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November 2016

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Subject	From	Date	Size
[git/dials] master: correct comment (7ce71b0)	DIALS Commit via DLS Jenkins	Wed, 30 Nov 2016 20:01:09 +0000	69 lines
[git/dials] master: Function to scale the rows of a sparse matrix by the elements of a vector (95b20a6)	DIALS Commit via DLS Jenkins	Wed, 30 Nov 2016 20:01:09 +0000	388 lines
[git/dials] master: add to run_tests (bd8a0bb)	DIALS Commit via DLS Jenkins	Wed, 30 Nov 2016 20:01:09 +0000	72 lines
[git/dials] master: Use row_multiply to calc derivatives (64a798c)	DIALS Commit via DLS Jenkins	Wed, 30 Nov 2016 20:01:09 +0000	208 lines
[git/dials] master: Bugfix for MPI, missing imports. (1299673)	DIALS Commit via DLS Jenkins	Wed, 30 Nov 2016 11:58:23 -0800	88 lines
[git/dials_scratch] master: example of iterating over the non-zero elements of a sparse matrix (e036e74)	DIALS Scratch Commit via DLS Jenkins	Wed, 30 Nov 2016 15:48:34 +0000	267 lines
[git/dials] master: Fixed print (df68931)	DIALS Commit via DLS Jenkins	Tue, 29 Nov 2016 16:52:48 +0000	76 lines
[git/dials] master: sanity check that gonio is MultiAxisGoniometer instance (ecb3bd1)	DIALS Commit via DLS Jenkins	Tue, 29 Nov 2016 16:21:41 +0000	105 lines
[git/dials] master: dials.align_crystal: output json file containing solutions (764000e)	DIALS Commit via DLS Jenkins	Tue, 29 Nov 2016 16:10:54 +0000	248 lines
[git/dials] master: add help for dials.align_crystal (757018d)	DIALS Commit via DLS Jenkins	Tue, 29 Nov 2016 13:57:31 +0000	120 lines
[git/dials] master: Word 'skipping' in the output indicates to our testing framework that the test was skipped. :/ (ad2c735)	DIALS Commit via DLS Jenkins	Tue, 29 Nov 2016 13:04:11 +0000	80 lines
[git/dials] master: add help for dials.goniometer_calibration; add test (7497988)	DIALS Commit via DLS Jenkins	Tue, 29 Nov 2016 12:23:15 +0000	305 lines
[git/dials] master: dials.shadow_plot: add help; bail out sensibly if goniometer model does not support masking; tweak 2d plot (5728cef)	DIALS Commit via DLS Jenkins	Tue, 29 Nov 2016 10:15:56 +0000	123 lines
[git/dials] master: Partial revert. copy_experiments=False may not be the right solution... (cc68810)	DIALS Commit via DLS Jenkins	Mon, 28 Nov 2016 16:12:15 -0800	82 lines
[git/dials] master: Merge pull request #259 from dials/dials-258 (0f9df0e)	DIALS Commit via DLS Jenkins	Mon, 28 Nov 2016 23:17:42 +0000	57 lines
[git/dials] master: Allow the GaussianSmoother to perform calculations for multiple data from a single call, to be used in scaling code (6c859c0)	DIALS Commit via DLS Jenkins	Mon, 28 Nov 2016 20:52:59 +0000	621 lines
[git/dials] master: Missing from earlier commit (affe393)	DIALS Commit via DLS Jenkins	Mon, 28 Nov 2016 12:07:09 -0800	73 lines
[git/dials] master: Fix for #258, making deepcopy of experiments in refiner optional. (f2ff556)	DIALS Commit via DLS Jenkins	Mon, 28 Nov 2016 11:25:39 -0800	286 lines
[git/dials] master: disallow input that could result in a divide-by-zero (78d44ca)	DIALS Commit via DLS Jenkins	Mon, 28 Nov 2016 11:56:16 +0000	86 lines
[git/dials] master: Fixed bug in expectation calculation (78e17b1)	DIALS Commit via DLS Jenkins	Mon, 28 Nov 2016 10:40:45 +0000	226 lines
[git/dials] master: First commit on tag is '.0' release (94bdb60)	DIALS Commit via DLS Jenkins	Fri, 25 Nov 2016 15:26:24 +0000	86 lines
[git/dials] tag 'v1.4.0' created	DIALS Commit via DLS Jenkins	Fri, 25 Nov 2016 15:14:30 +0000	28 lines
[git/dials] master: Added an algorithm to compute gaussian parameters from binned data using the expectation maximization method. (86be966)	DIALS Commit via DLS Jenkins	Fri, 25 Nov 2016 09:30:43 +0000	880 lines
[git/dials] master: bug fix for GaussianSmoother with only two positions (5e1dd27)	DIALS Commit via DLS Jenkins	Thu, 24 Nov 2016 11:19:03 +0000	83 lines
[git/dials] master: Drop-in replacement for the GaussianSmoother in C++ (b94e835)	DIALS Commit via DLS Jenkins	Thu, 24 Nov 2016 11:19:03 +0000	1042 lines
[git/dials] master: remove irrelevant 'pass' (e84cd8b)	DIALS Commit via DLS Jenkins	Thu, 24 Nov 2016 11:19:03 +0000	80 lines
[git/dials] master: Performance increases for import step of dials.stills_process for Eiger data. (e1be355)	DIALS Commit via DLS Jenkins	Wed, 23 Nov 2016 18:48:51 -0800	158 lines
[git/dials] master: renamed files (58d16f0)	DIALS Commit via DLS Jenkins	Tue, 22 Nov 2016 17:18:46 +0000	168 lines
[git/dials] master: Enabled multi panel gridding with grid_method=spherical_grid. Fixes #196 (ef0ccd4)	DIALS Commit via DLS Jenkins	Tue, 22 Nov 2016 14:23:02 +0000	90 lines
[git/dials_scratch] master: default call should actually use the default argument (01ded83)	DIALS Scratch Commit via DLS Jenkins	Tue, 22 Nov 2016 14:05:01 +0000	75 lines
[git/dials_scratch] master: Demonstrate array 'slicing' using the iterator constructor, and use of the BOOST_PYTHON_FUNCTION_OVERLOADS macro to handle default arguments (7da53be)	DIALS Scratch Commit via DLS Jenkins	Tue, 22 Nov 2016 14:03:05 +0000	292 lines
[git/dials] master: Made modeller multi panel aware (991f8e6)	DIALS Commit via DLS Jenkins	Tue, 22 Nov 2016 13:40:37 +0000	1083 lines
[git/dials] master: Changed to fix windows build (612c703)	DIALS Commit via DLS Jenkins	Tue, 22 Nov 2016 13:40:37 +0000	103 lines
[git/dials] master: Removed unused variables (58ddc49)	DIALS Commit via DLS Jenkins	Tue, 22 Nov 2016 13:40:37 +0000	258 lines
[git/dials] master: Fixed tests (ca49498)	DIALS Commit via DLS Jenkins	Tue, 22 Nov 2016 13:40:37 +0000	645 lines
[git/dials] master: adding a parameter to automated report generator use in iDIALS (d89f5b1)	DIALS Commit via DLS Jenkins	Tue, 22 Nov 2016 11:32:24 +0000	75 lines
[git/dials_scratch] master: Example to ensure I can write a C++ function that returns a scitbx sparse matrix to Python (768d50a)	DIALS Scratch Commit via DLS Jenkins	Tue, 22 Nov 2016 11:29:40 +0000	309 lines
[git/dials] master: now works (3667a29)	DIALS Commit via DLS Jenkins	Mon, 21 Nov 2016 22:01:40 +0000	84 lines
[git/dials] master: Start work on classes related to the basis function and its parameterisation (42af96c)	DIALS Commit via DLS Jenkins	Mon, 21 Nov 2016 22:01:40 +0000	323 lines
[git/dials] master: Fixed stderr output (2fdfbf0)	DIALS Commit via DLS Jenkins	Mon, 21 Nov 2016 16:51:47 +0000	89 lines
[git/dials] master: Added sampler class to do gridding for multi panel detectors for profile fitting (fe88fa6)	DIALS Commit via DLS Jenkins	Mon, 21 Nov 2016 16:12:36 +0000	1233 lines
[git/dials_scratch] master: only plot reflections used_in_refinement; also plot nref, centroid s.d.'s (eacd02b)	DIALS Scratch Commit via DLS Jenkins	Fri, 18 Nov 2016 15:28:54 +0000	177 lines
[git/dials_scratch] master: add min_reflections param (cfbf97f)	DIALS Scratch Commit via DLS Jenkins	Fri, 18 Nov 2016 14:15:41 +0000	89 lines
[git/dials_scratch] master: script to calculate rmsds vs spot size (609e80b)	DIALS Scratch Commit via DLS Jenkins	Fri, 18 Nov 2016 12:40:40 +0000	217 lines
[git/dials_scratch] master: Added centroid variance sim (5c17667)	DIALS Scratch Commit via DLS Jenkins	Thu, 17 Nov 2016 11:31:04 +0000	441 lines
[git/dials] master: Added a parameter to translate the detector in import. (b3ba0b5)	DIALS Commit via DLS Jenkins	Thu, 17 Nov 2016 10:41:24 +0000	186 lines
[git/dials] master: Made ice ring filter with resolution ranges from andrea. Added flag to remove reflections in ice rings in dials.export. Fixes #194 (d2c418c)	DIALS Commit via DLS Jenkins	Thu, 17 Nov 2016 09:56:26 +0000	404 lines
[git/dials_scratch] master: Improved formats, more data points (049ab5e)	DIALS Scratch Commit via DLS Jenkins	Thu, 17 Nov 2016 08:33:14 +0000	110 lines
[git/dials_scratch] master: Better format (b636d0f)	DIALS Scratch Commit via DLS Jenkins	Thu, 17 Nov 2016 08:20:32 +0000	74 lines
[git/dials_scratch] master: Toy centroid calculations (19afb8e)	DIALS Scratch Commit via DLS Jenkins	Thu, 17 Nov 2016 08:18:47 +0000	132 lines
[git/dials] master: Commented out centroid changes. Correct behaviour yet to be determined. (c4a9502)	DIALS Commit via DLS Jenkins	Wed, 16 Nov 2016 16:40:07 +0000	557 lines
[git/dials] master: some logger.warnings missed off 6116718 (ba7aaff)	DIALS Commit via DLS Jenkins	Wed, 16 Nov 2016 11:04:58 +0000	133 lines
[git/dials] master: Tell git diff to create slightly more helpful hunk headers (b8451cc)	DIALS Commit via DLS Jenkins	Wed, 16 Nov 2016 08:24:08 +0000	64 lines
[git/dials] master: Adding bias calc into centroid algoritm (08b81a6)	DIALS Commit via DLS Jenkins	Tue, 15 Nov 2016 11:45:58 +0000	201 lines
[git/dials] master: Fixing centroid calculation (3cfdc3a)	DIALS Commit via DLS Jenkins	Tue, 15 Nov 2016 11:45:58 +0000	134 lines
[git/dials] master: Added centroid bias calculation (a3314a8)	DIALS Commit via DLS Jenkins	Tue, 15 Nov 2016 11:45:58 +0000	301 lines
[git/dials] master: Added a test (0c4c0d9)	DIALS Commit via DLS Jenkins	Tue, 15 Nov 2016 11:45:58 +0000	412 lines
[git/dials] master: Added a command line program to generate a bias lookup table for centroid variances (bf89fdb)	DIALS Commit via DLS Jenkins	Tue, 15 Nov 2016 11:45:58 +0000	204 lines
[git/dials] master: Merge pull request #255 from nwmoriarty/master (801a129)	DIALS Commit via DLS Jenkins	Mon, 14 Nov 2016 13:21:16 -0800	54 lines
[git/dials] master: error printing (30253b8)	DIALS Commit via DLS Jenkins	Mon, 14 Nov 2016 13:06:30 -0800	918 lines
[git/dials] master: Add files via upload (0837124)	DIALS Commit via DLS Jenkins	Mon, 14 Nov 2016 13:02:32 -0800	87 lines
[git/dials] master: Don't fail the setpaths.sh scripts when autocompletion is not available (4f7e260)	DIALS Commit via DLS Jenkins	Mon, 14 Nov 2016 13:50:14 +0000	87 lines
[git/dials] master: Bugfix for refining using detector_reduce (bcdc6fa)	DIALS Commit via DLS Jenkins	Fri, 11 Nov 2016 14:22:49 -0800	140 lines
[git/dials] master: Bugfix for integrating a bunch of stills from a combined_experiments.json and combined_experiments.pickle reference. (c327d08)	DIALS Commit via DLS Jenkins	Fri, 11 Nov 2016 14:13:36 -0800	158 lines
[git/dials] master: Bugfixes for spotfinder_frame when using dials.image_viewer with an experiments.json file including a crystal model. (b02a47f)	DIALS Commit via DLS Jenkins	Fri, 11 Nov 2016 13:52:47 -0800	177 lines
[git/dials] master: Skip test if dials_regression not available. (281cf80)	DIALS Commit via DLS Jenkins	Thu, 10 Nov 2016 17:03:00 +0000	100 lines
[git/dials] master: another get_rotation_axis() -> get_rotation_axis_datum() fix (8bf96b9)	DIALS Commit via DLS Jenkins	Thu, 10 Nov 2016 16:46:51 +0000	78 lines
[git/dials] master: add FIXME to export_mtz (db8ac70)	DIALS Commit via DLS Jenkins	Thu, 10 Nov 2016 15:54:21 +0000	89 lines
[git/dials] master: after discussion with GW this should be axis at datum (25c6939)	DIALS Commit via DLS Jenkins	Thu, 10 Nov 2016 15:40:13 +0000	113 lines
[git/dials] master: fixes for get_rotation_axis() vs get_rotation_axis_datum() plus a couple of XXX to be resolved (8304cbf)	DIALS Commit via DLS Jenkins	Thu, 10 Nov 2016 15:09:22 +0000	248 lines
[git/dials] master: actually test what was meant to be tested (89f69f8)	DIALS Commit via DLS Jenkins	Thu, 10 Nov 2016 14:45:06 +0000	76 lines
[git/dials] master: sync with dxtbx goniometer changes to goniometer.get_rotation_axis()/goniometer.get_rotation_axis_datum() (7f2e000)	DIALS Commit via DLS Jenkins	Thu, 10 Nov 2016 13:50:26 +0000	722 lines
[git/dials] master: update failing test (8567737)	DIALS Commit via DLS Jenkins	Thu, 10 Nov 2016 11:09:12 +0000	75 lines
[git/dials] master: test that indexing/refinement results for phi-scans are identical for effective_axis_as_fixed vs true multi-axis goniometer implementation (a0836ce)	DIALS Commit via DLS Jenkins	Thu, 10 Nov 2016 11:03:46 +0000	276 lines
[git/dials] master: putative fixes for refinement when setting_rotation is not identity (cf251f6)	DIALS Commit via DLS Jenkins	Wed, 9 Nov 2016 17:23:49 +0000	195 lines
[git/dials] master: bug fix for DBEM if setting_rotation is not identity matrix (dfa7747)	DIALS Commit via DLS Jenkins	Wed, 9 Nov 2016 16:40:11 +0000	86 lines
[git/dials] master: This did not resolve the issue (dc231ea)	DIALS Commit via DLS Jenkins	Wed, 9 Nov 2016 10:39:11 +0000	74 lines
[git/dials_scratch] master: Bugfixes (881d609)	DIALS Scratch Commit via DLS Jenkins	Tue, 8 Nov 2016 15:26:42 -0800	211 lines
[git/dials_scratch] master: correct comment (cbac01d)	DIALS Scratch Commit via DLS Jenkins	Tue, 8 Nov 2016 17:15:16 +0000	90 lines
[git/dials] master: tidy comments (ba5b64a)	DIALS Commit via DLS Jenkins	Tue, 8 Nov 2016 16:43:05 +0000	94 lines
[git/dials_scratch] master: Example of array printing as a debug tool (9c33750)	DIALS Scratch Commit via DLS Jenkins	Tue, 8 Nov 2016 16:41:51 +0000	351 lines
[git/dials_scratch] master: Learning by trial and error works best when the errors are recorded. (25021c0)	DIALS Scratch Commit via DLS Jenkins	Tue, 8 Nov 2016 15:36:03 +0000	560 lines
[git/dials] master: Move import to correct place (6abdcdd)	DIALS Commit via DLS Jenkins	Tue, 8 Nov 2016 14:00:57 +0000	86 lines
[git/dials] master: Apparently there still is a spurious race condition here (531e648)	DIALS Commit via DLS Jenkins	Tue, 8 Nov 2016 13:03:54 +0000	99 lines
[git/dials] master: @jmp1985 shared some array_family wisdom and now the accessor works. Thanks! (0a56477)	DIALS Commit via DLS Jenkins	Tue, 8 Nov 2016 10:54:43 +0000	126 lines
[git/dials] master: report number of masked pixels in each image to find_spots debug log (4c1a715)	DIALS Commit via DLS Jenkins	Tue, 8 Nov 2016 09:55:29 +0000	80 lines
[git/dials] master: Add comment about accessor that doesn't yet work because not enough Boost black magic (c173db7)	DIALS Commit via DLS Jenkins	Mon, 7 Nov 2016 18:26:08 +0000	83 lines
[git/dials] master: Add accessors to Python ObservationManager served underneath by C++ GroupedObservations (5396b1a)	DIALS Commit via DLS Jenkins	Mon, 7 Nov 2016 18:23:45 +0000	245 lines
[git/dials] master: Add to run_tests (6faa338)	DIALS Commit via DLS Jenkins	Mon, 7 Nov 2016 15:47:57 +0000	72 lines
[git/dials] master: Add accessor for phi, change group size getter name (3743eae)	DIALS Commit via DLS Jenkins	Mon, 7 Nov 2016 15:45:03 +0000	169 lines
[git/dials] master: Test for calculation of average intensity in scaling groups (6f82105)	DIALS Commit via DLS Jenkins	Mon, 7 Nov 2016 15:42:40 +0000	163 lines
[git/dials] master: Test for minimum_multiplicity_selection (367f8dd)	DIALS Commit via DLS Jenkins	Mon, 7 Nov 2016 15:06:32 +0000	171 lines
[git/dials] master: A place for scaling algorithm tests (3f86f45)	DIALS Commit via DLS Jenkins	Mon, 7 Nov 2016 10:28:28 +0000	57 lines
[git/dials] master: Complete GroupedObservations with additional accessors and function to calculate the HRS average intensity in groups (b21f9da)	DIALS Commit via DLS Jenkins	Mon, 7 Nov 2016 10:26:32 +0000	304 lines
[git/dials] master: Comment about function (e1cbe5d)	DIALS Commit via DLS Jenkins	Mon, 7 Nov 2016 10:26:32 +0000	91 lines
[git/dials] master: work on ObservationManager and its helpers (a92956e)	DIALS Commit via DLS Jenkins	Mon, 7 Nov 2016 10:26:32 +0000	968 lines
[git/dials] master: the place for scaling algorithm development (1f9419d)	DIALS Commit via DLS Jenkins	Mon, 7 Nov 2016 10:26:32 +0000	58 lines
[git/dials_scratch] master: simple script to test MessagePack (5747e60)	DIALS Scratch Commit via DLS Jenkins	Fri, 4 Nov 2016 12:06:42 +0000	100 lines
[git/dials_scratch] master: tweak plot limits (2ecb4c4)	DIALS Scratch Commit via DLS Jenkins	Thu, 3 Nov 2016 17:21:39 +0000	80 lines
[git/dials_scratch] master: moved to dials.shadow_plot (aabb486)	DIALS Scratch Commit via DLS Jenkins	Thu, 3 Nov 2016 17:20:35 +0000	523 lines
[git/dials] master: new command dials.shadow_plot (mode=1d or mode=2d) (f487154)	DIALS Commit via DLS Jenkins	Thu, 3 Nov 2016 17:20:05 +0000	429 lines
[git/dials_scratch] master: script to generate plots comparing merging stats for multiple scaled unmerged mtz files (00642e8)	DIALS Scratch Commit via DLS Jenkins	Thu, 3 Nov 2016 16:04:09 +0000	316 lines
[git/dials_scratch] master: script to generate shadow plot for a scan (9b04321)	DIALS Scratch Commit via DLS Jenkins	Wed, 2 Nov 2016 17:06:36 +0000	315 lines
[git/dials] master: Tool to calculate correlation coefficients between images; not sure useful yet, seems to come out close to 1 every time? (b419b38)	DIALS Commit via DLS Jenkins	Wed, 2 Nov 2016 09:50:00 +0000	209 lines
[git/dials] master: Trap too few reflections in local indexing. (066c90f)	DIALS Commit via DLS Jenkins	Wed, 2 Nov 2016 17:56:25 +0900	122 lines
[git/dials] master: Trap too few reflections in local indexing. (be82eb1)	DIALS Commit via DLS Jenkins	Wed, 2 Nov 2016 14:30:01 +0900	91 lines
[git/dials] master: moved to scitbx.math (c6f054d)	DIALS Commit via DLS Jenkins	Tue, 1 Nov 2016 16:15:34 +0000	915 lines
[git/dials] master: moved to scitbx.math (dd912f9)	DIALS Commit via DLS Jenkins	Tue, 1 Nov 2016 15:47:20 +0000	430 lines
[git/dials] master: moved to scitbx.math (921657a)	DIALS Commit via DLS Jenkins	Tue, 1 Nov 2016 15:39:00 +0000	144 lines
[git/dials_scratch] master: Remove rustic return (53b2719)	DIALS Scratch Commit via DLS Jenkins	Tue, 1 Nov 2016 15:02:50 +0000	70 lines
[git/dials_scratch] master: remove print statement (cbe8d75)	DIALS Scratch Commit via DLS Jenkins	Tue, 1 Nov 2016 14:55:57 +0000	72 lines
[git/dials] master: take into account panel id and panel raw_image_offset on xyzcal and xyzobs px values (b4df24d)	DIALS Commit via DLS Jenkins	Tue, 1 Nov 2016 14:26:34 +0000	123 lines
[git/dials_scratch] master: take into account raw_image_offset in FILTER.HKL output (3c09a6d)	DIALS Scratch Commit via DLS Jenkins	Tue, 1 Nov 2016 14:23:40 +0000	111 lines
[git/dials_scratch] master: script to filter shadowed reflections (1febb81)	DIALS Scratch Commit via DLS Jenkins	Tue, 1 Nov 2016 13:37:43 +0000	241 lines
[git/dials] master: support for reflection pickle imported from INTEGRATE.HKL (c1b9ee1)	DIALS Commit via DLS Jenkins	Tue, 1 Nov 2016 11:55:56 +0000	73 lines
[git/dials] master: fix typo in comment (d3e14f7)	DIALS Commit via DLS Jenkins	Tue, 1 Nov 2016 11:55:28 +0000	71 lines

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