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August 2019

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Subject	From	Date	Size
[git/dials] master: Update Python3 test expectations (d6b2338d6)	DIALS commit	Sat, 31 Aug 2019 10:41:43 +0100	445 lines
[git/dials] master: Fix nave parameter multi lattice bug (#888) (07f99c3e7)	DIALS commit	Fri, 30 Aug 2019 12:46:46 -0700	1287 lines
[git/dials] master: remove blosc support (0a5bcc21e)	DIALS commit	Fri, 30 Aug 2019 17:03:59 +0100	212 lines
[git/dials_data] master: New image_examples dataset (#96) (a35c809)	dials-data commit	Fri, 30 Aug 2019 15:57:20 +0100	118 lines
[git/dials_data] master: Update dataset centroid_test_data (#95) (b447fbd)	dials-data commit	Fri, 30 Aug 2019 15:38:26 +0100	123 lines
[git/dials] master: Fix C++ exception raising for Python 3 (65ebcfe3c)	DIALS commit	Fri, 30 Aug 2019 15:27:15 +0100	128 lines
[git/dials_data] master: Add further files for dxtbx tests (#94) (a3e53ad)	dials-data commit	Fri, 30 Aug 2019 15:19:40 +0100	144 lines
[git/dials] master: Now it is ❤️ (a52acc082)	DIALS commit	Fri, 30 Aug 2019 14:32:36 +0100	214 lines
[git/dials] master: Make reflection tables throw KeyErrors (eb771c66f)	DIALS commit	Fri, 30 Aug 2019 14:32:13 +0100	186 lines
[git/dials] master: Fix a newly introduced deprecation warning (2af5ee22a)	DIALS commit	Fri, 30 Aug 2019 13:47:45 +0100	316 lines
[git/dials] master: no longer any params.verbosity (closes #860) (bf3c0c68f)	DIALS commit	Fri, 30 Aug 2019 13:47:31 +0100	100 lines
[git/dials] master: Retire verbosity phil parameter (#860) (9a20974bb)	DIALS commit	Fri, 30 Aug 2019 13:23:41 +0100	150 lines
[git/dials] master: Avoid abc metaclass for py2+3 compatibility in scaling (a0c3382f9)	DIALS commit	Fri, 30 Aug 2019 13:05:43 +0100	887 lines
[git/dials] master: Retire verbosity phil parameter (#860) (a3603c63f)	DIALS commit	Fri, 30 Aug 2019 12:14:22 +0100	157 lines
[git/dials] master: Retire verbosity phil parameter (#860) (46829bb4a)	DIALS commit	Fri, 30 Aug 2019 12:08:56 +0100	625 lines
[git/dials] master: fix documentation build following file rename (6497076a2)	DIALS commit	Fri, 30 Aug 2019 12:06:48 +0100	134 lines
[git/dials] master: float import & fix command name in usage line (9a8cd20ee)	DIALS commit	Fri, 30 Aug 2019 12:06:47 +0100	171 lines
[git/dials] master: Python3: libfuturize.fixes.fix_cmp (#897) (1f29aa266)	DIALS commit	Fri, 30 Aug 2019 11:16:40 +0100	407 lines
[git/dials] master: Refactor scaling model creation to be more sensible. (2f73ea9bb)	DIALS commit	Fri, 30 Aug 2019 10:15:08 +0100	2573 lines
[git/dials] master: Remove import dependencies that are not (4a266d8df)	DIALS commit	Fri, 30 Aug 2019 09:09:44 +0100	147 lines
[git/dials] master: add missing regex-group->string conversion (acb12b9ec)	DIALS commit	Thu, 29 Aug 2019 22:24:29 +0100	120 lines
[git/dials] master: Report the pre-commit package version (5b0d5ea00)	DIALS commit	Thu, 29 Aug 2019 22:01:29 +0100	292 lines
[git/dials] master: Replace Crystal.show() with new Crystal.as_str() (#903) (4637580db)	DIALS commit	Thu, 29 Aug 2019 17:14:26 +0100	110 lines
[git/dials] master: Remove assert that is always True (c1e3ad850)	DIALS commit	Thu, 29 Aug 2019 16:24:50 +0100	87 lines
[git/dials] master: Cover libtbx_config and SConscripts with precommit black (8c773c4d4)	DIALS commit	Thu, 29 Aug 2019 15:30:37 +0100	86 lines
[git/dials] master: Minor campsite improvements (38cc3f765)	DIALS commit	Thu, 29 Aug 2019 12:49:53 +0100	266 lines
[git/dials] master: Write out .json as text file (15456e17b)	DIALS commit	Thu, 29 Aug 2019 12:40:48 +0100	402 lines
[git/dials] master: Avoid comparing None with numbers (bb3fa8f4b)	DIALS commit	Thu, 29 Aug 2019 12:33:20 +0100	108 lines
[git/dials] master: Jinja does not like range() objects (40e7dd035)	DIALS commit	Thu, 29 Aug 2019 12:12:16 +0100	214 lines
[git/dials] master: Don't .iter those items() (ea262a1e6)	DIALS commit	Thu, 29 Aug 2019 12:12:12 +0100	163 lines
[git/dials] master: Convert reflection tables to messagepack as bytes (3bf747040)	DIALS commit	Thu, 29 Aug 2019 12:05:12 +0100	119 lines
[git/dials] master: use six to get cStringIO (9b42839e2)	DIALS commit	Thu, 29 Aug 2019 11:59:18 +0100	244 lines
[git/dials] master: Fix test for Python 3 (d91a0102b)	DIALS commit	Thu, 29 Aug 2019 11:38:45 +0100	221 lines
[git/dials] master: Avoid comparing None with integer (7dc8aad6f)	DIALS commit	Thu, 29 Aug 2019 11:19:17 +0100	260 lines
[git/dials] master: Update test for python3 compatibility (225c433e9)	DIALS commit	Thu, 29 Aug 2019 11:02:35 +0100	499 lines
[git/dials] master: Update tests (f205dbd6a)	DIALS commit	Thu, 29 Aug 2019 10:06:46 +0100	505 lines
[git/dials] master: disable libtbx testing for DIALS (db6eea47c)	DIALS commit	Thu, 29 Aug 2019 09:15:40 +0100	121 lines
[git/dials] master: Don't compare Auto with integers (f24c9c20e)	DIALS commit	Thu, 29 Aug 2019 09:11:09 +0100	129 lines
[git/dials] master: replace boost injector with py3-compatible version (2ddc9340b)	DIALS commit	Thu, 29 Aug 2019 08:27:02 +0100	158 lines
[git/dials] master: Move check for too-large mosaic volume to the nave parameters function. (4cc029109)	DIALS commit	Wed, 28 Aug 2019 17:19:40 -0700	194 lines
[git/dials] master: adding an option to set mosaic half degree and domain size values when using stills_indexer (c8eecac8a)	DIALS commit	Wed, 28 Aug 2019 12:17:46 -0700	175 lines
[git/dials] master: Revert "Recify use of 'is_scaled' scaling model attribute." (caef20663)	DIALS commit	Wed, 28 Aug 2019 14:05:15 +0100	409 lines
[git/dials] master: Don't split scaling output experiments. (de3dbde27)	DIALS commit	Wed, 28 Aug 2019 13:31:08 +0100	97 lines
[git/dials] master: Avoid some crashes on five_number_summary in dials.symmetry. (c73d42638)	DIALS commit	Wed, 28 Aug 2019 11:05:24 +0100	139 lines
[git/dials] master: Make temporary change permanent (d360fa4f5)	DIALS commit	Wed, 28 Aug 2019 08:59:41 +0100	135 lines
[git/dials] master: Minor python3 fixups (17f531a27)	DIALS commit	Tue, 27 Aug 2019 22:35:31 +0100	210 lines
[git/dials] master: Index basis vector strategy refactor (#895) (c34031a62)	DIALS commit	Tue, 27 Aug 2019 16:13:00 +0100	150 lines
[git/dials] master: Survive blosc extension errors on RHEL6 (68dbd1f2c)	DIALS commit	Tue, 27 Aug 2019 15:47:18 +0100	140 lines
[git/dials] master: Add a newsfragment for the dials.report fix 896 (9586378e6)	DIALS commit	Tue, 27 Aug 2019 11:20:01 +0100	80 lines
[git/dials] master: Reformat cosym synthetic test to run through command line (85e157bb1)	DIALS commit	Tue, 27 Aug 2019 10:25:06 +0100	308 lines
[git/dials] master: Remove deprecated FPE environment variables (518f22f65)	DIALS commit	Tue, 27 Aug 2019 08:42:01 +0100	511 lines
[git/dials] master: fix a few cosym tests for python 3 (ad73ca600)	DIALS commit	Tue, 27 Aug 2019 08:25:00 +0100	404 lines
[git/dials] master: fix test for python 3 (1cf43b065)	DIALS commit	Tue, 27 Aug 2019 07:57:46 +0100	91 lines
[git/dials] master: Fix dials.report reporting of oscillation width (2b07670a9)	DIALS commit	Fri, 23 Aug 2019 17:24:48 +0100	103 lines
[git/dials] master: Merge branch 'remove_halraiser' (31da532cf)	DIALS commit	Fri, 23 Aug 2019 16:18:30 +0100	59 lines
[git/dials] master: Deprecation warnings (#885) (6b059723c)	DIALS commit	Fri, 23 Aug 2019 16:02:03 +0100	227 lines
[git/dials] master: Resolve tautology in file name (abb763478)	DIALS commit	Fri, 23 Aug 2019 15:02:59 +0100	669 lines
[git/dials] master: Remove `.show` method of `Crystal` (cddaab5ca)	DIALS commit	Fri, 23 Aug 2019 14:57:27 +0100	102 lines
[git/dials] master: Tidy up example (060711da0)	DIALS commit	Fri, 23 Aug 2019 14:47:23 +0100	234 lines
[git/dials] master: further code cleanup (1f7d69925)	DIALS commit	Fri, 23 Aug 2019 14:47:23 +0100	619 lines
[git/dials] master: Placate flake8 (a43fe0578)	DIALS commit	Fri, 23 Aug 2019 14:47:22 +0100	454 lines
[git/dials] master: Resolve deprecation warnings (cc4ba1bd9)	DIALS commit	Fri, 23 Aug 2019 14:47:22 +0100	1161 lines
[git/dials] master: Plac8 flake8 (35ae8ceb1)	DIALS commit	Fri, 23 Aug 2019 14:45:40 +0100	411 lines
[git/dials] master: Resolve `halraiser` deprecation warnings (94431da67)	DIALS commit	Fri, 23 Aug 2019 14:45:39 +0100	1123 lines
[git/dials] master: Add scaling test to cover recently fixed targeted scaling bug (e4ba079e7)	DIALS commit	Fri, 23 Aug 2019 10:19:05 +0100	140 lines
[git/dials] master: Recify use of 'is_scaled' scaling model attribute. (17406403a)	DIALS commit	Thu, 22 Aug 2019 15:55:47 +0100	373 lines
[git/dials] master: Fix error in variance extraction for targeted scaling with mtz (b9251dc10)	DIALS commit	Thu, 22 Aug 2019 14:37:52 +0100	193 lines
[git/dials_data] master: Merge pull request #89 from dials/dependabot/pip/pip-19.2.2 (d24306c)	dials-data commit	Thu, 22 Aug 2019 14:31:42 +0100	68 lines
[git/dials_data] master: Check data repository is writable (#92) (fb1dd02)	dials-data commit	Thu, 22 Aug 2019 14:30:40 +0100	129 lines
[git/dials] master: update expected Python3 test failures (e8d0dab71)	DIALS commit	Thu, 22 Aug 2019 12:16:45 +0100	668 lines
[git/dials_data] master: Bump pip from 19.1.1 to 19.2.2 (3df2898)	dials-data commit	Thu, 22 Aug 2019 10:45:56 +0000	97 lines
[git/dials_data] master: Update dataset centroid_test_data (#91) (6d66193)	dials-data commit	Thu, 22 Aug 2019 11:40:04 +0100	115 lines
[git/dials_data] master: Bump pytest from 4.5.0 to 4.6.5 (#90) (c4f526b)	dials-data commit	Thu, 22 Aug 2019 09:51:24 +0100	77 lines
[git/dials_data] master: Bump pytest from 4.5.0 to 4.6.5 (#90) (21b65f7)	dials-data commit	Thu, 22 Aug 2019 09:51:05 +0100	121 lines
[git/dials_data] master: Update centroid test data URLs (#88) (fb1f8cd)	dials-data commit	Thu, 22 Aug 2019 09:48:39 +0100	283 lines
[git/dials] master: Fix side effect of a2f9aec (fixes #892) (cd13a6467)	DIALS commit	Thu, 22 Aug 2019 09:47:30 +0100	90 lines
[git/dials_data] master: Bump pip from 19.1.1 to 19.2.1 (#77) (c971823)	dials-data commit	Thu, 22 Aug 2019 09:28:39 +0100	98 lines
[git/dials_data] master: Bump pyyaml from 5.1.1 to 5.1.2 (#78) (2ccd990)	dials-data commit	Thu, 22 Aug 2019 09:24:56 +0100	118 lines
[git/dials] master: fix refinement verbosity deprecation warnings (a2f9aec4f)	DIALS commit	Wed, 21 Aug 2019 16:11:59 +0100	393 lines
[git/dials] master: Add tests of dials.merge to expected py3 failures (e33246189)	DIALS commit	Wed, 21 Aug 2019 16:03:28 +0100	91 lines
[git/dials] master: Update to new logging ways in dials.merge, dials.space_group (aa297d1d4)	DIALS commit	Wed, 21 Aug 2019 15:43:12 +0100	178 lines
[git/dials] master: Add dials.merge and finish off post-integration workflow (#859) (f42bff5c2)	DIALS commit	Wed, 21 Aug 2019 15:16:30 +0100	2385 lines
[git/dials] master: Remove yellow pre-commit information box (21aef6de9)	DIALS commit	Wed, 21 Aug 2019 13:25:36 +0100	328 lines
[git/dials] master: Put dials.analyse_background out to grass (#889) (105cadec4)	DIALS commit	Tue, 20 Aug 2019 17:27:14 +0100	274 lines
[git/dials_scratch] master: Merge pull request #4 from dials/retire-analyse-background (db365ca)	DIALS Scratch commit	Tue, 20 Aug 2019 17:03:34 +0100	78 lines
[git/dials_scratch] master: Put dials.analyse_background out to grass (391f94b)	DIALS Scratch commit	Tue, 20 Aug 2019 16:52:41 +0100	250 lines
[git/dials] master: Low res spot match indexing (#884) (b87d96a3c)	DIALS commit	Tue, 20 Aug 2019 15:53:11 +0100	2889 lines
[git/dials] master: Speed up dials.refine_bravais_settings. (#855) (3e9b8b28a)	DIALS commit	Tue, 20 Aug 2019 14:24:17 +0100	221 lines
[git/dials] master: potential fix for Python3 test failure (b603c79b1)	DIALS commit	Tue, 20 Aug 2019 12:38:26 +0100	115 lines
[git/dials] master: Handle scaled data in two_theta_refine. (6b9fa596e)	DIALS commit	Tue, 20 Aug 2019 12:07:06 +0100	683 lines
[git/dials] master: Add a CONTRIBUTING/standard/conventions document (#838) (eb7d2b556)	DIALS commit	Tue, 20 Aug 2019 09:21:34 +0100	526 lines
[git/dials] master: Add option not to nag (e0cc4e589)	DIALS commit	Tue, 20 Aug 2019 06:49:02 +0100	142 lines
[git/dials] master: Clean clutter (b0517ec4a)	DIALS commit	Sun, 18 Aug 2019 05:11:52 +0100	122 lines
[git/dials] master: Merge pull request #883 from dials/stills_idx_norefine (75bbded5e)	DIALS commit	Fri, 16 Aug 2019 10:00:38 -0700	70 lines
[git/dials] master: ignore all forms of refinement (2d763e87b)	DIALS commit	Thu, 15 Aug 2019 17:52:07 -0700	155 lines
[git/dials] master: add LoggingContext manager (#872) (d9463c37c)	DIALS commit	Wed, 14 Aug 2019 13:25:28 +0100	864 lines
[git/dials] master: Flag for OptionParser/image_viewer to defer model loading (#802) (a0fb36a3b)	DIALS commit	Tue, 13 Aug 2019 10:36:15 +0100	318 lines
[git/dials] master: Add parameters image_tag (multiple=True) and show_image_tags=False (4ed9a7648)	DIALS commit	Mon, 12 Aug 2019 17:08:56 -0700	298 lines
[git/dials_data] master: Update dataset sacla_mpccd_phase3 (#86) (9284fe5)	dials-data commit	Mon, 12 Aug 2019 12:55:53 +0100	96 lines
[git/dials_data] master: Add SACLA MPCCDc Phase3 example courtesy of @biochem-fan (#85) (086aa34)	dials-data commit	Mon, 12 Aug 2019 11:51:52 +0100	98 lines
[git/dials] master: Attempt to fix py3 test failure. (de2116cde)	DIALS commit	Mon, 12 Aug 2019 10:05:55 +0100	87 lines
[git/dials] master: Clean clutter (4ed4ca60e)	DIALS commit	Sun, 11 Aug 2019 05:10:34 +0100	89 lines
[git/dials] master: update test_export_best after spotfinding changes (72c93eab3)	DIALS commit	Fri, 9 Aug 2019 15:15:56 +0100	298 lines
[git/dials_data] master: Add definition for 3 SMV files for Format class testing (c38de40)	dials-data commit	Fri, 9 Aug 2019 15:15:51 +0100	113 lines
[git/dials] master: Set dispersion_extended as default spot-finding algorithm (fixes #752) (736fd8f57)	DIALS commit	Fri, 9 Aug 2019 14:41:50 +0100	119 lines
[git/dials] master: fix deprecation warning (344f8bb41)	DIALS commit	Fri, 9 Aug 2019 14:05:58 +0100	106 lines
[git/dials] master: remove empty dispersion_extended phil scope (f05fd880c)	DIALS commit	Fri, 9 Aug 2019 12:13:32 +0100	244 lines
[git/dials_scratch] master: Moved to DIALS (dce84ea)	DIALS Scratch commit	Fri, 9 Aug 2019 12:09:34 +0100	674 lines
[git/dials] master: dials.plot_Fo_vs_Fc recovered from dials_scratch. (b88732232)	DIALS commit	Fri, 9 Aug 2019 12:04:24 +0100	719 lines
[git/dials_data] master: Definition for a refined MTZ from ED. (dee5688)	dials-data commit	Fri, 9 Aug 2019 11:02:12 +0100	95 lines
[git/dials] master: bug fix: minimum of 1 bin, ensure Amax > Amin (8bba2ac97)	DIALS commit	Thu, 8 Aug 2019 16:39:38 +0100	101 lines
[git/dials] master: add min_reflections option (fixes #877) (2e607e7bb)	DIALS commit	Thu, 8 Aug 2019 16:39:38 +0100	179 lines
[git/dials_data] master: Merge pull request #82 from graeme-winter/master (2daec0c)	dials-data commit	Thu, 8 Aug 2019 16:24:45 +0100	68 lines
[git/dials_data] master: Correct commit id (6e359b1)	dials-data commit	Thu, 8 Aug 2019 16:21:18 +0100	105 lines
[git/dials_data] master: Merge pull request #80 from graeme-winter/master (7c7bd2c)	dials-data commit	Thu, 8 Aug 2019 16:08:44 +0100	68 lines
[git/dials] master: Use new format reflection data for test (292622a55)	DIALS commit	Thu, 8 Aug 2019 16:05:55 +0100	89 lines
[git/dials_data] master: Add integrated.refl for tests with new fornat (8ee4bd3)	dials-data commit	Thu, 8 Aug 2019 16:04:25 +0100	102 lines
[git/dials] master: Report standard error of correlation coefficients. (#825) (e69db2ed4)	DIALS commit	Thu, 8 Aug 2019 15:26:40 +0100	340 lines
[git/dials] master: Merge pull request #783 from dials/msgpack_update_may_2019 (382d4d274)	DIALS commit	Wed, 7 Aug 2019 15:18:05 +0100	224 lines
[git/dials] master: Changed from/as_pickle to from/as_file (413df189c)	DIALS commit	Wed, 7 Aug 2019 10:24:57 +0100	344 lines
[git/dials] master: Merge branch 'master' into msgpack_update_may_2019 (6e5c86c05)	DIALS commit	Wed, 7 Aug 2019 10:22:36 +0100	66 lines
[git/dials] master: Revert "Fix nave parameter multi lattice bug (#876)" (2326062e4)	DIALS commit	Tue, 6 Aug 2019 12:06:35 -0700	1148 lines
[git/dials] master: Fix nave parameter multi lattice bug (#876) (2ba968f80)	DIALS commit	Tue, 6 Aug 2019 11:12:52 -0700	1149 lines
[git/dials] master: lgtm: show_reflections should not inherit from show_3d (58eaae629)	DIALS commit	Tue, 6 Aug 2019 11:42:49 +0100	97 lines
[git/dials] master: lgtm: fix probable copypasta error (19dd778ec)	DIALS commit	Tue, 6 Aug 2019 11:36:43 +0100	90 lines
[git/dials] master: lgtm: loop variable is unused (bed2cd5d1)	DIALS commit	Tue, 6 Aug 2019 11:32:48 +0100	103 lines
[git/dials] master: lgtm: guessing the change is what was originally intended (a660991e0)	DIALS commit	Tue, 6 Aug 2019 11:27:34 +0100	97 lines
[git/dials_scratch] master: Make dev.dials.sim_ED_stills wrapper to put script in the path (6b95e47)	DIALS Scratch commit	Mon, 5 Aug 2019 15:30:24 +0100	86 lines
[git/dials_scratch] master: Add dev.dials.indigo wrapper and benchmark script (0bcf572)	DIALS Scratch commit	Mon, 5 Aug 2019 11:30:40 +0100	451 lines
[git/dials] master: Fix lgtm signature mismatch alerts (7ed11d36b)	DIALS commit	Fri, 2 Aug 2019 15:26:11 +0100	141 lines
[git/dials] master: Add None option in scaling and filtering method choice. (a5b10c1c9)	DIALS commit	Fri, 2 Aug 2019 10:23:42 +0100	94 lines

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August 2019

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