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[git/dials] master: Add check for bad phil files (bbfc6826)
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Thu, 28 Jun 2018 15:17:31 -0700 |
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[git/dials_scratch] master: Do a few things more flexily (e0878a4)
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Wed, 27 Jun 2018 16:25:58 +0100 |
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[git/dials_scratch] master: Bugfix (15a8968)
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Tue, 26 Jun 2018 13:35:03 -0700 |
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[git/dials] master: Exclude highest deviation reflections for error model refinement. (426fe046)
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Tue, 26 Jun 2018 16:00:38 +0100 |
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[git/dials_scratch] master: Tidier implementation of plots (37b63ef)
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Tue, 26 Jun 2018 13:29:26 +0100 |
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[git/dials_scratch] master: Tweaks from the I19 working group (80b056c)
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Tue, 26 Jun 2018 13:29:26 +0100 |
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[git/dials_scratch] master: A minor change in DataDist.__init__ (ea1c08d)
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Tue, 26 Jun 2018 13:29:26 +0100 |
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[git/dials_scratch] master: Update cross validation to use and report R-factors. (e30715d)
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Tue, 26 Jun 2018 11:13:28 +0100 |
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[git/dials] master: Include R-factor calculation during scaling minimisation. (a0f4b5e8)
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Tue, 26 Jun 2018 11:10:22 +0100 |
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[git/dials] master: enable (limited) support for multi-panel detectors (closes #575) (e5237575)
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Tue, 26 Jun 2018 10:46:12 +0100 |
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[git/dials] master: Remove disused test (6a754734)
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Mon, 25 Jun 2018 14:09:00 +0100 |
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[git/dials] master: split up tests (cf3a6a98)
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Mon, 25 Jun 2018 09:57:24 +0100 |
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[git/dials] master: Add test for output_file= parameter (c18fc8a2)
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Mon, 25 Jun 2018 09:49:53 +0100 |
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[git/dials] master: add padding option to export_bitmaps (3658a881)
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Mon, 25 Jun 2018 09:45:44 +0100 |
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[git/dials] master: Fix for plotting models with no parameter esds and typo fix in html (571374cd)
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Mon, 25 Jun 2018 09:27:38 +0100 |
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[git/dials] master: only consider unique d-spacings when setting up binner_d_star_cubed (fixes #583) (1518f32d)
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Fri, 22 Jun 2018 17:32:46 +0100 |
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[git/dials_scratch] master: Did another whoopsie... (585ce45)
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Fri, 22 Jun 2018 17:25:33 +0100 |
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[git/dials_scratch] master: Did a whoopsie... (23af16b)
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Fri, 22 Jun 2018 17:23:46 +0100 |
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[git/dials_scratch] master: Tidied up histogram slightly (72d290b)
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Fri, 22 Jun 2018 16:50:25 +0100 |
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[git/dials_scratch] master: Add a little reminder (0fd5a1d)
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Fri, 22 Jun 2018 16:38:58 +0100 |
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[git/dials_scratch] master: Yet more tidying (d02dd24)
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Fri, 22 Jun 2018 16:36:46 +0100 |
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[git/dials_scratch] master: More tidying (7a99321)
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Fri, 22 Jun 2018 16:29:44 +0100 |
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[git/dials_scratch] master: More tidying (2ea75e7)
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Fri, 22 Jun 2018 16:28:03 +0100 |
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[git/dials_scratch] master: Fixed bugs (flexily?) (81736ba)
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Fri, 22 Jun 2018 16:17:17 +0100 |
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[git/dials_scratch] master: Better flexifying (e57629e)
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Fri, 22 Jun 2018 15:32:57 +0100 |
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[git/dials] master: explicitly pass args to parser.parse_args (9da46fc8)
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Fri, 22 Jun 2018 15:04:07 +0100 |
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[git/dials] master: Add output_file parameter to dials.export_bitmaps (d7cb5391)
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Fri, 22 Jun 2018 13:46:20 +0100 |
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[git/dials] master: Change working (but unrun) test into pytest (592ca944)
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Fri, 22 Jun 2018 13:21:01 +0100 |
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[git/dials_scratch] master: Fix location of generated images (af6c2ea)
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Fri, 22 Jun 2018 13:18:05 +0100 |
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[git/dials] master: Modify testing of existence of scaling models to pass idials test. (02136051)
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Fri, 22 Jun 2018 12:11:57 +0100 |
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[git/dials] master: dict.update(key:value) -> dict[key]=value (50c353c8)
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Fri, 22 Jun 2018 11:28:13 +0100 |
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[git/dials] master: Including scaling output in dials.report (9c027d4f)
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Fri, 22 Jun 2018 11:20:14 +0100 |
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[git/dials] master: return output files from imageset_as_bitmaps() (4f118b69)
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Fri, 22 Jun 2018 09:43:30 +0100 |
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[git/dials_scratch] master: Fix Imean calculation; clean clutter (b496ded)
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Thu, 21 Jun 2018 19:43:27 +0100 |
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[git/dials_scratch] master: Remove unused clutter (a47b99e)
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Thu, 21 Jun 2018 19:43:03 +0100 |
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[git/dials_scratch] master: Tidying the time series plot slightly (0df3f8c)
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Thu, 21 Jun 2018 16:59:24 +0100 |
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[git/dials_scratch] master: Fixed the time series plot (045bbb2)
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Thu, 21 Jun 2018 16:40:51 +0100 |
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[git/dials_scratch] master: Added a (dodgy) time-series plot (a96d8d5)
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Thu, 21 Jun 2018 16:29:30 +0100 |
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[git/dials_scratch] master: Moved intensity_explorer.py to command_line/ (d800dc2)
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Thu, 21 Jun 2018 16:11:37 +0100 |
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[git/dials_scratch] master: Oops, I keep thinking I'm using hg (f16ddd9)
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Thu, 21 Jun 2018 16:10:31 +0100 |
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[git/dials_scratch] master: Forgot to rename (1422352)
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Thu, 21 Jun 2018 15:55:18 +0100 |
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[git/dials_scratch] master: A tool for looking at intensity distributions (7af1e81)
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Thu, 21 Jun 2018 15:54:40 +0100 |
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[git/dials] master: less verbose output for normalisation (3080c1aa)
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Thu, 21 Jun 2018 10:50:10 +0100 |
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[git/dials] master: Improve options for handling partials during scaling. (ced94683)
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Thu, 21 Jun 2018 09:49:24 +0100 |
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[git/dials] master: good job we have tests to catch bugs in the tests (a6c16163)
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Wed, 20 Jun 2018 17:45:18 +0100 |
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[git/dials] master: resolutionizer: allow batches=None (e3418d1f)
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Wed, 20 Jun 2018 17:13:48 +0100 |
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[git/dials] master: dials.symmetry: if multiple datasets, perform normalisation on each dataset independently (52749af3)
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Wed, 20 Jun 2018 17:09:17 +0100 |
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[git/dials] master: Fixed error in targeted outlier rejection. Add tests for same. (fd533331)
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Wed, 20 Jun 2018 15:48:09 +0100 |
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[git/dials] master: Add in new outlier rejection for targeted scaling case. (255f6df3)
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Wed, 20 Jun 2018 15:00:21 +0100 |
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[git/dials] master: set upper limit on number of bins for sigma(CC) estimation (b9fa51c1)
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Wed, 20 Jun 2018 14:49:10 +0100 |
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[git/dials] master: Added default format (63d014af)
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Wed, 20 Jun 2018 13:21:50 +0100 |
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[git/dials] master: Added output for s2 column (8bfc24ec)
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Wed, 20 Jun 2018 13:11:53 +0100 |
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[git/dials] master: Bugfix to correct output reflection columns if scaling with target. (81061f22)
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Wed, 20 Jun 2018 12:30:38 +0100 |
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[git/dials] master: ensure cb_op_to_primitive is taken into account when reindexing input data files (#574) (1d8fe335)
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Wed, 20 Jun 2018 12:20:32 +0100 |
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[git/dials] master: Make comparison on space_grpoup number rather than space_group, to help with #574 (b77f4dae)
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Wed, 20 Jun 2018 12:00:34 +0100 |
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[git/dials] master: A few changes to fix bugs associated with scaling stills data. (8f054638)
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Wed, 20 Jun 2018 10:48:53 +0100 |
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[git/dials_scratch] master: Updates on intensity errors (c3aee14)
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Wed, 20 Jun 2018 10:24:43 +0100 |
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[git/dials_scratch] master: Tidying up (b40ee15)
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Wed, 20 Jun 2018 10:24:43 +0100 |
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[git/dials_scratch] master: Bringing the error explorer notebook up to speed (4f1cbe7)
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Wed, 20 Jun 2018 10:24:43 +0100 |
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[git/dials_scratch] master: Added resolution column to potato output (24ba754)
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Wed, 20 Jun 2018 10:20:23 +0100 |
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[git/dials] master: Allow setting of min_partiality cutoff for scaling. (ffbe0554)
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Wed, 20 Jun 2018 09:45:27 +0100 |
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[git/dials_scratch] master: Changed id from size_t to int (9de6336)
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Wed, 20 Jun 2018 09:22:42 +0100 |
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[git/dials] master: Add helpful logging message if space groups are determined to be different. (f997fd4b)
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Wed, 20 Jun 2018 08:52:28 +0100 |
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[git/dials] master: Add target_mtz= option to allow targeted scaling against merged mtz. (2413e1f1)
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Tue, 19 Jun 2018 17:31:58 +0100 |
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[git/dials] master: Added lp correction for stills (e24d25d2)
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Tue, 19 Jun 2018 16:56:46 +0100 |
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[git/dials_scratch] master: Added lp correction (1d57089)
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Tue, 19 Jun 2018 16:56:25 +0100 |
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[git/dials] master: bug fix (6e888708)
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Tue, 19 Jun 2018 16:38:51 +0100 |
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[git/dials] master: the sequel is never as good (90582434)
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Tue, 19 Jun 2018 16:05:47 +0100 |
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[git/dials] master: missed off previous commit (3a8dab64)
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Tue, 19 Jun 2018 15:32:06 +0100 |
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[git/dials] master: set random seed (chosen by fair dice roll) (aba20499)
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Tue, 19 Jun 2018 15:14:09 +0100 |
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[git/dials] master: add missing [ (04e18159)
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Tue, 19 Jun 2018 14:24:14 +0100 |
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[git/dials] master: Separate out prescaling correction and choice of integrated intensities. (6ea53e72)
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Tue, 19 Jun 2018 11:22:30 +0100 |
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[git/dials] master: Tidying of scaling model creation/updating. (8a2e3c0e)
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Tue, 19 Jun 2018 11:22:30 +0100 |
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[git/dials] master: fix deprecation warning (7882242d)
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Tue, 19 Jun 2018 09:07:08 +0100 |
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[git/dials] master: Stills significance filter tweaks (29f0d2e3)
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Mon, 18 Jun 2018 09:59:16 -0700 |
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[git/dials] master: bug fix for dials.export_bitmaps with still images; add test (fixes #572) (9da251dc)
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Mon, 18 Jun 2018 17:50:03 +0100 |
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[git/dials] master: dials.symmetry: optionally switch off unit cell tolerance checks by setting to None (0ced710c)
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Mon, 18 Jun 2018 13:58:40 +0100 |
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[git/dials] master: Allow dials.rs_mapper to read experiments.json, not just datablock.json. This way a map can be created that matches the spot positions in refined.pickle. (9e250788)
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Sun, 17 Jun 2018 21:08:21 +0100 |
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[git/dials] master: increase travis cache timeout (874090f8)
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Fri, 15 Jun 2018 18:10:22 +0100 |
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[git/dials] master: enable slow tests on travis (01034323)
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Fri, 15 Jun 2018 17:11:15 +0100 |
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[git/dials] master: Add more tests for scaling_library, update existing tests. (b4a24a2b)
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Fri, 15 Jun 2018 12:26:32 +0100 |
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[git/dials] master: extract imageset_as_bitmaps code to separate function (e4e5e2c7)
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Fri, 15 Jun 2018 11:28:01 +0100 |
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[git/dials] master: Create string representation of object in __str__ (76aac0cd)
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Fri, 15 Jun 2018 09:45:26 +0100 |
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[git/dials] master: Remove old warning (5bba3fe1)
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Thu, 14 Jun 2018 16:28:28 -0700 |
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[git/dials] master: Adding more tests for scaling. (20b63e18)
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Thu, 14 Jun 2018 16:10:39 +0100 |
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[git/dials] master: Left off cbf18321, do need to change the title too (0b715ae7)
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Thu, 14 Jun 2018 14:55:48 +0100 |
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[git/dials] master: Fix bug in multi-dataset outlier rejection, update tests. (e6d70150)
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Thu, 14 Jun 2018 13:37:08 +0100 |
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[git/dials_scratch] master: A notebook for error modelling (4d99d99)
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Thu, 14 Jun 2018 12:26:16 +0100 |
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[git/dials_scratch] master: Small changes (4b64837)
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Thu, 14 Jun 2018 12:26:16 +0100 |
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[git/dials_scratch] master: Updated likelihood function (8ed90c4)
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Wed, 13 Jun 2018 15:29:52 +0100 |
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[git/dials_scratch] master: Added angular mosaicity parameterisation (de60de4)
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Wed, 13 Jun 2018 15:29:52 +0100 |
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[git/dials_scratch] master: Modifiy derivatives (20dfe95)
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Wed, 13 Jun 2018 15:29:52 +0100 |
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[git/dials_scratch] master: Added output (1007507)
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Wed, 13 Jun 2018 15:29:52 +0100 |
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[git/dials] master: If we say we're going to ignore certain plots, actually ignore them (46cc83ce)
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Wed, 13 Jun 2018 11:38:29 +0100 |
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[git/dials] master: This is not a sequel (cbf18321)
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Tue, 12 Jun 2018 14:03:40 +0100 |
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[git/dials] master: Reorganise parsing and logging to a cleaner layout. (2ba6223f)
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Mon, 11 Jun 2018 14:12:23 +0100 |
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[git/dials_scratch] master: Log diff phil. (edf6f54)
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Mon, 11 Jun 2018 14:11:18 +0100 |
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[git/dials] master: Add option to specify a group offset when selecting a free set. (3890248a)
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Mon, 11 Jun 2018 12:30:49 +0100 |
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[git/dials] master: Only configure log if script not run by external process. (ceb79c62)
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Mon, 11 Jun 2018 12:30:49 +0100 |
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[git/dials_scratch] master: Add ability to do k-fold cross-validation. (b7f0ac4)
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Mon, 11 Jun 2018 12:19:44 +0100 |
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[git/dials] master: removing commented and no longer needed prints to console (9a35235b)
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Mon, 11 Jun 2018 12:08:31 +0100 |
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[git/dials_scratch] master: Add option to vary a parameter instead, specifying parameter values. (096e8b7)
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Fri, 8 Jun 2018 15:29:28 +0100 |
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[git/dials] master: dials.refine intercepts scan_varying=Auto option and will in that case do two macrocycles of refinement, first static, then scan-varying. (fc02dea0)
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Fri, 8 Jun 2018 14:20:08 +0100 |
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[git/dials] master: Rename phil parameters to be consistent with other dials programs. (f7f1fba5)
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Fri, 8 Jun 2018 13:50:06 +0100 |
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[git/dials] master: fix typo (e4c4ccd5)
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Fri, 8 Jun 2018 12:09:42 +0100 |
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[git/dials] master: more debug logging for setting up restraints (cee43637)
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Fri, 8 Jun 2018 12:09:42 +0100 |
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[git/dials_scratch] master: WIP script to do multiple scaling runs with various model options. (1b34d82)
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Fri, 8 Jun 2018 11:44:58 +0100 |
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[git/dials] master: Modify scale.py to allow running from external command line script. (c5e8a7b2)
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Fri, 8 Jun 2018 11:43:03 +0100 |
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[git/dials] master: Update storing of rmsds when using a free set. (846901f9)
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Fri, 8 Jun 2018 11:43:03 +0100 |
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[git/dials] master: change default cc_half cutoff to 0.3 (was 0.5) (13bd90d0)
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Fri, 8 Jun 2018 11:35:10 +0100 |
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[git/dials] master: Revert "fable is not a DIALS reference" (b2f65feb)
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Thu, 7 Jun 2018 18:42:59 +0100 |
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[git/dials] master: set default cc_half_fit=tanh (7fab8fdb)
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Thu, 7 Jun 2018 17:02:49 +0100 |
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[git/dials_scratch] master: Jiffy to compute Z scores for individual reflections compared with imean (fc0d35a)
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Thu, 7 Jun 2018 15:40:23 +0100 |
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[git/dials_scratch] master: Need to set matplotlib use agg (88e8e42)
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Thu, 7 Jun 2018 15:08:24 +0100 |
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[git/dials] master: Missed one from acda9dc27 (c141342b)
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Thu, 7 Jun 2018 14:17:19 +0100 |
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[git/dials] master: Attempt to render Angstrom symbol. See https://github.com/mathjax/MathJax/issues/795 (acda9dc2)
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Thu, 7 Jun 2018 14:14:45 +0100 |
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[git/dials_scratch] master: Very minor change to my error_explorer.py. (daca13d)
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Thu, 7 Jun 2018 13:35:30 +0100 |
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[git/dials_scratch] master: Merge branch 'master' of github.com:dials/dials_scratch (3b1313c)
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Thu, 7 Jun 2018 13:34:09 +0100 |
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[git/dials] master: Remove print statement that was accidentally left in. (a2eddfbf)
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Thu, 7 Jun 2018 11:55:32 +0100 |
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[git/dials] master: fable is not a DIALS reference (080e4512)
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Thu, 7 Jun 2018 11:46:33 +0100 |
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[git/dials_scratch] master: correct usage instructions (fc2bb76)
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Thu, 7 Jun 2018 11:31:42 +0100 |
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[git/dials_scratch] master: Add a test (93bb126)
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Thu, 7 Jun 2018 11:29:37 +0100 |
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[git/dials] master: Updating target function tests. (2ebbe5be)
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Thu, 7 Jun 2018 11:18:42 +0100 |
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[git/dials] master: Add an additional combined outlier-rejection & scaling step to scale.py (b9da4d23)
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Thu, 7 Jun 2018 11:18:42 +0100 |
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[git/dials] master: Update tests for scaler. (0dd14c6a)
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Thu, 7 Jun 2018 11:18:42 +0100 |
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[git/dials_scratch] master: Belongs in command_line/ for dispatcher generation (84ae140)
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Thu, 7 Jun 2018 10:47:02 +0100 |
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[git/dials_scratch] master: Improve output and default scale to max_cell (411b142)
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Thu, 7 Jun 2018 10:46:20 +0100 |
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[git/dials_scratch] master: Script to calculate frame orientations in terms of the zone axis of the beam. Requested by Bin Wang @ MMK, Stockholm (7f23e39)
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Thu, 7 Jun 2018 09:35:01 +0100 |
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[git/dials] master: Add DIALS for ED paper to publications.rst (db399a64)
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Thu, 7 Jun 2018 09:34:44 +0100 |
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[git/dials] master: yay for try/except pattern (b21d742d)
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Wed, 6 Jun 2018 14:59:07 +0100 |
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[git/dials] master: no need for common_sets; do not assert_is_similar_symmetry (bc1a24dd)
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Wed, 6 Jun 2018 14:59:07 +0100 |
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[git/dials_scratch] master: Merge branch 'master' of github.com:dials/dials_scratch (b4c6554)
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Wed, 6 Jun 2018 14:25:03 +0100 |
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[git/dials] master: Implement splitting of a free set from the Ih_table datastructure. (7239811b)
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Tue, 5 Jun 2018 16:11:09 +0100 |
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[git/dials] master: Bug fix in applying error model - wrong weights being set. (6a46505c)
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Tue, 5 Jun 2018 14:17:43 +0100 |
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[git/dials] master: Fix naming of log files and logging of merging stats. (d2da9bf4)
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Tue, 5 Jun 2018 12:43:17 +0100 |
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[git/dials] master: debugging wrapper for context managers. May be useful if you ever need to find out what a context manager is really up to. (fb050ef3)
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Tue, 5 Jun 2018 12:41:36 +0100 |
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[git/dials] master: resolutionizer: optionally compute cc vs reference dataset (756c46d5)
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Tue, 5 Jun 2018 11:58:05 +0100 |
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[git/dials] master: modification to how binning object is created to prevent indices being left outside the bin limits due to rounding errors (28b463e3)
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Mon, 4 Jun 2018 15:20:00 +0100 |
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[git/dials] master: fixing bug in data handling for reflection viewer (16a4468b)
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Mon, 4 Jun 2018 13:36:50 +0100 |
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[git/dials] master: Change normalised intensity calculation to call miller array methods. (e780db08)
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Mon, 4 Jun 2018 11:16:50 +0100 |
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[git/dials] master: intensity_quasi_normalisations() moved to miller.array (d32390a3)
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DIALS commit |
Mon, 4 Jun 2018 10:53:01 +0100 |
171 lines |
[git/dials] master: Don't keep a copy of symmetrize_reduce_enlarge around, for cctbx/cctbx_project#196 (ff27162b)
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DIALS commit |
Mon, 4 Jun 2018 08:30:31 +0100 |
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[git/dials] master: Make from dials.util.scale_down_image import scale_down_image work (5633b069)
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DIALS commit |
Mon, 4 Jun 2018 07:32:28 +0100 |
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[git/dials] master: Test is still unstable. Adding fixed random seeds again, but this time inside the test. Print more debug info. (0850f53c)
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DIALS commit |
Sat, 2 Jun 2018 00:13:54 +0100 |
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[git/dials] master: make test parameters human readable (9bf24c89)
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DIALS commit |
Fri, 1 Jun 2018 23:31:42 +0100 |
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[git/dials] master: Add check to stop possibility of ZeroDivisonError in E2 calculation. (732f164d)
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DIALS commit |
Fri, 1 Jun 2018 17:08:00 +0100 |
156 lines |
[git/dials] master: include dxtbx autodoc in sphinx documentation (a12a7ac7)
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DIALS commit |
Fri, 1 Jun 2018 12:38:11 +0100 |
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[git/dials] master: Cleaning up logging output for large number of datasets and tidying. (de9436d9)
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DIALS commit |
Fri, 1 Jun 2018 11:04:38 +0100 |
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[git/dials] master: Output scales used columns if outputting scaled data. (96665c05)
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DIALS commit |
Fri, 1 Jun 2018 11:04:01 +0100 |
93 lines |
[git/dials_scratch] master: Conforming slightly more to PEP 8, except that I've introduced DIALS' standard two-space indentation. (25be811)
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DIALS Scratch commit |
Fri, 1 Jun 2018 10:26:25 +0100 |
83 lines |