JISCMail - DIALS-COMMIT Archives

Email discussion lists for the UK Education and Research communities

Subscriber's Corner

Email Lists

DIALS-COMMIT Archives

May 2016

View:

Show Author | Hide Author

		LISTSERV Archives
		DIALS-COMMIT Home

Options

Subscribe or Unsubscribe

Get Password

Subject	From	Date	Size
[git/dials] master: Change interface to helper functions so that parameterisation can be optionally passed in (support scan-varying case where gradients are passed in instead) (3293b43)	DIALS Commit via DLS Jenkins	Thu, 26 May 2016 11:55:11 +0100	1122 lines
[git/dials] master: further modifications to allow any model to vary (d472a01)	DIALS Commit via DLS Jenkins	Thu, 26 May 2016 11:55:11 +0100	305 lines
[git/dials] master: change _get_U_B_for_experiment to _get_model_data_for_experiment to get also s0 and D, and therefore allow these to be arrays for the scan-varying case (b079191)	DIALS Commit via DLS Jenkins	Thu, 26 May 2016 11:55:11 +0100	439 lines
[git/dials] master: Allow pass-in of precalculated derivatives to reuse these methods in the scan-varying case (7056480)	DIALS Commit via DLS Jenkins	Thu, 26 May 2016 11:55:11 +0100	336 lines
[git/dials] master: store derivatives of state in reflections only for parameterisations that are scan-varying (e8813b1)	DIALS Commit via DLS Jenkins	Thu, 26 May 2016 11:55:11 +0100	400 lines
[git/dials] master: Cleaner, functional interface for ScanStaticRayPredictor and ExperimentsPredictor (2bc2700)	DIALS Commit via DLS Jenkins	Thu, 26 May 2016 11:55:11 +0100	1177 lines
[git/dials] master: Add extra columns as needed, also hasattr for duck-typing (fda743d)	DIALS Commit via DLS Jenkins	Thu, 26 May 2016 11:55:10 +0100	222 lines
[git/dials] master: Add and use a method ModelParameterisation.is_multi_state (1ec068c)	DIALS Commit via DLS Jenkins	Thu, 26 May 2016 11:55:10 +0100	236 lines
[git/dials] master: fix duck-typing by hasattr (efece90)	DIALS Commit via DLS Jenkins	Thu, 26 May 2016 11:55:10 +0100	158 lines
[git/dials] master: Now don't need outer if blocks (800f47d)	DIALS Commit via DLS Jenkins	Thu, 26 May 2016 11:55:10 +0100	574 lines
[git/dials] master: rename classes (879d196)	DIALS Commit via DLS Jenkins	Thu, 26 May 2016 11:55:10 +0100	510 lines
[git/dials] master: Convert default Nones to empty lists to allow iteration (ac1376e)	DIALS Commit via DLS Jenkins	Thu, 26 May 2016 11:55:10 +0100	209 lines
[git/dials] master: fit reflection viewer test on lower resolution screens (549186a)	DIALS Commit via DLS Jenkins	Tue, 24 May 2016 20:24:19 +0100	75 lines
[git/dials] master: Fix download URLs (0ac86a2)	DIALS Commit via DLS Jenkins	Tue, 24 May 2016 15:37:35 +0100	116 lines
[git/dials] master: Set expert_level=2 to hide this in the automatically-generated ccp4i2 gui for xia2 (3deac99)	DIALS Commit via DLS Jenkins	Tue, 24 May 2016 12:21:02 +0100	71 lines
[git/dials] master: use bundled edge properties instead of storing in std::map -> much faster (25e3fad)	DIALS Commit via DLS Jenkins	Mon, 23 May 2016 16:23:12 +0100	424 lines
[git/dials] master: Increment stable version number (011ddae)	DIALS Commit via DLS Jenkins	Mon, 23 May 2016 14:02:36 +0100	130 lines
[git/dials] master: When determining version numbers on release branches always treat merges as single commits (012e027)	DIALS Commit via DLS Jenkins	Mon, 23 May 2016 14:01:40 +0100	107 lines
[git/dials] master: Fix for compatibility with Pillow >= 3.0.0 (see http://pillow.readthedocs.io/en/3.1.x/releasenotes/3.0.0.html) (e584ac9)	DIALS Commit via DLS Jenkins	Mon, 23 May 2016 10:54:38 +0100	90 lines
[git/dials] master: javascript definitions for compatibility with ccp4i2's QtWebKit browser (6281c52)	DIALS Commit via DLS Jenkins	Fri, 20 May 2016 14:39:34 +0100	159 lines
[git/dials] master: Avoid loading libtbx environment (3bd0f8f)	DIALS Commit via DLS Jenkins	Fri, 20 May 2016 10:34:07 +0100	78 lines
[git/dials] master: Added back \ to make code work (6687772)	DIALS Commit via DLS Jenkins	Thu, 19 May 2016 12:38:22 +0100	130 lines
[git/dials] master: Further code cleanup. (42647c3)	DIALS Commit via DLS Jenkins	Thu, 19 May 2016 11:24:54 +0100	1644 lines
[git/dials] master: fix for zero-width scans being treated as stills (bde9a29)	DIALS Commit via DLS Jenkins	Wed, 18 May 2016 22:56:20 +0100	78 lines
[git/dials] master: resolve naming conflict with python built-in function (401fc91)	DIALS Commit via DLS Jenkins	Wed, 18 May 2016 08:58:45 +0100	100 lines
[git/dials] master: fixing after the parentheses elimination, which did not consider parentheses to join multiple line IF statements (d7ebd46)	DIALS Commit via DLS Jenkins	Tue, 17 May 2016 13:50:41 +0100	88 lines
[git/dials] master: Avoid mutable default arguments (c0db2d0)	DIALS Commit via DLS Jenkins	Tue, 17 May 2016 11:14:36 +0100	603 lines
[git/dials] master: has_key() is deprecated. (35a3028)	DIALS Commit via DLS Jenkins	Tue, 17 May 2016 10:40:28 +0100	828 lines
[git/dials] master: Comments, cleanup and object orientation fixes. (5dd03b9)	DIALS Commit via DLS Jenkins	Tue, 17 May 2016 09:52:50 +0100	793 lines
[git/dials] master: source formatting cleanup, closes #141 (accc1a3)	DIALS Commit via DLS Jenkins	Tue, 17 May 2016 09:10:52 +0100	251 lines
[git/dials] master: Use generator expression with any/all (e34173f)	DIALS Commit via DLS Jenkins	Mon, 16 May 2016 16:24:21 +0100	226 lines
[git/dials] master: add README.md for github project site (e03a0c0)	DIALS Commit via DLS Jenkins	Mon, 16 May 2016 16:09:55 +0100	121 lines
[git/dials] master: further cleanup. Assigning lambdas to variables duplicates 'def' (3abd120)	DIALS Commit via DLS Jenkins	Mon, 16 May 2016 16:04:06 +0100	163 lines
[git/dials] master: Use dict comprehension instead of dict([...]) (1c6a9c1)	DIALS Commit via DLS Jenkins	Mon, 16 May 2016 15:53:43 +0100	173 lines
[git/dials] master: use is/is not for comparing with None (f4fdb93)	DIALS Commit via DLS Jenkins	Mon, 16 May 2016 15:48:03 +0100	458 lines
[git/dials] master: remove dead code (b6cb6da)	DIALS Commit via DLS Jenkins	Mon, 16 May 2016 15:42:57 +0100	103 lines
[git/dials] master: remove redundant imports (cf6c581)	DIALS Commit via DLS Jenkins	Mon, 16 May 2016 15:36:46 +0100	160 lines
[git/dials] master: Update download links (0076634)	DIALS Commit via DLS Jenkins	Mon, 16 May 2016 14:31:48 +0100	130 lines
[git/dials] master: fixing comments (b45670e)	DIALS Commit via DLS Jenkins	Sun, 15 May 2016 12:48:32 +0100	96 lines
[git/dials_scratch] master: Improvements for asb/duelling_profiles.py (b6d90b1)	DIALS Scratch Commit via DLS Jenkins	Fri, 13 May 2016 13:13:31 -0700	345 lines
[git/dials] master: updating a date in comment (e745cf1)	DIALS Commit via DLS Jenkins	Fri, 13 May 2016 17:44:33 +0100	70 lines
[git/dials] master: Reduce execution times by using a queueing mechanism for thread-notification rather than continuously polling status. (9a7ef3c)	DIALS Commit via DLS Jenkins	Fri, 13 May 2016 15:03:10 +0100	475 lines
[git/dials] master: Fixed a couple of help string errors (6a73a53)	DIALS Commit via DLS Jenkins	Fri, 13 May 2016 15:00:16 +0100	126 lines
[git/dials] master: 1b fix closes #139 (c81e393)	DIALS Commit via DLS Jenkins	Thu, 12 May 2016 15:55:18 +0100	76 lines
[git/dials_scratch] master: Update defaults to what we think are the best models. (c77e332)	DIALS Scratch Commit via DLS Jenkins	Wed, 11 May 2016 11:27:43 -0700	262 lines
[git/dials_scratch] master: Bugfix for getting a randomly oriented vector using flex.random_double_r3_rotation_matrix_arvo_1992 and unit quaternions. (37d56b9)	DIALS Scratch Commit via DLS Jenkins	Wed, 11 May 2016 10:51:13 -0700	157 lines
[git/dials_scratch] master: Updates for asb/duelling_profile (34717d3)	DIALS Scratch Commit via DLS Jenkins	Wed, 11 May 2016 09:52:08 -0700	299 lines
[git/dials] master: improving test for flex array viewer (025c0d3)	DIALS Commit via DLS Jenkins	Wed, 11 May 2016 17:00:14 +0100	188 lines
[git/dials] master: Set the number of cores in the qsub command (1620ad7)	DIALS Commit via DLS Jenkins	Wed, 11 May 2016 16:50:47 +0100	151 lines
[git/dials] master: bug squashing (b669a91)	DIALS Commit via DLS Jenkins	Wed, 11 May 2016 16:37:13 +0100	91 lines
[git/dials] master: renaming according to non use of matplotlib (c55ef4b)	DIALS Commit via DLS Jenkins	Wed, 11 May 2016 15:58:51 +0100	104 lines
[git/dials] master: Added grid size parameter to import (927345b)	DIALS Commit via DLS Jenkins	Wed, 11 May 2016 15:56:56 +0100	110 lines
[git/dials] master: Added multi processing on cluster with multiple cores. (3328e91)	DIALS Commit via DLS Jenkins	Wed, 11 May 2016 15:56:56 +0100	1116 lines
[git/dials] master: removing old use of matplotlib (a6795e4)	DIALS Commit via DLS Jenkins	Wed, 11 May 2016 15:48:59 +0100	472 lines
[git/dials] master: fix image number output (ff867e3)	DIALS Commit via DLS Jenkins	Wed, 11 May 2016 15:13:52 +0100	116 lines
[git/dials] master: fixing format in flex array viewer (2ba46fe)	DIALS Commit via DLS Jenkins	Wed, 11 May 2016 14:43:51 +0100	271 lines
[git/dials] master: dev.dials.import_xds -> dials.import_xds (so it can be used by xia2) (e96687d)	DIALS Commit via DLS Jenkins	Wed, 11 May 2016 14:15:46 +0100	184 lines
[git/dials] master: fixing test in flex array viewer (5cce0ba)	DIALS Commit via DLS Jenkins	Wed, 11 May 2016 10:43:24 +0100	74 lines
[git/dials_scratch] master: Better aspect ratio fix for mm plot (a623a53)	DIALS Scratch Commit via DLS Jenkins	Tue, 10 May 2016 15:58:35 -0700	145 lines
[git/dials_scratch] master: asb/duelling_profiles.py: plotting fix and add RMSDs and 'xyzsim.mm' (765807b)	DIALS Scratch Commit via DLS Jenkins	Tue, 10 May 2016 13:51:49 -0700	281 lines
[git/dials] master: adding more information regarding sliced array in reflection viewer (b351cae)	DIALS Commit via DLS Jenkins	Tue, 10 May 2016 17:06:36 +0100	177 lines
[git/dials_scratch] master: Add parameters plots and nrays. (82b4918)	DIALS Scratch Commit via DLS Jenkins	Tue, 10 May 2016 07:47:28 -0700	150 lines
[git/dials] master: fix for image numbers (7fd53e6)	DIALS Commit via DLS Jenkins	Tue, 10 May 2016 14:18:14 +0100	134 lines
[git/dials] master: removing no longer needed log print to console (7420962)	DIALS Commit via DLS Jenkins	Tue, 10 May 2016 10:45:24 +0100	488 lines
[git/dials] master: Output correct #images if image_range set; avoid confusion; fixes #137 (7152c48)	DIALS Commit via DLS Jenkins	Tue, 10 May 2016 08:59:50 +0100	103 lines
[git/dials_scratch] master: Bugfix (592c332)	DIALS Scratch Commit via DLS Jenkins	Mon, 9 May 2016 16:58:58 -0700	73 lines
[git/dials_scratch] master: Add parameter sigma_m_rotates_relp (default = True, maintaining original behavior) (45e98f0)	DIALS Scratch Commit via DLS Jenkins	Mon, 9 May 2016 16:39:22 -0700	171 lines
[git/dials_scratch] master: For illuminated_crystal_volume.shape=sphere, when picking a random point in the sphere, use flex.random_double_r3_rotation_matrix_arvo_1992 to get an axis from a uniformly distributed set of rotation matrices. (8a0f5b9)	DIALS Scratch Commit via DLS Jenkins	Mon, 9 May 2016 16:14:21 -0700	140 lines
[git/dials_scratch] master: More parameters for asb/duelling_profiles.py, including illuminated_crystal_volume.rectangular_parallelepiped (4f61e94)	DIALS Scratch Commit via DLS Jenkins	Mon, 9 May 2016 15:19:11 -0700	265 lines
[git/dials_scratch] master: Reorganize phil parameters for asb/duelling_profiles.py (26ac0d0)	DIALS Scratch Commit via DLS Jenkins	Mon, 9 May 2016 14:38:03 -0700	374 lines
[git/dials] master: Distribute iota and prime. (473133f)	DIALS Commit via DLS Jenkins	Mon, 9 May 2016 10:03:53 -0700	89 lines
[git/dials] master: bug fix if blank region at end of scan; correct image numbers in output (d91516c)	DIALS Commit via DLS Jenkins	Mon, 9 May 2016 16:18:32 +0100	185 lines
[git/dials] master: get phi_min, phi_max from scan, not from reflections phi values (92f9d5f)	DIALS Commit via DLS Jenkins	Mon, 9 May 2016 15:37:57 +0100	87 lines
[git/dials] master: update download links (b35c4ba)	DIALS Commit via DLS Jenkins	Mon, 9 May 2016 14:08:31 +0100	130 lines
[git/dials] master: increase value of tolerance.detector.origin to 5e-2, fixes #136 (f5ece74)	DIALS Commit via DLS Jenkins	Mon, 9 May 2016 11:47:41 +0100	74 lines
[git/dials] master: make tolerance phil_scope reusable by moving to module-level (cc09897)	DIALS Commit via DLS Jenkins	Mon, 9 May 2016 11:03:23 +0100	378 lines
[git/dials] master: update download links (40fded2)	DIALS Commit via DLS Jenkins	Mon, 9 May 2016 08:19:27 +0100	158 lines
[git/dials_scratch] master: Add real_space_beam_simulation. (1ed8063)	DIALS Scratch Commit via DLS Jenkins	Sun, 8 May 2016 10:49:46 -0700	182 lines
[git/dials_scratch] master: Changes for asb/duelling_profiles.py (37c608c)	DIALS Scratch Commit via DLS Jenkins	Sun, 8 May 2016 09:51:20 -0700	233 lines
[git/dials] master: adding new colour themes to reflection viewer (fe03c36)	DIALS Commit via DLS Jenkins	Fri, 6 May 2016 17:19:27 +0100	850 lines
[git/dials] master: fix typo (229c58e)	DIALS Commit via DLS Jenkins	Fri, 6 May 2016 16:58:51 +0100	78 lines
[git/dials] master: better help string (19e1d34)	DIALS Commit via DLS Jenkins	Fri, 6 May 2016 16:58:51 +0100	94 lines
[git/dials] master: Added output showing spots < min size and > max size. (c1e9e31)	DIALS Commit via DLS Jenkins	Fri, 6 May 2016 16:01:39 +0100	761 lines
[git/dials] master: Added option to import as grid scan (d02bc63)	DIALS Commit via DLS Jenkins	Fri, 6 May 2016 15:18:37 +0100	117 lines
[git/dials] master: connecting new flag with the C++ part of the image generator for the reflection viewer (00e819a)	DIALS Commit via DLS Jenkins	Fri, 6 May 2016 14:31:56 +0100	238 lines
[git/dials] master: Added sweep diff for multiple sweeps (bcaaceb)	DIALS Commit via DLS Jenkins	Fri, 6 May 2016 14:12:23 +0100	137 lines
[git/dials_scratch] master: Bug fix for random_vector_cone. (2724ac0)	DIALS Scratch Commit via DLS Jenkins	Thu, 5 May 2016 16:50:31 -0700	73 lines
[git/dials_scratch] master: Bugfix for plots. (a5c7f06)	DIALS Scratch Commit via DLS Jenkins	Thu, 5 May 2016 09:39:18 -0700	76 lines
[git/dials_scratch] master: Add centroid (center of mass) of rays to plot. (8241414)	DIALS Scratch Commit via DLS Jenkins	Thu, 5 May 2016 09:29:38 -0700	111 lines
[git/dials] master: working new colour palette for reflection viewer, part 2, handling flags from the c++ side (f868cc0)	DIALS Commit via DLS Jenkins	Thu, 5 May 2016 15:37:22 +0100	98 lines
[git/dials] master: working new colour palette for reflection viewer, part 1, handling flags from the python side (62a3cc8)	DIALS Commit via DLS Jenkins	Thu, 5 May 2016 15:07:37 +0100	265 lines
[git/dials] master: adding features to reflection viewer, part 2, mask convention shown (dffb10f)	DIALS Commit via DLS Jenkins	Thu, 5 May 2016 14:33:39 +0100	278 lines
[git/dials] master: DIALS 1.2 released (2517573)	DIALS Commit via DLS Jenkins	Thu, 5 May 2016 13:45:54 +0100	154 lines
[git/dials] master: adding features to reflection viewer, part 2, mask convention shown (d11a8bd)	DIALS Commit via DLS Jenkins	Thu, 5 May 2016 11:51:21 +0100	199 lines
[git/dials] master: Tell the user what I did (0eb1a4a)	DIALS Commit via DLS Jenkins	Thu, 5 May 2016 11:41:53 +0100	102 lines
[git/dials] master: Added fix so that when reference reflections are passed in with no shoeboxes, it doesn't crash but uses profile info in experiments list (29ecafd)	DIALS Commit via DLS Jenkins	Thu, 5 May 2016 10:40:12 +0100	121 lines
[git/dials_scratch] master: Add interference_weighting option, implementing Kroon-Batenburg 2015 eqn 7. (50e9109)	DIALS Scratch Commit via DLS Jenkins	Wed, 4 May 2016 19:50:52 -0700	291 lines
[git/dials_scratch] master: No dispatcher (e750307)	DIALS Scratch Commit via DLS Jenkins	Wed, 4 May 2016 14:36:41 -0700	68 lines
[git/dials_scratch] master: Changes to my working copy of duelling_profiles.py to add support for stills. (4b549e2)	DIALS Scratch Commit via DLS Jenkins	Wed, 4 May 2016 14:26:56 -0700	568 lines
[git/dials_scratch] master: Copy of dials/command_line/duelling_profiles for me to tinker with. (7778c87)	DIALS Scratch Commit via DLS Jenkins	Wed, 4 May 2016 14:25:45 -0700	1222 lines
[git/dials] master: adding features to reflection viewer, part 1 (0aa1154)	DIALS Commit via DLS Jenkins	Wed, 4 May 2016 17:16:54 +0100	289 lines
[git/dials] tag 'v1.2.0' created	DIALS Commit via DLS Jenkins	Wed, 4 May 2016 11:34:04 +0100	28 lines
[git/dials] master: standard usage is to export using integrated_experiments.json (e647f80)	DIALS Commit via DLS Jenkins	Tue, 3 May 2016 14:30:58 +0100	79 lines
[git/dials] master: call release branches dials-1.x for consistency (d16dad1)	DIALS Commit via DLS Jenkins	Tue, 3 May 2016 10:21:42 +0100	76 lines
[git/dials] master: Allow detaching the parsing of command line parameters from reading image files to provide snappier responses to users. Resolves #54 for now. (230d664)	DIALS Commit via DLS Jenkins	Tue, 3 May 2016 09:40:56 +0100	261 lines
[git/dials] master: Report #still images not #still sets (86ed231)	DIALS Commit via DLS Jenkins	Tue, 3 May 2016 09:17:30 +0100	76 lines
[git/dials] master: In principle; accept compressed images (cd228a3)	DIALS Commit via DLS Jenkins	Tue, 3 May 2016 08:32:39 +0100	79 lines
[git/dials] master: Add stills specific index_only parameter. If enabled, completely skip determining mosaic parameters and all refinement. Also sync a few changes from indexer.py. (bfe2e9d)	DIALS Commit via DLS Jenkins	Sun, 1 May 2016 22:21:46 -0700	776 lines

DIALS-COMMIT Archives

May 2016

Options

Subject

From

Date

Size

JiscMail Tools

RSS Feeds and Sharing

Search Archives

Archives