 |
148 lines |
[git/dials] master: (image_)viewer: Tidy up some wx syntax and behaviour (7cbc4394)
|
DIALS commit |
Tue, 21 Aug 2018 11:05:44 +0100 |
562 lines |
[git/dials] master: Add dials.scale to list of documented programs, #607 (1b4801ec)
|
DIALS commit |
Fri, 17 Aug 2018 08:51:56 +0100 |
82 lines |
[git/dials] master: Edit scaling help_message to allow successful documentation build (1fff9e5c)
|
DIALS commit |
Thu, 16 Aug 2018 14:23:48 +0100 |
163 lines |
[git/dials] master: More user-friendly image numbering to specify frames to work on. This uses image numbering specified by the scan rather than elements of the imageset.indices (which may not match) (eda6d1be)
|
DIALS commit |
Wed, 15 Aug 2018 15:53:27 +0100 |
180 lines |
[git/dials] master: Bug fix: do not crash when there are no non-background pixels (77cce251)
|
DIALS commit |
Wed, 15 Aug 2018 15:53:27 +0100 |
115 lines |
[git/dials_scratch] master: Moved command_line/intensity_explorer.py to dials/util. (acc71b7)
|
DIALS Scratch commit |
Wed, 15 Aug 2018 15:07:54 +0100 |
1070 lines |
[git/dials_scratch] master: Just another TODO before moving to dials/util. (0236631)
|
DIALS Scratch commit |
Wed, 15 Aug 2018 15:04:58 +0100 |
90 lines |
[git/dials] master: Update default scaling options (91c11881)
|
DIALS commit |
Wed, 15 Aug 2018 14:57:43 +0100 |
329 lines |
[git/dials_scratch] master: A couple of notes to self/whoever (abc49a5)
|
DIALS Scratch commit |
Wed, 15 Aug 2018 13:00:47 +0100 |
106 lines |
[git/dials_scratch] master: Make probplots, etc., work from reflection_table input (60331d8)
|
DIALS Scratch commit |
Wed, 15 Aug 2018 12:59:51 +0100 |
782 lines |
[git/dials] master: Add program documentation page for dials.scale (088cc0e9)
|
DIALS commit |
Wed, 15 Aug 2018 11:21:26 +0100 |
308 lines |
[git/dials] master: Update flex.reflection_table().help_keys() (445ecc52)
|
DIALS commit |
Tue, 14 Aug 2018 21:19:56 +0100 |
402 lines |
[git/dials] master: Add tests for merging stats method of scaling script (be3994bc)
|
DIALS commit |
Tue, 14 Aug 2018 21:19:56 +0100 |
464 lines |
[git/dials] master: Add scaling information to data_files documentation (3405222f)
|
DIALS commit |
Tue, 14 Aug 2018 21:19:56 +0100 |
745 lines |
[git/dials_scratch] master: A use{ful, less} learning exercise for later. (370999b)
|
DIALS Scratch commit |
Tue, 14 Aug 2018 18:10:12 +0100 |
116 lines |
[git/dials_scratch] master: Just an overnight commit. (aea2207)
|
DIALS Scratch commit |
Tue, 14 Aug 2018 18:10:12 +0100 |
460 lines |
[git/dials] master: Fix bug for MTZs with missing observations (420c7059)
|
DIALS commit |
Tue, 14 Aug 2018 13:41:28 +0100 |
126 lines |
[git/dials] master: Improve testing of scaling script (86f99456)
|
DIALS commit |
Tue, 14 Aug 2018 13:12:40 +0100 |
612 lines |
[git/dials_scratch] master: Modified weighting (f521e9a)
|
DIALS Scratch commit |
Tue, 14 Aug 2018 12:02:58 +0100 |
406 lines |
[git/dials] master: Add test for multi-dataset intensity combining for scaling (b023783f)
|
DIALS commit |
Mon, 13 Aug 2018 16:51:19 +0100 |
421 lines |
[git/dials] master: Improve docstring examples (74761d8f)
|
DIALS commit |
Mon, 13 Aug 2018 16:05:35 +0100 |
102 lines |
[git/dials] master: dev.dials.filter_reflections --> dials.filter_reflections (db0bc30b)
|
DIALS commit |
Mon, 13 Aug 2018 16:05:35 +0100 |
151 lines |
[git/dials] master: Add selection by experiment id and panel number. (7a47c178)
|
DIALS commit |
Mon, 13 Aug 2018 16:05:35 +0100 |
155 lines |
[git/dials] master: Extend test to cover id, panel and resolution filters (97529bec)
|
DIALS commit |
Mon, 13 Aug 2018 16:05:35 +0100 |
183 lines |
[git/dials] master: Incorporated functionality of dev.dials.filter_good_intensities. This behaviour is controlled by select_good_intensities=True. The script dev.dials.filter_good_intensities is removed. (070a9e1b)
|
DIALS commit |
Mon, 13 Aug 2018 16:05:35 +0100 |
355 lines |
[git/dials] master: Replace confusing flag filtering with versatile selection logic. Instead of 'inclusion' and 'exclusion' options just evaluate a boolean expression passed as a string, like those given in the examples. (a2810a1b)
|
DIALS commit |
Mon, 13 Aug 2018 16:05:35 +0100 |
630 lines |
[git/dials] master: Calculate d column if required and experiments have been provided (a83a786c)
|
DIALS commit |
Mon, 13 Aug 2018 16:05:35 +0100 |
123 lines |
[git/dials] master: Incorporated functionality of dev.dials.filter_dead_time. See dead_time phil scope. The script dev.dials.filter_dead_time is removed. (90bbde41)
|
DIALS commit |
Mon, 13 Aug 2018 16:05:35 +0100 |
686 lines |
[git/dials] master: Make sure negative intensities don't affect intensity combination weights (afdb88eb)
|
DIALS commit |
Mon, 13 Aug 2018 15:59:31 +0100 |
117 lines |
[git/dials] master: Do correct partiality correction for variance (0488a5e5)
|
DIALS commit |
Mon, 13 Aug 2018 15:18:49 +0100 |
119 lines |
[git/dials] master: Take care of missing partiality check in combine intensities (df5479ce)
|
DIALS commit |
Mon, 13 Aug 2018 14:35:04 +0100 |
251 lines |
[git/dials] master: Include partiality correction for scaling for sum intensities (35de144f)
|
DIALS commit |
Mon, 13 Aug 2018 13:47:57 +0100 |
177 lines |
[git/dials] master: remove show_panel_distance parameter now distance printed as part of panel (e67c82d0)
|
DIALS commit |
Mon, 13 Aug 2018 13:42:50 +0100 |
263 lines |
[git/dials] master: panel now prints distance along normal (19dbad4c)
|
DIALS commit |
Mon, 13 Aug 2018 13:40:36 +0100 |
109 lines |
[git/dials_scratch] master: Clean clutter (0a15ca5)
|
DIALS Scratch commit |
Mon, 13 Aug 2018 08:14:40 +0100 |
80 lines |
[git/dials] master: Add intensity_choice=combine option to optimise prf/sum combination (0fb89642)
|
DIALS commit |
Fri, 10 Aug 2018 16:26:50 +0100 |
1387 lines |
[git/dials] master: Fix bug in which centroid_outlier flag was set incorrectly (6383d19a)
|
DIALS commit |
Fri, 10 Aug 2018 15:47:09 +0100 |
89 lines |
[git/dials] master: Set excluded_for_refinement flag in refined.pickle Also set predicted flag, which had been overlooked before. (9f7eab28)
|
DIALS commit |
Fri, 10 Aug 2018 15:47:09 +0100 |
192 lines |
[git/dials] master: Add an excluded_for_refinement flag This is to flag the reflections that are thrown out even before centroid outlier rejection (839ff9b5)
|
DIALS commit |
Fri, 10 Aug 2018 15:47:09 +0100 |
131 lines |
[git/dials] master: Exclude based on bad_in_refinement flag. Fixes #599 (fecbf729)
|
DIALS commit |
Fri, 10 Aug 2018 15:47:09 +0100 |
102 lines |
[git/dials] master: this is not how you escape the string format operator in Python (bf14673e)
|
DIALS commit |
Fri, 10 Aug 2018 13:39:34 +0100 |
84 lines |
[git/dials] master: Significance filter now removes experiments from a multi-experiment dataset that have no reflections left after filtering (4bb1a0cd)
|
DIALS commit |
Wed, 8 Aug 2018 10:07:52 -0700 |
244 lines |
[git/dials] master: Update for corrected resolution calculation. Following cctbx/cctbx_project@3e21789, values in the best.dat file have changed. (59590fc9)
|
DIALS commit |
Wed, 8 Aug 2018 15:26:13 +0100 |
146 lines |
[git/dials] master: These are 'panel' methods, not 'detector' methods (91a4e5ba)
|
DIALS commit |
Wed, 8 Aug 2018 15:20:48 +0100 |
114 lines |
[git/dials] master: Do not need the workaround with this routine of PHIL acrobatics (thanks @jmp1985) (4764b9bf)
|
DIALS commit |
Wed, 8 Aug 2018 11:11:12 +0100 |
96 lines |
[git/dials] master: Label X axis ticks by d-spacing (Å) rather than 1/d^2 values (better for human crystallographers) (39cf3177)
|
DIALS commit |
Tue, 7 Aug 2018 16:31:13 +0100 |
107 lines |
[git/dials] master: Add masking to dials.background No longer need to set exclude_negative or explicitly calculate hot pixels as it is handled by the MaskGenerator and trusted_range. Also now can mask out regions such as backstop that should not be included in the calculation, and set resolution limits. (bdaf273a)
|
DIALS commit |
Tue, 7 Aug 2018 16:31:13 +0100 |
310 lines |
[git/dials] master: Tidy up (271d10e2)
|
DIALS commit |
Tue, 7 Aug 2018 16:31:13 +0100 |
162 lines |
[git/dials] master: Update dataset tests to inspect the results, checking Rpim and CC1/2 (88895ea3)
|
DIALS commit |
Tue, 7 Aug 2018 14:24:09 +0100 |
313 lines |
[git/dials] master: Allow experiments as input. Refined geometry provides better resolution-at-pixel values. (de16c15f)
|
DIALS commit |
Tue, 7 Aug 2018 10:43:07 +0100 |
170 lines |
[git/dials] master: Update test to accommodate change to average background calculation. Assuming de194e5 is correct then fixing the test means updating the expected output. @graeme-winter, please could you review the change in de194e5, which slightly alters the calculation of the background radial profile? I think the change is correct, but I think it is worth you looking as the original author. (47bf90cf)
|
DIALS commit |
Mon, 6 Aug 2018 19:50:50 +0100 |
159 lines |
[git/dials] master: Add axis labels to the plot (1d8efb7e)
|
DIALS commit |
Mon, 6 Aug 2018 16:32:06 +0100 |
93 lines |
[git/dials] master: Update comments (ref to numpy.histogram now irrelevant) (79210001)
|
DIALS commit |
Mon, 6 Aug 2018 16:03:34 +0100 |
112 lines |
[git/dials] master: Remove unwanted data before histogram (rather than set values to 0.0) (de194e50)
|
DIALS commit |
Mon, 6 Aug 2018 15:59:23 +0100 |
95 lines |
[git/dials] master: Add option to avoid excluding negative-valued pixels. (e2122b11)
|
DIALS commit |
Mon, 6 Aug 2018 15:13:54 +0100 |
159 lines |
[git/dials_scratch] master: Add another example to array_gotchas Reminder that setters for multidimensional arrays should not use versa, as this is not wrapped from Python. They can use const_ref though. (464f654)
|
DIALS Scratch commit |
Mon, 6 Aug 2018 12:26:19 +0100 |
404 lines |
[git/dials_scratch] master: Moved to DIALS in dials/dials@d6a3da0 (864c621)
|
DIALS Scratch commit |
Fri, 3 Aug 2018 16:00:43 +0100 |
581 lines |
[git/dials] master: Script for an Fo vs Fc plot from MTZ. Creates plots like Figure 6 from https://doi.org/10.1107/S2059798317010348. Copied here from dials_scratch to be available to users of the installer. (d6a3da06)
|
DIALS commit |
Fri, 3 Aug 2018 15:57:17 +0100 |
590 lines |
[git/dials_scratch] master: Add basic goodness-of-fit statistics (15a9c76)
|
DIALS Scratch commit |
Fri, 3 Aug 2018 15:07:34 +0100 |
169 lines |
[git/dials_scratch] master: Move linear LS curve fit examples to their own module (d513804)
|
DIALS Scratch commit |
Fri, 3 Aug 2018 14:37:09 +0100 |
244 lines |
[git/dials_scratch] master: Use NLLS (Levenberg Marquardt) for much better fit. Tidy up script. (f913059)
|
DIALS Scratch commit |
Fri, 3 Aug 2018 14:36:01 +0100 |
481 lines |
[git/dials] master: Relax requirement for a single imageset. Allow multiple imagesets, as long as beam and detector models are the same. Fixes #604 (6960ee09)
|
DIALS commit |
Fri, 3 Aug 2018 13:19:54 +0100 |
156 lines |
[git/dials_scratch] master: Complete docstring, remove explicit call to test functions (33c193a)
|
DIALS Scratch commit |
Thu, 2 Aug 2018 16:27:04 +0100 |
106 lines |
[git/dials_scratch] master: Fit hyperbola via change of variables, improve plot (6b0838c)
|
DIALS Scratch commit |
Thu, 2 Aug 2018 16:09:51 +0100 |
493 lines |
[git/dials_scratch] master: Script for an Fo vs Fc plot from MTZ (2470dea)
|
DIALS Scratch commit |
Wed, 1 Aug 2018 16:34:34 +0100 |
381 lines |
[git/dials] master: Finished text, seems to build, so add to index (6434aa41)
|
DIALS commit |
Wed, 1 Aug 2018 12:10:15 +0100 |
82 lines |
[git/dials] master: Improved text (3dba0ff6)
|
DIALS commit |
Wed, 1 Aug 2018 12:04:23 +0100 |
1122 lines |
[git/dials] master: Fix various documentation build errors (69783e44)
|
DIALS commit |
Wed, 1 Aug 2018 10:01:17 +0100 |
843 lines |
