JISCMail - CCTBX-COMMIT Archives

Email discussion lists for the UK Education and Research communities

Subscriber's Corner

Email Lists

CCTBX-COMMIT Archives

April 2017

View:

Show Author | Hide Author

		LISTSERV Archives
		CCTBX-COMMIT Home

Options

Subscribe or Unsubscribe

Get Password

Subject	From	Date	Size
[git/cctbx] master: bug fix (adf1e0818)	CCTBX Commit via DLS Jenkins	Sat, 29 Apr 2017 16:14:50 -0700	71 lines
Jenkins 5b cctbx MacOS build 1227 Unstable	Jenkins Build Server (Diamond)	Sat, 29 Apr 2017 03:42:12 +0100	266 lines
[git/cctbx] master: phenix.mtriage: new command line tool to assess qualities of cryo-EM maps. (3a596d852)	CCTBX Commit via DLS Jenkins	Fri, 28 Apr 2017 19:10:38 -0700	768 lines
[git/cctbx] master: relaxing threshold for SS (b7384e063)	CCTBX Commit via DLS Jenkins	Fri, 28 Apr 2017 13:55:17 -0700	121 lines
[git/cctbx] master: Partial bugfix in adding new bond to GRM with test. (e00d0f4d4)	CCTBX Commit via DLS Jenkins	Fri, 28 Apr 2017 12:36:51 -0700	210 lines
[git/cctbx] master: suppressing excessive output in MI (06bd5b0a9)	CCTBX Commit via DLS Jenkins	Fri, 28 Apr 2017 12:36:51 -0700	231 lines
[git/cctbx] master: Shift origin if needed (16bc22f24)	CCTBX Commit via DLS Jenkins	Fri, 28 Apr 2017 12:17:12 -0700	104 lines
[git/cctbx] master: Bug fix: d_min -> d_mid (95147005e)	CCTBX Commit via DLS Jenkins	Fri, 28 Apr 2017 11:16:25 -0700	72 lines
[git/cctbx] master: Ensure repetitive calls result in same results (d1ee93401)	CCTBX Commit via DLS Jenkins	Fri, 28 Apr 2017 11:12:26 -0700	216 lines
[git/cctbx] master: Add option to use smooth mask to mask out region outside the molecule for d_fsc calculation using half-maps (1dd7a4fd0)	CCTBX Commit via DLS Jenkins	Fri, 28 Apr 2017 09:32:45 -0700	190 lines
[git/cctbx] master: Add exception hierarchy so that specific errors can be caught. Closes #17 as errors can now be handled upstream. (631c201c9)	CCTBX Commit via DLS Jenkins	Fri, 28 Apr 2017 10:25:39 +0100	116 lines
[git/cctbx] master: some cleanup of output (3306b6e53)	CCTBX Commit via DLS Jenkins	Thu, 27 Apr 2017 17:42:07 -0700	549 lines
[git/cctbx] master: remove some debut printing (faff6b702)	CCTBX Commit via DLS Jenkins	Thu, 27 Apr 2017 17:42:07 -0700	95 lines
[git/cctbx] master: Separate map smoothening and mask calculation. Add more flexibility to mask calculation (external radii, etc). (076ae906b)	CCTBX Commit via DLS Jenkins	Thu, 27 Apr 2017 16:56:28 -0700	547 lines
[git/cctbx] master: Only find new images (d4c6f163a)	CCTBX Commit via DLS Jenkins	Thu, 27 Apr 2017 16:03:35 -0700	323 lines
[git/cctbx] master: Add smooth mask (e246bc745)	CCTBX Commit via DLS Jenkins	Thu, 27 Apr 2017 13:15:13 -0700	417 lines
[git/cctbx] master: Fix printout (a9e2295d4)	CCTBX Commit via DLS Jenkins	Thu, 27 Apr 2017 13:32:59 -0600	100 lines
[git/cctbx] master: small fixes (d36db6677)	CCTBX Commit via DLS Jenkins	Thu, 27 Apr 2017 11:17:38 -0700	102 lines
[git/cctbx] master: stub for ss_idealization CL just for testing (5c525edaf)	CCTBX Commit via DLS Jenkins	Thu, 27 Apr 2017 11:01:20 -0700	125 lines
[git/cctbx] master: Make failure type consistent with the other one (1c147043c)	CCTBX Commit via DLS Jenkins	Thu, 27 Apr 2017 10:39:09 -0700	80 lines
[git/cctbx] master: SSV: case when annotation present, no protein (1c2x) (aec622e43)	CCTBX Commit via DLS Jenkins	Thu, 27 Apr 2017 10:39:09 -0700	81 lines
[git/cctbx] master: Updates to image monitor (2a9e0eaf4)	CCTBX Commit via DLS Jenkins	Wed, 26 Apr 2017 18:08:59 -0700	588 lines
[git/cctbx] master: Move deep copies into the offending function, add a note. (c710894c6)	CCTBX Commit via DLS Jenkins	Wed, 26 Apr 2017 15:57:18 -0700	118 lines
[git/cctbx] master: Merge branch 'master' of github.com:cctbx/cctbx_project (1a8b889f3)	CCTBX Commit via DLS Jenkins	Wed, 26 Apr 2017 15:09:19 -0700	60 lines
[git/cctbx] master: Ringer fix, mtriage fix for rare corner cases. (e668067c5)	CCTBX Commit via DLS Jenkins	Wed, 26 Apr 2017 15:09:13 -0700	406 lines
[git/cctbx] master: New utility function safe_div and some safeguaring in ss_validation (79c52a87f)	CCTBX Commit via DLS Jenkins	Wed, 26 Apr 2017 15:02:48 -0700	330 lines
[git/cctbx] master: exclude amber.python from creation (8dafdbd55)	CCTBX Commit via DLS Jenkins	Wed, 26 Apr 2017 13:31:39 -0700	92 lines
[git/cctbx] master: assortment of bug fixes (a2ddfb61a)	CCTBX Commit via DLS Jenkins	Wed, 26 Apr 2017 12:56:00 -0700	177 lines
[git/cctbx] master: add show method (bb947fb8a)	CCTBX Commit via DLS Jenkins	Wed, 26 Apr 2017 10:29:01 -0700	116 lines
[git/cctbx] master: enabling access to the defaults... (409e019fb)	CCTBX Commit via DLS Jenkins	Wed, 26 Apr 2017 10:29:24 +0100	87 lines
Jenkins 5b cctbx MacOS build 1207 Fixed	Jenkins Build Server (Diamond)	Wed, 26 Apr 2017 08:30:12 +0100	37 lines
Jenkins 5b cctbx MacOS build 1206 Failure	Jenkins Build Server (Diamond)	Wed, 26 Apr 2017 04:54:48 +0100	126 lines
[git/cctbx] master: Extreme minimization (515c914db)	CCTBX Commit via DLS Jenkins	Tue, 25 Apr 2017 17:21:07 -0700	302 lines
[git/cctbx] master: proper cutoff for CCD termination (749414bc8)	CCTBX Commit via DLS Jenkins	Tue, 25 Apr 2017 17:21:07 -0700	75 lines
[git/cctbx] master: output file before minimization to study side-chain clashes of fixed residues (10bf7304f)	CCTBX Commit via DLS Jenkins	Tue, 25 Apr 2017 17:21:07 -0700	85 lines
[git/cctbx] master: MI:Minimization: 5 cycles without improvemenet-terminate (c5cf63a78)	CCTBX Commit via DLS Jenkins	Tue, 25 Apr 2017 17:21:07 -0700	175 lines
[git/cctbx] master: fixing omega recounting was missing (d1fa188f0)	CCTBX Commit via DLS Jenkins	Tue, 25 Apr 2017 17:21:07 -0700	98 lines
[git/cctbx] master: Real-time diffraction monitor (446836806)	CCTBX Commit via DLS Jenkins	Tue, 25 Apr 2017 17:12:45 -0700	2347 lines
[git/cctbx] master: Fixing wrong tool name in help (9795192d5)	CCTBX Commit via DLS Jenkins	Tue, 25 Apr 2017 17:06:48 -0700	77 lines
[git/cctbx] master: Make discard_if_worse=False default (338367667)	CCTBX Commit via DLS Jenkins	Tue, 25 Apr 2017 14:46:10 -0600	77 lines
[git/cctbx] master: more cleaning, fix on_slope does not have to be such new fsc=0 (70cec0872)	CCTBX Commit via DLS Jenkins	Tue, 25 Apr 2017 11:54:50 -0700	250 lines
[git/cctbx] master: Allow verbose output to see CC vs resolution (899ac430f)	CCTBX Commit via DLS Jenkins	Tue, 25 Apr 2017 12:53:56 -0600	260 lines
[git/cctbx] master: Fix serious bug introduced this week in segment_and_split_map where wrong symmetry was used (a16e9d6f0)	CCTBX Commit via DLS Jenkins	Tue, 25 Apr 2017 09:59:45 -0600	164 lines
[git/cctbx] master: Use consistent region_weight of 40 (2262570c3)	CCTBX Commit via DLS Jenkins	Tue, 25 Apr 2017 08:08:32 -0600	113 lines
[git/cctbx] master: dxtbx: support both SmarGon and mini-Kappa gonoimeter shadow masks in I04 format class (0f0a5283f)	CCTBX Commit via DLS Jenkins	Tue, 25 Apr 2017 10:39:07 +0100	801 lines
[git/cctbx] master: make slices thinner (217f63659)	CCTBX Commit via DLS Jenkins	Mon, 24 Apr 2017 23:16:52 -0700	198 lines
[git/cctbx] master: Revert max_like sign error change from Feb 2017 (a44c5b6f5)	CCTBX Commit via DLS Jenkins	Mon, 24 Apr 2017 16:46:44 -0700	85 lines
[git/cctbx] master: Hook up multiprocessing at the dials.combine_experiments stage. (e6fde5059)	CCTBX Commit via DLS Jenkins	Mon, 24 Apr 2017 15:10:31 -0700	361 lines
[git/cctbx] master: Bugfix (b4bb39bd9)	CCTBX Commit via DLS Jenkins	Mon, 24 Apr 2017 15:10:31 -0700	72 lines
[git/cctbx] master: Bugfix: return empty list of clusters when only one xtal provided. (87a850f73)	CCTBX Commit via DLS Jenkins	Mon, 24 Apr 2017 15:10:31 -0700	161 lines
[git/cctbx] master: Fix printout to sys.stdout (895644ecb)	CCTBX Commit via DLS Jenkins	Mon, 24 Apr 2017 14:45:50 -0600	108 lines
[git/cctbx] master: more refactoring (ae3539c71)	CCTBX Commit via DLS Jenkins	Mon, 24 Apr 2017 13:23:24 -0700	345 lines
[git/cctbx] master: Getting it closer to be ready for phenix.mtriage (2b8adc71e)	CCTBX Commit via DLS Jenkins	Mon, 24 Apr 2017 11:32:46 -0700	656 lines
[git/cctbx] master: Make region_weight same in map_to_model and auto_sharpen (20) (ca74bf494)	CCTBX Commit via DLS Jenkins	Mon, 24 Apr 2017 08:19:43 -0600	127 lines
[git/cctbx] master: require ncs-related points to be inside box (078d28468)	CCTBX Commit via DLS Jenkins	Mon, 24 Apr 2017 06:09:25 -0600	148 lines
[git/cctbx] master: Make sure we use correct ncs copy (1c120a25d)	CCTBX Commit via DLS Jenkins	Sun, 23 Apr 2017 20:21:17 -0600	147 lines
[git/cctbx] master: some cleanup, still dirty (ba3e78784)	CCTBX Commit via DLS Jenkins	Sun, 23 Apr 2017 18:49:35 -0700	319 lines
[git/cctbx] master: fix some of broken tests (8f6f60fcf)	CCTBX Commit via DLS Jenkins	Sun, 23 Apr 2017 18:11:15 -0700	243 lines
[git/cctbx] master: add crystal_symmetry (was missing) (37ee12ff8)	CCTBX Commit via DLS Jenkins	Sun, 23 Apr 2017 17:43:41 -0700	643 lines
[git/cctbx] master: Snapshot of a dirty code in active development. (dbf1d211b)	CCTBX Commit via DLS Jenkins	Sun, 23 Apr 2017 17:08:54 -0700	335 lines
[git/cctbx] master: Add FSC and resolution from FSC calculation. Centralize structure_factor_box_from_map, shift_origin_if_needed. (43663be7b)	CCTBX Commit via DLS Jenkins	Sun, 23 Apr 2017 17:08:53 -0700	654 lines
[git/cctbx] master: Add FSC and resolution from FSC calculation. Centralize structure_factor_box_from_map, shift_origin_if_needed. (fe5ef477e)	CCTBX Commit via DLS Jenkins	Sun, 23 Apr 2017 17:08:53 -0700	978 lines
[git/cctbx] master: replace xray_structure with sites_cart in shift_origin_if_needed (b6ef5df65)	CCTBX Commit via DLS Jenkins	Sun, 23 Apr 2017 17:08:53 -0700	391 lines
[git/cctbx] master: Update auto_Sharpen to allow control of auto_sharpen=True discard_if_worse=False (87dcda31a)	CCTBX Commit via DLS Jenkins	Sun, 23 Apr 2017 18:00:09 -0600	1406 lines
[git/cctbx] master: More OOP for map_model_cc. (0bfb69019)	CCTBX Commit via DLS Jenkins	Sun, 23 Apr 2017 13:18:10 -0700	675 lines
[git/cctbx] master: Use default local_sharpening=False (93ed3671d)	CCTBX Commit via DLS Jenkins	Sat, 22 Apr 2017 14:49:56 -0600	77 lines
[git/cctbx] master: cosmetic fixes (686042171)	CCTBX Commit via DLS Jenkins	Sat, 22 Apr 2017 13:25:31 -0700	124 lines
[git/cctbx] master: Refactor code to decouple io/cli/library functions. Combined results as one object. Improve tests. (638d8fa37)	CCTBX Commit via DLS Jenkins	Sat, 22 Apr 2017 13:06:31 -0700	959 lines
[git/cctbx] master: move to a better place cctbx/maptbx/__init__.py (52d7c6657)	CCTBX Commit via DLS Jenkins	Sat, 22 Apr 2017 13:02:12 -0700	110 lines
[git/cctbx] master: Putative coordinate fixes for Eiger and NeXus data (b78a09477)	CCTBX Commit via DLS Jenkins	Fri, 21 Apr 2017 17:12:15 -0700	203 lines
[git/cctbx] master: Account for sign flip in iotbx Eiger implementation. (e793bf76e)	CCTBX Commit via DLS Jenkins	Fri, 21 Apr 2017 17:12:15 -0700	79 lines
[git/cctbx] master: Turn on local sharpening as default (ac797efd2)	CCTBX Commit via DLS Jenkins	Fri, 21 Apr 2017 17:25:20 -0600	78 lines
[git/cctbx] master: allow case with only one region in sharpening (bebada4ff)	CCTBX Commit via DLS Jenkins	Fri, 21 Apr 2017 17:06:26 -0600	98 lines
[git/cctbx] master: Refactored FormatCBFMiniPilatus, moving methods that handle generic minicbf to the parent class, so that simulated images can be generated without having to follow the Pilatus detector sizes and tiling arrangements. Same comments for file writing with as_file(). (c14f4ca78)	CCTBX Commit via DLS Jenkins	Fri, 21 Apr 2017 15:51:29 -0700	1357 lines
[git/cctbx] master: quick test for a function added to model_statistics. (bb927f534)	CCTBX Commit via DLS Jenkins	Fri, 21 Apr 2017 14:43:02 -0700	75 lines
[git/cctbx] master: Use c-beta outlier percentage in phenix.real_space_refine (e8ac53cac)	CCTBX Commit via DLS Jenkins	Fri, 21 Apr 2017 14:30:22 -0700	100 lines
[git/cctbx] master: Process Auto -> int for run2 (23f424e4e)	CCTBX Commit via DLS Jenkins	Fri, 21 Apr 2017 14:29:48 -0700	100 lines
[git/cctbx] master: Make cbeta percent available in model_statistics, use in MI (d43760b7b)	CCTBX Commit via DLS Jenkins	Fri, 21 Apr 2017 13:59:49 -0700	111 lines
[git/cctbx] master: Don't do CCD, just evaluate different starting conformations in case when some of the atoms for anchor are not available. This mostly happens at the end of chain (no further residue available). (31b3bc96d)	CCTBX Commit via DLS Jenkins	Fri, 21 Apr 2017 13:30:05 -0700	312 lines
[git/cctbx] master: Automatic number of refinement cycles (1212d5a46)	CCTBX Commit via DLS Jenkins	Fri, 21 Apr 2017 13:30:05 -0700	483 lines
[git/cctbx] master: Output molprobity after each minimization step (31cee8ebe)	CCTBX Commit via DLS Jenkins	Fri, 21 Apr 2017 13:30:05 -0700	113 lines
[git/cctbx] master: various fixes and safeguards (ef4897ce9)	CCTBX Commit via DLS Jenkins	Fri, 21 Apr 2017 13:30:05 -0700	335 lines
[git/cctbx] master: added functions for internal access of summary statistics to cbetadev (34448e2f7)	CCTBX Commit via DLS Jenkins	Fri, 21 Apr 2017 16:11:13 -0400	242 lines
[git/cctbx] master: Allow adjustment of smoothing radius and writing out/in of local sharpening maps (9bf78286c)	CCTBX Commit via DLS Jenkins	Fri, 21 Apr 2017 13:58:51 -0600	1080 lines
[git/cctbx] master: Some updates to Sphinx documentation about installation and GitHub (9d5ff50f8)	CCTBX Commit via DLS Jenkins	Fri, 21 Apr 2017 11:58:58 -0700	534 lines
[git/cctbx] master: Bugfix (875b6c3cd)	CCTBX Commit via DLS Jenkins	Fri, 21 Apr 2017 10:51:21 -0700	82 lines
[git/cctbx] master: No detectorbase for FormatCBFMultiTile (f570d3c7d)	CCTBX Commit via DLS Jenkins	Fri, 21 Apr 2017 10:38:29 -0700	75 lines
[git/cctbx] master: Use data from original hdf5 master handle to avoid opening lots of file handles (d289b13f7)	CCTBX Commit via DLS Jenkins	Fri, 21 Apr 2017 15:01:36 +0100	115 lines
[git/cctbx] master: remove broken URL reference (Is fetch_dependencies actually used?) (a7c3b61c4)	CCTBX Commit via DLS Jenkins	Fri, 21 Apr 2017 14:14:46 +0100	95 lines
[git/cctbx] master: Update HDF5 library and h5py. Closes #29 (2ece64799)	CCTBX Commit via DLS Jenkins	Fri, 21 Apr 2017 14:14:45 +0100	232 lines
[git/cctbx] master: Removed check for scan being same length as images in imageset as this causes import to fail if we want to extend the image range (4d84d0fbe)	CCTBX Commit via DLS Jenkins	Fri, 21 Apr 2017 13:57:11 +0100	80 lines
[git/cctbx] master: Moved format class to dials regression (68b73142b)	CCTBX Commit via DLS Jenkins	Fri, 21 Apr 2017 08:55:05 +0100	533 lines
[git/cctbx] master: Moved format class to dials_regression (9cc1932e8)	CCTBX Commit via DLS Jenkins	Fri, 21 Apr 2017 08:54:58 +0100	398 lines
[git/cctbx] master: Implement local sharpening (87c60466c)	CCTBX Commit via DLS Jenkins	Thu, 20 Apr 2017 22:06:22 -0600	289 lines
[git/cctbx] master: minor edits for plan_sad_experiment (raise sorry if solvent fraction more than one); continue introduction of local sharpening in auto_sharpen (still in progress) (1be0c746a)	CCTBX Commit via DLS Jenkins	Thu, 20 Apr 2017 20:51:41 -0600	823 lines
[git/cctbx] master: Remove obsolete file - no longer used. (6e8d77216)	CCTBX Commit via DLS Jenkins	Thu, 20 Apr 2017 16:00:54 -0700	492 lines
[git/cctbx] master: Minor clean-up (18462741a)	CCTBX Commit via DLS Jenkins	Thu, 20 Apr 2017 15:59:07 -0700	98 lines
[git/cctbx] master: Handle multipanlel NeXus detectors in MaskFactory. (6bc35ee90)	CCTBX Commit via DLS Jenkins	Thu, 20 Apr 2017 15:47:34 -0700	357 lines
[git/cctbx] master: Turn off FormatHDF5Nexus. This was implemented to an older example and has been superceeded by FormatNexus (0e10fd5b8)	CCTBX Commit via DLS Jenkins	Thu, 20 Apr 2017 15:47:34 -0700	75 lines
[git/cctbx] master: Make several NeXus fields optional that might not be present in NeXus file. (21cbb6064)	CCTBX Commit via DLS Jenkins	Thu, 20 Apr 2017 15:47:34 -0700	228 lines
[git/cctbx] master: Handle hierarchical detectors from a NXdetector_group. Work in progress. (92d96caf6)	CCTBX Commit via DLS Jenkins	Thu, 20 Apr 2017 15:47:34 -0700	667 lines
[git/cctbx] master: Add NXdetector_group class and support for picking it up in NXinstrument (d9ea4c08b)	CCTBX Commit via DLS Jenkins	Thu, 20 Apr 2017 15:47:34 -0700	184 lines
[git/cctbx] master: Add indexing for the Beam model in NeXus to allow variable wavelengths in an array, one for each image (df0dc09df)	CCTBX Commit via DLS Jenkins	Thu, 20 Apr 2017 15:47:34 -0700	156 lines
[git/cctbx] master: Pick up hierarchical detector in NeXus by using DetectorFactoryFromGroup. (f1fcfe75f)	CCTBX Commit via DLS Jenkins	Thu, 20 Apr 2017 15:47:34 -0700	181 lines
[git/cctbx] master: Code to read multi-panel pixel data from NeXus files, using the data_origin and data_size fields in NXdetector_module (3a77520bc)	CCTBX Commit via DLS Jenkins	Thu, 20 Apr 2017 15:47:34 -0700	416 lines
[git/cctbx] master: Multipanel detectors in NeXus: change of basis to convert from NeXus to IUCr/ImageCIF convention (0ca29f6e6)	CCTBX Commit via DLS Jenkins	Thu, 20 Apr 2017 15:47:34 -0700	167 lines
[git/cctbx] master: Add FormatNexusStill to FormatNexus (453902c39)	CCTBX Commit via DLS Jenkins	Thu, 20 Apr 2017 15:47:34 -0700	220 lines
[git/cctbx] master: Handle missing type in NXdetector. Handle no goniometer case. (018fab65e)	CCTBX Commit via DLS Jenkins	Thu, 20 Apr 2017 15:47:34 -0700	113 lines
[git/cctbx] master: Bugfix (8ab4d0949)	CCTBX Commit via DLS Jenkins	Thu, 20 Apr 2017 15:47:34 -0700	73 lines
[git/cctbx] master: NeXus changes (a4bd0af31)	CCTBX Commit via DLS Jenkins	Thu, 20 Apr 2017 15:47:34 -0700	189 lines
[git/cctbx] master: Multipanel NeXus: add missing values (trusted range, thickness, material, mu and pixel to mm strategy) (480c74395)	CCTBX Commit via DLS Jenkins	Thu, 20 Apr 2017 15:47:34 -0700	247 lines
[git/cctbx] master: add more tests (793a82206)	CCTBX Commit via DLS Jenkins	Thu, 20 Apr 2017 15:07:22 -0700	458 lines
[git/cctbx] master: clean up code (ec63d5960)	CCTBX Commit via DLS Jenkins	Thu, 20 Apr 2017 15:07:11 -0700	284 lines
[git/cctbx] master: Fix to allow 'understand' check from command line (4271cdb4a)	CCTBX Commit via DLS Jenkins	Thu, 20 Apr 2017 09:47:30 +0100	70 lines
[git/cctbx] master: Add exclusions borrowed from FormatSMVADSC otherwise this Format claims to understand too much. @jmp1985 I still think there is a danger of this Format 'understanding' images intended for the FormatSMVADSC class, from which this does not derive. (26a676218)	CCTBX Commit via DLS Jenkins	Thu, 20 Apr 2017 09:47:30 +0100	93 lines
[git/cctbx] master: Adjust test given fix to cbflib in https://github.com/yayahjb/cbflib/issues/6 (6fe419dc8)	CCTBX Commit via DLS Jenkins	Thu, 20 Apr 2017 09:40:26 +0100	83 lines
[git/cctbx] master: Update auto_sharpen to partly use local sharpening (729e94889)	CCTBX Commit via DLS Jenkins	Wed, 19 Apr 2017 17:41:03 -0600	2019 lines
[git/cctbx] master: Necessary substitutions for shifter (b12df0a34)	CCTBX Commit via DLS Jenkins	Wed, 19 Apr 2017 15:49:14 -0700	207 lines
[git/cctbx] master: Move and refactor generalized multiprocessing. Add custom and shifter support. (93a268abb)	CCTBX Commit via DLS Jenkins	Wed, 19 Apr 2017 15:32:05 -0700	1840 lines
[git/cctbx] master: add tests for modified version of set_box (14929daf7)	CCTBX Commit via DLS Jenkins	Wed, 19 Apr 2017 12:05:34 -0700	168 lines
[git/cctbx] master: modify set_box to be able to use boxes across border of unit cell (6962a4fc9)	CCTBX Commit via DLS Jenkins	Wed, 19 Apr 2017 12:05:34 -0700	286 lines
[git/cctbx] master: Clean clutter. Developers please use libtbx.add_from_future_import_division if indicated by libtbx.find_clutter. (edd595640)	CCTBX Commit via DLS Jenkins	Wed, 19 Apr 2017 10:09:06 -0700	171 lines
[git/cctbx] master: dxtbx: bug fix for instantiating dxtbx objects from a FullCBF still shot (fa294691a)	CCTBX Commit via DLS Jenkins	Wed, 19 Apr 2017 15:42:31 +0100	202 lines
[git/cctbx] master: more informative error message (51bedf90b)	CCTBX Commit via DLS Jenkins	Wed, 19 Apr 2017 14:23:27 +0100	77 lines
[git/cctbx] master: Set base directory for tmpdir fixtures in py.test tests (db7244cf2)	CCTBX Commit via DLS Jenkins	Wed, 19 Apr 2017 11:35:54 +0100	79 lines
[git/cctbx] master: Added a function to check an array of angles (e457b2a97)	CCTBX Commit via DLS Jenkins	Wed, 19 Apr 2017 09:25:26 +0100	120 lines
[git/cctbx] master: Temporary output pdb (d5843c961)	CCTBX Commit via DLS Jenkins	Tue, 18 Apr 2017 15:18:31 -0700	81 lines
[git/cctbx] master: checking for none (7708a2615)	CCTBX Commit via DLS Jenkins	Tue, 18 Apr 2017 15:18:31 -0700	80 lines
[git/cctbx] master: Checking omega to decide if ccd is needed (a573ab1a4)	CCTBX Commit via DLS Jenkins	Tue, 18 Apr 2017 15:18:31 -0700	107 lines
[git/cctbx] master: Running from_ca method when ksdssp failed. Adjusted test. (af2e996e1)	CCTBX Commit via DLS Jenkins	Tue, 18 Apr 2017 15:18:31 -0700	176 lines
[git/cctbx] master: MI: output cablam validation, don't output debug file (1629a6aff)	CCTBX Commit via DLS Jenkins	Tue, 18 Apr 2017 15:18:31 -0700	158 lines
[git/cctbx] master: GUI: added system path for icons on linux; fixes gtk warning issues when running Phenix GUI natively on linux desktop; running GUI over X11 still seems to show warnings (143cfea77)	CCTBX Commit via DLS Jenkins	Tue, 18 Apr 2017 15:05:29 -0700	83 lines
[git/cctbx] master: Fail early if on Mac and zlib.h not in default location. Closes #26 (daea6f6c5)	CCTBX Commit via DLS Jenkins	Tue, 18 Apr 2017 20:30:25 +0100	81 lines
[git/cctbx] master: update auto_sharpening with aniso correction (d70c9871c)	CCTBX Commit via DLS Jenkins	Tue, 18 Apr 2017 12:51:32 -0600	544 lines
[git/cctbx] master: Need to remove afitt and amber dirs earlier (d0a03539c)	CCTBX Commit via DLS Jenkins	Tue, 18 Apr 2017 10:18:43 -0700	125 lines
[git/cctbx] master: dxtbx/format/FormatCBFFullPilatusDLS6MSN100.py: include more points in gonio shadow model than just corners of square (cf21278b4)	CCTBX Commit via DLS Jenkins	Tue, 18 Apr 2017 11:08:34 +0100	134 lines
[git/cctbx] master: Set maximum gzip compression level for installers. (Although this should be replaced by xz or bzip2 really) (fb341e053)	CCTBX Commit via DLS Jenkins	Tue, 18 Apr 2017 08:29:58 +0100	92 lines
[git/cctbx] master: Update map shapening to apply aniso correction in case where model and half-map is not used (16b2e7cff)	CCTBX Commit via DLS Jenkins	Mon, 17 Apr 2017 21:06:52 -0600	1273 lines
[git/cctbx] master: Not using GRM for statistics because it is not necessary for now. (b12fecf6e)	CCTBX Commit via DLS Jenkins	Mon, 17 Apr 2017 16:33:55 -0700	90 lines
[git/cctbx] master: making percentage of twisted and cis available in model_statistics (8c75e9b5e)	CCTBX Commit via DLS Jenkins	Mon, 17 Apr 2017 15:57:40 -0700	73 lines
[git/cctbx] master: MI: Turning off hydrogens for now (85b6ccf38)	CCTBX Commit via DLS Jenkins	Mon, 17 Apr 2017 15:57:40 -0700	73 lines
[git/cctbx] master: MI: Making add hydrogens work when NCS present. First attempt. (25b4dfcad)	CCTBX Commit via DLS Jenkins	Mon, 17 Apr 2017 15:57:40 -0700	502 lines
[git/cctbx] master: couple of safeguards (55560b9c3)	CCTBX Commit via DLS Jenkins	Mon, 17 Apr 2017 15:55:54 -0700	141 lines
[git/cctbx] master: Initial addition of hydrogens, does not work for NCS (a43ed8d10)	CCTBX Commit via DLS Jenkins	Mon, 17 Apr 2017 15:55:54 -0700	275 lines
[git/cctbx] master: Corner case when not all backbone atoms are present (87810f284)	CCTBX Commit via DLS Jenkins	Mon, 17 Apr 2017 15:55:54 -0700	146 lines
[git/cctbx] master: Corner case when not all backbone atoms are present (5de6ab577)	CCTBX Commit via DLS Jenkins	Mon, 17 Apr 2017 15:55:54 -0700	96 lines
[git/cctbx] master: Using correct way of generating residue number in peak_holes. (9f14f427c)	CCTBX Commit via DLS Jenkins	Mon, 17 Apr 2017 15:41:28 -0700	92 lines
[git/cctbx] master: Modifying model_statistics to make twisties available (c4a0d2951)	CCTBX Commit via DLS Jenkins	Mon, 17 Apr 2017 15:41:19 -0700	359 lines
[git/cctbx] master: Swap priority of HDF5 plugin path such that our HDF5 plugins take priority over the users. (b063e825e)	CCTBX Commit via DLS Jenkins	Mon, 17 Apr 2017 15:12:57 -0700	82 lines
[git/cctbx] master: remove all amber directories (58ea43dd9)	CCTBX Commit via DLS Jenkins	Mon, 17 Apr 2017 14:43:39 -0700	82 lines
[git/cctbx] master: new download Amber script (338d1e4a9)	CCTBX Commit via DLS Jenkins	Mon, 17 Apr 2017 13:56:29 -0700	78 lines
[git/cctbx] master: Update sharpening to allow half-dataset sharpening (3c1cf5c33)	CCTBX Commit via DLS Jenkins	Mon, 17 Apr 2017 13:25:18 -0600	2589 lines
[git/cctbx] master: residual fix-ups after switching to new CC (e01da3f4f)	CCTBX Commit via DLS Jenkins	Sun, 16 Apr 2017 20:20:39 -0700	111 lines
[git/cctbx] master: Use resolution dependent radius for CC. Report CCmask, CCpeak, CCvolume. (7b5a3c0fa)	CCTBX Commit via DLS Jenkins	Sun, 16 Apr 2017 19:56:34 -0700	835 lines
[git/cctbx] master: Cleaner and less buggish (a47774ccf)	CCTBX Commit via DLS Jenkins	Sun, 16 Apr 2017 14:02:53 -0700	133 lines
[git/cctbx] master: Allow ncs operators for helical symmetry to start/end at identity (553b69616)	CCTBX Commit via DLS Jenkins	Sat, 15 Apr 2017 10:51:24 -0600	423 lines
[git/cctbx] master: DIALS additions, run recovery and assorted bugfixes (2831a1bfc)	CCTBX Commit via DLS Jenkins	Fri, 14 Apr 2017 16:18:13 -0700	2001 lines
[git/cctbx] master: Remove unused parameters. Define expert_level. (b1d3abeaa)	CCTBX Commit via DLS Jenkins	Fri, 14 Apr 2017 15:34:49 -0700	289 lines
[git/cctbx] master: weight in MI (1312c6da7)	CCTBX Commit via DLS Jenkins	Fri, 14 Apr 2017 15:34:49 -0700	77 lines
[git/cctbx] master: Fixing omega in MI (2ab41186b)	CCTBX Commit via DLS Jenkins	Fri, 14 Apr 2017 15:34:49 -0700	843 lines
[git/cctbx] master: re-enable overall scale update (edb0d402e)	CCTBX Commit via DLS Jenkins	Fri, 14 Apr 2017 15:23:04 -0700	116 lines
[git/cctbx] master: bug fix: init values are shifts not actual bs (1cbc2223d)	CCTBX Commit via DLS Jenkins	Fri, 14 Apr 2017 14:05:48 -0700	90 lines
[git/cctbx] master: Allow masking of map in auto_sharpen and segment_and_split (5135500c4)	CCTBX Commit via DLS Jenkins	Fri, 14 Apr 2017 14:48:43 -0600	366 lines
[git/cctbx] master: Improved B-factor refinement against cryo-EM map. (6e1b88523)	CCTBX Commit via DLS Jenkins	Fri, 14 Apr 2017 13:29:38 -0700	316 lines
[git/cctbx] master: Allow user to set value outside mask to mean inside mask in map_box (376f68c3d)	CCTBX Commit via DLS Jenkins	Fri, 14 Apr 2017 14:17:27 -0600	196 lines
[git/cctbx] master: minor printout changes (1696abe30)	CCTBX Commit via DLS Jenkins	Fri, 14 Apr 2017 13:45:26 -0600	85 lines
[git/cctbx] master: Use masked map in model-map CC in auto_sharpening (a90f1af2c)	CCTBX Commit via DLS Jenkins	Fri, 14 Apr 2017 13:41:05 -0600	96 lines
[git/cctbx] master: Fix box_map use in segment_and_split_map (7023f5d29)	CCTBX Commit via DLS Jenkins	Fri, 14 Apr 2017 13:16:20 -0600	141 lines
[git/cctbx] master: Fixes to the external plugins testing (e1a2d52ce)	CCTBX Commit via DLS Jenkins	Fri, 14 Apr 2017 11:09:02 -0700	407 lines
[git/cctbx] master: Allow definition of center of box for sharpening (a9959122d)	CCTBX Commit via DLS Jenkins	Thu, 13 Apr 2017 13:13:43 -0600	390 lines
Jenkins 5b cctbx MacOS build 1129 Fixed	Jenkins Build Server (Diamond)	Thu, 13 Apr 2017 19:15:10 +0100	37 lines
[git/cctbx] master: Allow pdb_inp to come in call to auto_sharpen (001854326)	CCTBX Commit via DLS Jenkins	Thu, 13 Apr 2017 11:58:42 -0600	440 lines
Jenkins 5b cctbx MacOS build 1128 Unstable	Jenkins Build Server (Diamond)	Thu, 13 Apr 2017 18:03:48 +0100	36 lines
[git/cctbx] master: 10x faster this way (1f42f6434)	CCTBX Commit via DLS Jenkins	Thu, 13 Apr 2017 09:46:10 -0700	80 lines
[git/cctbx] master: Note for others and more accurate rotation (78a252dc4)	CCTBX Commit via DLS Jenkins	Thu, 13 Apr 2017 09:29:55 -0700	107 lines
[git/cctbx] master: Added flux and transmission to beam model and set it in FormatCBFMini* classes. If this is present in other format classes, we can also set it there (eab780825)	CCTBX Commit via DLS Jenkins	Thu, 13 Apr 2017 15:38:25 +0100	886 lines
[git/cctbx] master: bugfix (4b92e4cfa)	CCTBX Commit via DLS Jenkins	Thu, 13 Apr 2017 07:27:34 -0700	97 lines
[git/cctbx] master: Move to better place, add doc string, rename (e464c1d58)	CCTBX Commit via DLS Jenkins	Thu, 13 Apr 2017 07:12:37 -0700	354 lines
Jenkins 5a cctbx Tests build 4170 Fixed	Jenkins Build Server (Diamond)	Thu, 13 Apr 2017 15:11:34 +0100	38 lines
[git/cctbx] master: fix typo (7f8d67db6)	CCTBX Commit via DLS Jenkins	Thu, 13 Apr 2017 07:05:22 -0700	75 lines
Jenkins 5a cctbx Tests build 4169 Unstable	Jenkins Build Server (Diamond)	Thu, 13 Apr 2017 14:37:32 +0100	100 lines
[git/cctbx] master: stop gap for poor ss based selections (de07b841e)	CCTBX Commit via DLS Jenkins	Thu, 13 Apr 2017 06:31:08 -0700	141 lines
[git/cctbx] master: stop gap for poor ss based selections (e626d9a43)	CCTBX Commit via DLS Jenkins	Thu, 13 Apr 2017 06:31:08 -0700	278 lines
[git/cctbx] master: dxtbx: fix dynamic shadowing for DLS I04 SmarGon (69260305f)	CCTBX Commit via DLS Jenkins	Thu, 13 Apr 2017 12:04:22 +0100	171 lines
[git/cctbx] master: Fixed bug in gain and allow gain set from panel.get_gain (85951961a)	CCTBX Commit via DLS Jenkins	Thu, 13 Apr 2017 11:35:22 +0100	96 lines
Jenkins 5b cctbx MacOS build 1121 Fixed	Jenkins Build Server (Diamond)	Thu, 13 Apr 2017 03:27:04 +0100	37 lines
Jenkins 5a cctbx Tests build 4165 Fixed	Jenkins Build Server (Diamond)	Thu, 13 Apr 2017 01:01:25 +0100	37 lines
[git/cctbx] master: Re-enabled old tests, but check against Boost version first (6183ad6f0)	CCTBX Commit via DLS Jenkins	Wed, 12 Apr 2017 16:44:34 -0700	338 lines
Jenkins 5a cctbx Tests build 4164 Still Unstable	Jenkins Build Server (Diamond)	Wed, 12 Apr 2017 22:36:30 +0100	56 lines
[git/cctbx] master: Reusing asc, ideal_res_dict (aca57cf1e)	CCTBX Commit via DLS Jenkins	Wed, 12 Apr 2017 14:30:04 -0700	172 lines
[git/cctbx] master: Implementation of dihedral angle in Python. 2.5x slower than cpp (cc1ae70de)	CCTBX Commit via DLS Jenkins	Wed, 12 Apr 2017 14:30:04 -0700	195 lines
Jenkins 5a cctbx Tests build 4163 Still Unstable	Jenkins Build Server (Diamond)	Wed, 12 Apr 2017 21:54:42 +0100	52 lines
[git/cctbx] master: Remove raw pointers. Developers, please do not use "new" and "delete" to manage heap memory in C++. Use standard library containers with built-in memory management. (4f1a664e8)	CCTBX Commit via DLS Jenkins	Wed, 12 Apr 2017 13:48:01 -0700	245 lines
Jenkins 5b cctbx MacOS build 1120 Unstable	Jenkins Build Server (Diamond)	Wed, 12 Apr 2017 20:11:56 +0100	49 lines
Jenkins 5a cctbx Tests build 4162 Unstable	Jenkins Build Server (Diamond)	Wed, 12 Apr 2017 20:01:30 +0100	49 lines
Jenkins 5a cctbx Tests build 4162 Unstable	Jenkins Build Server (Diamond)	Wed, 12 Apr 2017 20:01:30 +0100	98 lines
[git/cctbx] master: Updated random numbers in tests for upgrade to Boost 1.56 (18b7ee033)	CCTBX Commit via DLS Jenkins	Wed, 12 Apr 2017 11:57:00 -0700	197 lines
[git/cctbx] master: Fix call from auto-sharpen (e4433d88e)	CCTBX Commit via DLS Jenkins	Wed, 12 Apr 2017 12:50:10 -0600	70 lines
[git/cctbx] master: minor printout change (4fab9293e)	CCTBX Commit via DLS Jenkins	Wed, 12 Apr 2017 12:49:27 -0600	77 lines
[git/cctbx] master: extracting libtiff4.0.6x64.zip or libtiff4.0.6x32.zip during base step on Windows (03e6a64ca)	CCTBX Commit via DLS Jenkins	Wed, 12 Apr 2017 15:08:39 +0100	158 lines
[git/cctbx] master: Location of include and lib directories for libtiff on Windows. Tidy up dynamically allocated array (8546d4a4e)	CCTBX Commit via DLS Jenkins	Wed, 12 Apr 2017 15:01:36 +0100	155 lines
Jenkins 5a cctbx Tests build 4157 Fixed	Jenkins Build Server (Diamond)	Wed, 12 Apr 2017 09:21:39 +0100	36 lines
[git/cctbx] master: Fixed tests where dials isnt defined (2e0a6fdc5)	CCTBX Commit via DLS Jenkins	Wed, 12 Apr 2017 09:15:30 +0100	126 lines
[git/cctbx] master: Removing problematic file... again (sorry) (6142928c5)	CCTBX Commit via DLS Jenkins	Wed, 12 Apr 2017 08:50:10 +0100	254 lines
Jenkins 5a cctbx Tests build 4154 Still unstable	Jenkins Build Server (Diamond)	Wed, 12 Apr 2017 00:29:47 +0100	56 lines
Jenkins 5a cctbx Tests build 4154 Still unstable	Jenkins Build Server (Diamond)	Wed, 12 Apr 2017 00:29:47 +0100	119 lines
[git/cctbx] master: Remove extra dash from -Werror flag (aa235db58)	CCTBX Commit via DLS Jenkins	Tue, 11 Apr 2017 16:12:21 -0700	80 lines
Jenkins 5a cctbx Tests build 4153 Still Failing	Jenkins Build Server (Diamond)	Tue, 11 Apr 2017 21:02:57 +0100	306 lines
[git/cctbx] master: Base: moved libtiff dependency to be general instead of just for Linux (63d9e4c01)	CCTBX Commit via DLS Jenkins	Tue, 11 Apr 2017 13:01:29 -0700	98 lines
Jenkins 5a cctbx Tests build 4152 Still Failing	Jenkins Build Server (Diamond)	Tue, 11 Apr 2017 20:55:56 +0100	303 lines
[git/cctbx] master: test (6cf1be7ba)	CCTBX Commit via DLS Jenkins	Tue, 11 Apr 2017 12:54:36 -0700	68 lines
Jenkins 5a cctbx Tests build 4151 Still Failing	Jenkins Build Server (Diamond)	Tue, 11 Apr 2017 20:49:53 +0100	299 lines
[git/cctbx] master: target free minimization (13e33d593)	CCTBX Commit via DLS Jenkins	Tue, 11 Apr 2017 12:48:41 -0700	166 lines
Jenkins 5a cctbx Tests build 4150 Failure	Jenkins Build Server (Diamond)	Tue, 11 Apr 2017 20:46:58 +0100	294 lines
[git/cctbx] master: avoid --Werror=vla on Centos5 where old compiler does not support it (a6abbe9e4)	CCTBX Commit via DLS Jenkins	Tue, 11 Apr 2017 20:45:03 +0100	96 lines
[git/cctbx] master: Do not allow non-portable extension to C++ for allocating array dynamically. (8b3cd7e0d)	CCTBX Commit via DLS Jenkins	Tue, 11 Apr 2017 19:09:08 +0100	80 lines
[git/cctbx] master: Attempted fix for runtime error on build machine (498f144be)	CCTBX Commit via DLS Jenkins	Tue, 11 Apr 2017 16:57:56 +0100	88 lines
Jenkins 5a cctbx Tests build 4147 Unstable	Jenkins Build Server (Diamond)	Tue, 11 Apr 2017 16:39:52 +0100	41 lines
Jenkins 5a cctbx Tests build 4147 Unstable	Jenkins Build Server (Diamond)	Tue, 11 Apr 2017 16:39:52 +0100	105 lines
[git/cctbx] master: Fix compile error (ee061dbec)	CCTBX Commit via DLS Jenkins	Tue, 11 Apr 2017 16:34:25 +0100	74 lines
Jenkins 5a cctbx Tests build 4146 Failure	Jenkins Build Server (Diamond)	Tue, 11 Apr 2017 16:26:04 +0100	208 lines
[git/cctbx] master: Added an IncorrectFormatError class that is raised inside the format __init__ function rather than a plain assertion. Need to change exception handling to ensure we're not masking stuff (6beeb1f1c)	CCTBX Commit via DLS Jenkins	Tue, 11 Apr 2017 14:56:15 +0100	318 lines
[git/cctbx] master: Added readers for cbf, smv, tiff + tests (902c3d90c)	CCTBX Commit via DLS Jenkins	Tue, 11 Apr 2017 14:56:15 +0100	82 lines
[git/cctbx] master: Added TIFF reader class (25d26996f)	CCTBX Commit via DLS Jenkins	Tue, 11 Apr 2017 14:53:07 +0100	701 lines
[git/cctbx] master: Replacing illegal C++ code with proper dynamic array allocation. (a31eb2bf0)	CCTBX Commit via DLS Jenkins	Tue, 11 Apr 2017 11:31:24 +0100	85 lines
[git/cctbx] master: added comment (74d8783fc)	CCTBX Commit via DLS Jenkins	Tue, 11 Apr 2017 10:56:45 +0100	104 lines
[git/cctbx] master: Set up striping (or chunking) of an experiment. (f7c2b9e4a)	CCTBX Commit via DLS Jenkins	Mon, 10 Apr 2017 17:22:31 -0700	590 lines
[git/cctbx] master: Added access to rotamer frequencies (with test) (de06595ee)	CCTBX Commit via DLS Jenkins	Mon, 10 Apr 2017 14:55:06 -0700	180 lines
[git/cctbx] master: Option to perform minimization using gradients only (without the need of the target function value). This is contributed by Min Zheng from Q\|R team: www.qrefine.com . (c9b391151)	CCTBX Commit via DLS Jenkins	Mon, 10 Apr 2017 11:47:45 -0700	2041 lines
[git/cctbx] master: SpinCtrl should return integers (to avoid flooring) when digits == 0. (f86c14a7d)	CCTBX Commit via DLS Jenkins	Mon, 10 Apr 2017 11:36:12 -0700	131 lines
[git/cctbx] master: Skipping GM if no SS elements were idealized. (6223e9f4e)	CCTBX Commit via DLS Jenkins	Mon, 10 Apr 2017 09:46:21 -0700	133 lines
[git/cctbx] master: Allow map_file in minimize_chain.py (f29a42f1b)	CCTBX Commit via DLS Jenkins	Sat, 8 Apr 2017 12:57:24 -0600	117 lines
[git/cctbx] master: allow easy call to auto_sharpen (921f8fdcd)	CCTBX Commit via DLS Jenkins	Sat, 8 Apr 2017 09:11:33 -0600	236 lines
[git/cctbx] master: Update chain_comparison to default using crystal symmetry if sg is not p1 (d39330113)	CCTBX Commit via DLS Jenkins	Fri, 7 Apr 2017 09:23:58 -0600	235 lines
[git/cctbx] master: format class for I19-2 detector S/N 3-0104 with support for dynamic shadow masking from diamond anvil cell (67393b622)	CCTBX Commit via DLS Jenkins	Fri, 7 Apr 2017 15:43:42 +0100	283 lines
[git/cctbx] master: dxtbx: remove FormatCBFFullPilatusDLSI19.py as it won't understand anything (understand method always returns False) (137c2e082)	CCTBX Commit via DLS Jenkins	Fri, 7 Apr 2017 15:26:06 +0100	559 lines
[git/cctbx] master: Update chain_comparison to default to use_crystal_symmetry for all but P1 (5a705f772)	CCTBX Commit via DLS Jenkins	Fri, 7 Apr 2017 07:46:00 -0600	213 lines
[git/cctbx] master: Optimization additions (31d758e66)	CCTBX Commit via DLS Jenkins	Thu, 6 Apr 2017 17:31:51 -0700	1243 lines
[git/cctbx] master: commit notes (6c494c2ad)	CCTBX Commit via DLS Jenkins	Thu, 6 Apr 2017 17:31:51 -0700	66 lines
Jenkins 5b cctbx MacOS build 1099 Fixed	Jenkins Build Server (Diamond)	Fri, 7 Apr 2017 00:40:41 +0100	38 lines
[git/cctbx] master: Fix typo in recent check-in (742e5d8c7)	CCTBX Commit via DLS Jenkins	Thu, 6 Apr 2017 16:53:14 -0600	94 lines
[git/cctbx] master: Update model-based sharpening to use model region only (1b5eb67a0)	CCTBX Commit via DLS Jenkins	Thu, 6 Apr 2017 15:29:40 -0600	1058 lines
Jenkins 5b cctbx MacOS build 1098 Unstable	Jenkins Build Server (Diamond)	Thu, 6 Apr 2017 16:20:04 +0100	35 lines
[git/cctbx] master: ssize_t is declared with typedef in HDF5-1.8.16\include\H5public.h so don't define it here (34266c58c)	CCTBX Commit via DLS Jenkins	Thu, 6 Apr 2017 15:47:53 +0100	86 lines
[git/cctbx] master: Windows bug fix for broken authenticated build (b8a9b5757)	CCTBX Commit via DLS Jenkins	Thu, 6 Apr 2017 15:18:59 +0100	79 lines
[git/cctbx] master: Bug fix: Allow anonymous build of CCTBX on Windows (cf73dae07)	CCTBX Commit via DLS Jenkins	Thu, 6 Apr 2017 14:29:10 +0100	97 lines
[git/cctbx] master: Python <=2.7.8 compatibility (c898a7346)	CCTBX Commit via DLS Jenkins	Thu, 6 Apr 2017 10:59:46 +0100	119 lines
[git/cctbx] master: Next wave of SF4 tests :metal: (4a198ac56)	CCTBX Commit via DLS Jenkins	Thu, 6 Apr 2017 02:29:27 -0700	328 lines
[git/cctbx] master: Do not attempt to update repositories when not on a branch. While a developer should never be in such a state this may be the default for testing environments such as Jenkins. (398e38d75)	CCTBX Commit via DLS Jenkins	Thu, 6 Apr 2017 09:23:28 +0100	163 lines
[git/cctbx] master: Tests for the new metal coordination code (5fe86b8bd)	CCTBX Commit via DLS Jenkins	Thu, 6 Apr 2017 00:09:25 -0700	754 lines
[git/cctbx] master: Enable clustering directly from DIALS objects. (ab0186b3f)	CCTBX Commit via DLS Jenkins	Wed, 5 Apr 2017 17:12:34 -0700	238 lines
[git/cctbx] master: Windows: use the unistd.h file from cbflib_adaptbx since VC++9.0 hasn't got one (2bbd78f09)	CCTBX Commit via DLS Jenkins	Wed, 5 Apr 2017 18:12:00 +0100	124 lines
Jenkins 5a cctbx Tests build 4113 Fixed	Jenkins Build Server (Diamond)	Wed, 5 Apr 2017 16:17:25 +0100	37 lines
[git/cctbx] master: Removed std::copy_n (c++11 function) due to build failure (20b225907)	CCTBX Commit via DLS Jenkins	Wed, 5 Apr 2017 16:10:57 +0100	104 lines
Jenkins 5a cctbx Tests build 4112 Failure	Jenkins Build Server (Diamond)	Wed, 5 Apr 2017 16:02:17 +0100	176 lines
[git/cctbx] master: Added a first commit of an image reader c++ base class with a class for reading SMV .img files (2f3d9d413)	CCTBX Commit via DLS Jenkins	Wed, 5 Apr 2017 16:00:15 +0100	1268 lines
[git/cctbx] master: Add recursive git clone. (bc70320b9)	CCTBX Commit via DLS Jenkins	Tue, 4 Apr 2017 20:41:26 -0700	101 lines
[git/cctbx] master: fixed coordination is None bug (677ea618a)	CCTBX Commit via DLS Jenkins	Tue, 4 Apr 2017 16:09:01 -0700	88 lines
Jenkins 5a cctbx Tests build 4107 Fixed	Jenkins Build Server (Diamond)	Tue, 4 Apr 2017 23:34:17 +0100	36 lines
[git/cctbx] master: Move the clustering command line tools to clustering/command_line (61071a745)	CCTBX Commit via DLS Jenkins	Tue, 4 Apr 2017 15:33:03 -0700	81 lines
[git/cctbx] master: Move the clustering command_line tools to clustering/command_line (954f91378)	CCTBX Commit via DLS Jenkins	Tue, 4 Apr 2017 15:33:03 -0700	105 lines
[git/cctbx] master: ADSCImage defaults to built-in open method when not otherwise instructed by dxtbx.format (a03ca17cb)	CCTBX Commit via DLS Jenkins	Tue, 4 Apr 2017 15:28:58 -0700	77 lines
[git/cctbx] master: Fixing target values and test. (c3cf70acc)	CCTBX Commit via DLS Jenkins	Tue, 4 Apr 2017 12:58:35 -0700	160 lines
[git/cctbx] master: Fixing and extending more tests. (45ac2cac1)	CCTBX Commit via DLS Jenkins	Tue, 4 Apr 2017 12:23:27 -0700	294 lines
[git/cctbx] master: Adding angle restraints for hydrogen bonds in alpha helices. Fixing tests. (2e49d771a)	CCTBX Commit via DLS Jenkins	Tue, 4 Apr 2017 12:23:27 -0700	1478 lines
[git/cctbx] master: Show angles in pymol format. Fixes for correct work with alternative conformations, insertion codes, empty chain ids. (793d33732)	CCTBX Commit via DLS Jenkins	Tue, 4 Apr 2017 12:23:27 -0700	159 lines
Jenkins 5a cctbx Tests build 4104 Unstable	Jenkins Build Server (Diamond)	Tue, 4 Apr 2017 20:06:15 +0100	99 lines
Jenkins 5a cctbx Tests build 4104 Unstable	Jenkins Build Server (Diamond)	Tue, 4 Apr 2017 20:06:15 +0100	65 lines
[git/cctbx] master: Modify the detectorbase class for all images in the SMV family so that the open_file() method supports bz2 compression. Fixes dials_regression test.py. Could easily be extended to the other formats. (5bb26d19b)	CCTBX Commit via DLS Jenkins	Tue, 4 Apr 2017 12:00:40 -0700	386 lines
[git/cctbx] master: Merge pull request #22 from weninc/fix-hdf5 (0360700c8)	CCTBX Commit via DLS Jenkins	Tue, 4 Apr 2017 09:07:51 -0700	54 lines
[git/cctbx] master: Resolve symbolic links when tar archiving boost_hot before copying to Windows PCs (d31d8af99)	CCTBX Commit via DLS Jenkins	Tue, 4 Apr 2017 16:15:00 +0100	76 lines
[git/cctbx] master: more qrefine stuff (82edc9acb)	CCTBX Commit via DLS Jenkins	Tue, 4 Apr 2017 06:56:40 -0700	193 lines
[git/cctbx] master: Merge branch 'metal_coordination_library' (160d00653)	CCTBX Commit via DLS Jenkins	Tue, 4 Apr 2017 06:35:17 -0700	69 lines
[git/cctbx] master: whitespace error? (8a1ce5459)	CCTBX Commit via DLS Jenkins	Tue, 4 Apr 2017 06:34:11 -0700	48 lines
[git/cctbx] master: Stub for Q\|R builder :cn: (02c9dcd8f)	CCTBX Commit via DLS Jenkins	Tue, 4 Apr 2017 06:32:44 -0700	259 lines
[git/cctbx] master: include timings in output (d3ea6e8da)	CCTBX Commit via DLS Jenkins	Tue, 4 Apr 2017 06:32:43 -0700	113 lines
[git/cctbx] master: Added F3S (c98c54f11)	CCTBX Commit via DLS Jenkins	Tue, 4 Apr 2017 06:32:43 -0700	694 lines
[git/cctbx] master: Metal Coordination Library - SF4 (fa872e0ce)	CCTBX Commit via DLS Jenkins	Tue, 4 Apr 2017 06:32:42 -0700	822 lines
[git/cctbx] master: Update oscillation starting angle if image range is changed (c210427dc)	CCTBX Commit via DLS Jenkins	Tue, 4 Apr 2017 13:24:54 +0100	83 lines
[git/cctbx] master: Improve readability of cluster.unit_cell output. (fefc0c726)	CCTBX Commit via DLS Jenkins	Mon, 3 Apr 2017 17:43:05 -0700	221 lines
[git/cctbx] master: move cbf.h outside extern C (8e172c921)	CCTBX Commit via DLS Jenkins	Mon, 3 Apr 2017 12:31:45 -0700	86 lines
[git/cctbx] master: Join creation of hbond, angle and planarity restraints in NA basepair SS to save 30% of runtime. (d299712d3)	CCTBX Commit via DLS Jenkins	Mon, 3 Apr 2017 11:34:49 -0700	780 lines
[git/cctbx] master: More informative runtime stats (7e6e3d950)	CCTBX Commit via DLS Jenkins	Mon, 3 Apr 2017 11:03:51 -0700	2304 lines
[git/cctbx] master: Merge pull request #21 from weninc/weninc-anaconda (c161c60ea)	CCTBX Commit via DLS Jenkins	Mon, 3 Apr 2017 10:33:26 -0700	54 lines
[git/cctbx] master: modify dxtbx_lib_paths for anaconda (67aae7267)	CCTBX Commit via DLS Jenkins	Sun, 2 Apr 2017 23:10:26 -0700	77 lines
[git/cctbx] master: minor fix in find_ss_from_ca (e3624985d)	CCTBX Commit via DLS Jenkins	Sat, 1 Apr 2017 18:25:45 -0600	83 lines
[git/cctbx] master: minor typo (f8ffeaf73)	CCTBX Commit via DLS Jenkins	Sat, 1 Apr 2017 10:40:59 -0600	77 lines
[git/cctbx] master: Halt bootstrap if git pull fails due to local edits. (ff4d2ebe2)	CCTBX Commit via DLS Jenkins	Fri, 31 Mar 2017 16:09:11 -0700	100 lines

CCTBX-COMMIT Archives

April 2017

Options

Subject

From

Date

Size

JiscMail Tools

RSS Feeds and Sharing

Search Archives

Archives