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May 2019

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Subject	From	Date	Size
[git/dials] master: Fix scaling bug that can occur when some bin stats are None (1e96fffaf)	DIALS commit	Fri, 31 May 2019 15:40:42 +0100	182 lines
[git/dials] master: Add an assert to test #798. (dbd610c86)	DIALS commit	Fri, 31 May 2019 12:03:50 +0100	155 lines
[git/dials] master: Ensure all scan-varying models are updated. (93d2e8434)	DIALS commit	Fri, 31 May 2019 11:45:16 +0100	246 lines
[git/dials] master: Run flake8 only on pull requests (477492598)	DIALS commit	Wed, 29 May 2019 21:40:13 +0100	98 lines
[git/dials] master: Remove dials.combine_found_spots test, #794 (5ba2915c3)	DIALS commit	Wed, 29 May 2019 17:03:44 +0100	234 lines
[git/dials] master: Add some cheap bytes to make the output more readable (9fa72ed13)	DIALS commit	Wed, 29 May 2019 15:42:41 +0100	93 lines
[git/dials] master: Remove redundant command-line tool (9f5bca437)	DIALS commit	Wed, 29 May 2019 14:11:13 +0100	793 lines
[git/dials] master: Invert FPE defaults for dials (fb7b339a1)	DIALS commit	Wed, 29 May 2019 13:08:25 +0100	125 lines
[git/dials] master: fix import (9423b49fa)	DIALS commit	Wed, 29 May 2019 08:19:52 +0100	83 lines
[git/dials] master: prepare python packaging (09e3c9f4a)	DIALS commit	Tue, 28 May 2019 22:13:59 +0100	193 lines
[git/dials] master: Move pychef from xia2 to dials (11fac4e86)	DIALS commit	Tue, 28 May 2019 21:49:42 +0100	3610 lines
[git/dials_scratch] master: Split plotting script into extract and plot scripts (752afb6)	DIALS Scratch commit	Tue, 28 May 2019 13:26:45 +0100	484 lines
[git/dials_data] master: Add -q option to dials.data get for terse output (#56) (93e9a80)	dials-data commit	Tue, 28 May 2019 11:18:29 +0100	180 lines
[git/dials_scratch] master: Add plotting script for incremental scaling (073c2bb)	DIALS Scratch commit	Tue, 28 May 2019 11:12:02 +0100	252 lines
[git/dials] master: Fix Jenkins build (4fc035c8f)	DIALS commit	Tue, 28 May 2019 07:51:41 +0100	121 lines
[git/dials] master: Clean clutter (cd74d692f)	DIALS commit	Sun, 26 May 2019 05:10:21 +0100	115 lines
[git/dials] master: Enable precommitbx nagging, fixes #786 (c7586c2cc)	DIALS commit	Fri, 24 May 2019 21:52:44 +0100	97 lines
[git/dials] master: fix for 93b87f1c (d1bd43ce0)	DIALS commit	Fri, 24 May 2019 13:22:08 +0100	110 lines
[git/dials] master: cosym bug fix for inconsistent lattice_group determination (93b87f1c9)	DIALS commit	Fri, 24 May 2019 09:31:51 +0100	156 lines
[git/dials] master: cosym: average_unit_cell in space group symmetry before exporting (63d2fef81)	DIALS commit	Thu, 23 May 2019 16:17:05 +0100	108 lines
[git/dials] master: Fix bugs when updating data in scaling Ih_table. (80546d7f9)	DIALS commit	Wed, 22 May 2019 15:09:57 +0100	211 lines
[git/dials] master: Fix scaling instability when initial scales negative. (e29f24aa7)	DIALS commit	Wed, 22 May 2019 15:09:57 +0100	303 lines
[git/dials] master: xfailing test fixed by 0d86b1f (83c6d971d)	DIALS commit	Wed, 22 May 2019 13:10:30 +0100	108 lines
[git/dials] master: Avoid chance of zerodivisionerror in error modelling (94eec8bc2)	DIALS commit	Wed, 22 May 2019 11:58:45 +0100	117 lines
[git/dials] master: Fix error in scaling outlier rejection calculation (f89fc6c49)	DIALS commit	Wed, 22 May 2019 11:58:45 +0100	151 lines
[git/dials] master: workaround unstable mimimum cell reduction (cfb25dc62)	DIALS commit	Wed, 22 May 2019 11:23:18 +0100	138 lines
[git/dials] master: Handle dials.scale merging stats errors gracefully (b932a816d)	DIALS commit	Wed, 22 May 2019 09:10:37 +0100	214 lines
[git/dials] master: Call average_unit_cell in given space_group. (bfa12a943)	DIALS commit	Tue, 21 May 2019 17:15:59 +0100	114 lines
[git/dials] master: Revert d50b10a45296c901ffa373096afc91580d28ab90 (c2dfb8c62)	DIALS commit	Tue, 21 May 2019 17:09:52 +0100	103 lines
[git/dials] master: explicit space_group parameter in CosymAnalysis (0d86b1f18)	DIALS commit	Tue, 21 May 2019 17:05:28 +0100	239 lines
[git/dials] master: Attempt to fix failing test (d74ee1b3e)	DIALS commit	Tue, 21 May 2019 15:35:24 +0100	102 lines
[git/dials] master: Tool to compute distribution of spots (950f0ad9b)	DIALS commit	Tue, 21 May 2019 09:55:12 +0100	270 lines
[git/dials] master: Fix typo (c92cf46e6)	DIALS commit	Tue, 21 May 2019 08:52:26 +0100	88 lines
[git/dials] master: Campsite (f98f969bc)	DIALS commit	Tue, 21 May 2019 08:44:51 +0100	91 lines
[git/dials] master: Finder of bad pixels (979865784)	DIALS commit	Tue, 21 May 2019 08:44:51 +0100	385 lines
[git/dials] master: address H5pyDeprecationWarnings (bd44e0108)	DIALS commit	Tue, 21 May 2019 00:08:36 +0100	923 lines
[git/dials] master: Bugfix for dials.scale stats_only mode (no stats shown) (74f31ec88)	DIALS commit	Mon, 20 May 2019 16:47:01 +0100	228 lines
[git/dials] master: cb_op_inp_min has already been applied in the base class (d50b10a45)	DIALS commit	Mon, 20 May 2019 16:01:29 +0100	102 lines
[git/dials] master: cosym bug fix: need to apply self.cb_op_inp_min to reindexing ops (a64c4eb39)	DIALS commit	Mon, 20 May 2019 16:01:29 +0100	110 lines
[git/dials] master: Require procrunner environment leakage fix (af3d32b74)	DIALS commit	Mon, 20 May 2019 12:03:33 +0100	85 lines
[git/dials] master: Write something to output when run with override (3b9d45ba2)	DIALS commit	Mon, 20 May 2019 12:03:23 +0100	112 lines
[git/dials] master: Attempt at fixing failing dials.export best test (79cf1ad6d)	DIALS commit	Mon, 20 May 2019 09:54:41 +0100	118 lines
[git/dials] master: Clean clutter (b9b3a79ee)	DIALS commit	Sun, 19 May 2019 05:10:23 +0100	115 lines
[git/dials] master: Update scale_and_filter test results from partiality changes (5a84c279e)	DIALS commit	Fri, 17 May 2019 15:06:01 +0100	129 lines
[git/dials] master: Filter on min_partiality for scaling error model (362d9ca8c)	DIALS commit	Fri, 17 May 2019 12:00:50 +0100	348 lines
[git/dials] master: Update default partiality options in scaling. (ffa9dd4cd)	DIALS commit	Fri, 17 May 2019 12:00:50 +0100	129 lines
[git/dials] master: Remove references to dev.a_e_i (55564002c)	DIALS commit	Fri, 17 May 2019 10:18:13 +0100	290 lines
[git/dials] master: fix up few more imports (3e0509add)	DIALS commit	Thu, 16 May 2019 22:50:23 +0100	374 lines
[git/dials] master: graduation. congratulations (883f5e952)	DIALS commit	Thu, 16 May 2019 16:46:58 +0100	84 lines
[git/dials] master: code cleanup (e3fb51ca4)	DIALS commit	Thu, 16 May 2019 12:28:37 +0100	974 lines
[git/dials] master: logger.warn is deprecated (aec1b3005)	DIALS commit	Thu, 16 May 2019 10:35:05 +0100	710 lines
[git/dials] master: forward compatibility (0a22ca032)	DIALS commit	Thu, 16 May 2019 10:23:30 +0100	93 lines
[git/dials] master: fix cStringIO (7afeb8ac3)	DIALS commit	Thu, 16 May 2019 10:03:20 +0100	373 lines
[git/dials] master: if lattice_group provided then map intensities to primitive setting (5c13ea5e2)	DIALS commit	Wed, 15 May 2019 16:30:49 +0100	94 lines
[git/dials] master: Report on partiality distribution in scaling summary. (716216301)	DIALS commit	Wed, 15 May 2019 14:47:37 +0100	189 lines
[git/dials] master: cosym: bug fixes for map_to_primitive (db7fd24b4)	DIALS commit	Wed, 15 May 2019 13:59:11 +0100	135 lines
[git/dials] master: Reject commits adding files >200kB (2e39d2ed4)	DIALS commit	Wed, 15 May 2019 11:57:02 +0100	84 lines
[git/dials] master: Add check-merge-conflict pre-commit hook. (0d8fdc50e)	DIALS commit	Wed, 15 May 2019 11:51:56 +0100	79 lines
[git/dials] master: Split multi-wavelength datasets in dials.scale before export (14f942387)	DIALS commit	Mon, 13 May 2019 15:39:09 +0100	870 lines
[git/dials] master: Implement multi-wavelength mtz file output. Fixes #780 (3d2a9af9a)	DIALS commit	Mon, 13 May 2019 15:36:17 +0100	738 lines
[git/dials] master: Ensure reflections fill the scan-range sufficiently. (fdc06f206)	DIALS commit	Thu, 9 May 2019 11:14:01 +0100	307 lines
[git/dials] master: cosym: output experiments in acentric space group (93adff181)	DIALS commit	Thu, 9 May 2019 10:27:43 +0100	216 lines
[git/dials_data] master: Merge pull request #54 from dials/update-vmxi_proteinase_k_sweeps (43a811e)	dials-data commit	Thu, 9 May 2019 09:50:45 +0100	69 lines
[git/dials] master: Revert "Ensure reflections fill the scan-range sufficiently." (f364d2201)	DIALS commit	Wed, 8 May 2019 21:44:48 +0100	202 lines
[git/dials] master: Ensure reflections fill the scan-range sufficiently. (284896882)	DIALS commit	Wed, 8 May 2019 16:37:35 +0100	199 lines
[git/dials] master: Fix lgtm warnings, clean code up. (bd1be8a08)	DIALS commit	Wed, 8 May 2019 16:23:10 +0100	578 lines
[git/dials] master: Update multiplex/multi-crystal scaling tutorial for dials 1.14.4 (6973e23d0)	DIALS commit	Wed, 8 May 2019 15:37:32 +0100	290 lines
[git/dials_data] master: Update file information for dataset vmxi_proteinase_k_sweeps (5df1095)	dials-data commit	Wed, 8 May 2019 13:55:25 +0000	116 lines
[git/dials_data] master: Trigger update of dataset vmxi_proteinase_k_sweeps (73947a4)	dials-data commit	Wed, 8 May 2019 13:51:18 +0000	58 lines
[git/dials_data] master: Merge pull request #53 from jbeilstenedmands/add_prot_k_sweeps (c7cded6)	dials-data commit	Wed, 8 May 2019 14:47:21 +0100	71 lines
[git/dials_data] master: Add definition of a set of four prot-k integrated datafiles (f84c247)	dials-data commit	Wed, 8 May 2019 14:13:10 +0100	130 lines
[git/dials] master: Update dials tutorial; symmetry and scaling sections. (5cf603b00)	DIALS commit	Wed, 8 May 2019 13:41:31 +0100	353 lines
[git/dials] master: Fix zerodivison error in scaling observers calculation. (0ef36d3c7)	DIALS commit	Wed, 8 May 2019 11:30:28 +0100	101 lines
[git/dials] master: Use 'suitable' refls for single-dataset refl selection (86da81f50)	DIALS commit	Wed, 8 May 2019 11:29:13 +0100	185 lines
[git/dials] master: Fix scaling tests after plotting update. (20794b89f)	DIALS commit	Wed, 8 May 2019 09:56:28 +0100	229 lines
[git/dials] master: In scaling report use anom. sig. cutoff as d_min for plots (d4890c4a2)	DIALS commit	Wed, 8 May 2019 09:25:03 +0100	186 lines
[git/dials] master: in slice_experiment need to also slice imageset (ace60e452)	DIALS commit	Tue, 7 May 2019 17:26:07 +0100	127 lines
[git/dials] master: finish writing test (738bda7cb)	DIALS commit	Tue, 7 May 2019 17:22:08 +0100	102 lines
[git/dials] master: move slice_experiments, slice_reflections to dials.utils.slice (15757770a)	DIALS commit	Tue, 7 May 2019 17:15:32 +0100	553 lines
[git/dials] master: Update scaling error model. (41812627e)	DIALS commit	Tue, 7 May 2019 16:40:20 +0100	427 lines
[git/dials] master: Include more reflections in scaling minimisation (c037963e4)	DIALS commit	Tue, 7 May 2019 16:40:20 +0100	129 lines
[git/dials_scratch] master: Clean clutter (f93a634)	DIALS Scratch commit	Sun, 5 May 2019 05:10:25 +0100	134 lines
[git/dials] master: Bugfix in constraints manager (12f8b883c)	DIALS commit	Fri, 3 May 2019 14:47:01 -0700	107 lines
[git/dials] master: Correct a type hint (3a1132253)	DIALS commit	Fri, 3 May 2019 18:02:03 +0100	109 lines
[git/dials] master: Split long type declaration (d3d2922ee)	DIALS commit	Fri, 3 May 2019 15:31:25 +0100	99 lines
[git/dials] master: Add reminder for developers to install pre-commits (7ce0b4fcd)	DIALS commit	Fri, 3 May 2019 14:17:19 +0100	284 lines
[git/dials] master: For #693: handle useless h5 files (e7214a08a)	DIALS commit	Fri, 3 May 2019 13:43:19 +0100	172 lines
[git/dials] master: Remove duplicated line (1ae5436d8)	DIALS commit	Fri, 3 May 2019 13:43:19 +0100	85 lines
[git/dials] master: Fix dangling open, and make autocomplete SConscript blacked (d205020fc)	DIALS commit	Fri, 3 May 2019 13:39:10 +0100	302 lines
[git/dials] master: Run on repositories registered via entrypoint (b0816c723)	DIALS commit	Fri, 3 May 2019 13:09:46 +0100	293 lines
[git/dials_scratch] master: enable proper pre-commits for dials_scratch (3792eb9)	DIALS Scratch commit	Fri, 3 May 2019 12:40:38 +0100	144 lines
[git/dials] master: enable proper pre-commits for dials (a1a56a31c)	DIALS commit	Fri, 3 May 2019 12:39:25 +0100	144 lines
[git/dials] master: Fix shadowing of python builtin names (#775) (9bf12a351)	DIALS commit	Fri, 3 May 2019 11:59:32 +0100	631 lines
[git/dials] master: Run flake8 tests during testing stage (e9bb46d0b)	DIALS commit	Fri, 3 May 2019 09:02:23 +0100	161 lines
[git/dials] master: Combine all __future__ imports into one statement (1a873c105)	DIALS commit	Thu, 2 May 2019 15:02:18 +0100	1151 lines
[git/dials] master: While looking into what test should do, remove offending example (93b116694)	DIALS commit	Thu, 2 May 2019 14:45:59 +0100	95 lines
[git/dials] master: Black (7ef48192b)	DIALS commit	Thu, 2 May 2019 14:45:20 +0100	89 lines
[git/dials] master: Revert dropping cache (3d65105af)	DIALS commit	Thu, 2 May 2019 13:55:57 +0100	352 lines
[git/dials] master: Handle split sweeps in export_mtz: the batch offsets should all be 0 but the start images are != 0 => effectively they are correct - fixes (I think) xia2/xia2#299 - batch_handling.py has a subtle change which would probably benefit from review; also flake8 cleanup of unused things (12a0b001c)	DIALS commit	Thu, 2 May 2019 13:53:44 +0100	169 lines
[git/dials] master: Do not attempt to add pseudo-file to cache (304a26cf1)	DIALS commit	Thu, 2 May 2019 13:31:38 +0100	102 lines
[git/dials] master: Drop cache from phil file importer (1d23379c3)	DIALS commit	Thu, 2 May 2019 12:58:58 +0100	297 lines
[git/dials] master: fix documentation (32a128eac)	DIALS commit	Thu, 2 May 2019 09:45:14 +0100	99 lines
[git/dials_data] master: Scheduled monthly dependency update for May (#52) (2e14bfc)	dials-data commit	Wed, 1 May 2019 19:35:40 +0100	144 lines
[git/dials] master: Adjust error model filtering. (bdbe68fc1)	DIALS commit	Wed, 1 May 2019 13:53:10 +0100	100 lines
[git/dials] master: Fix "Load file" button. (c3c03e02b)	DIALS commit	Wed, 1 May 2019 12:21:59 +0100	133 lines
[git/dials] master: Partially revert 7189f - Merge pull #743 from msgpack_as_default (33fa54729)	DIALS commit	Wed, 1 May 2019 12:09:28 +0100	393 lines
[git/dials] master: Tab complete .mpack files. Fixes #771 (13653b5d1)	DIALS commit	Wed, 1 May 2019 12:01:01 +0100	90 lines
[git/dials] master: Add documentation for dials.align_crystal (da30490d0)	DIALS commit	Wed, 1 May 2019 11:54:57 +0100	145 lines
[git/dials] master: Add ability to turn off scaling.html report generation (9bc6f9a51)	DIALS commit	Wed, 1 May 2019 11:07:53 +0100	121 lines
[git/dials] master: Minor updates to scaling error model code and anom plots (5462e1377)	DIALS commit	Wed, 1 May 2019 11:07:53 +0100	210 lines
[git/dials_scratch] master: Add mosaicity and beam divergence (c9a1bc1)	DIALS Scratch commit	Wed, 1 May 2019 10:42:10 +0100	125 lines

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May 2019

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