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January 2021


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[git/cctbx_project] master: avoid power scaling of colours for phases and map coefficients (552ee52816)

CCTBX commit

Sat, 30 Jan 2021 12:37:57 +0000

282 lines

[git/cctbx_project] master: iotbx: add chem_data check for test (f349073bc0)

CCTBX commit

Fri, 29 Jan 2021 20:31:22 -0800

153 lines

[git/cctbx_project] master: Persist colour schemes for different data types across sessions. (0bed7e0e89)

CCTBX commit

Sat, 30 Jan 2021 00:38:13 +0000

1017 lines

[git/cctbx_project] master: Some cleanup (88d13b9e87)

CCTBX commit

Fri, 29 Jan 2021 10:10:44 -0800

172 lines

[git/dxtbx] master: DataFactory: if VDS don't also include individual external datasets (#286) (ee85707f)

DXTBX commit

Fri, 29 Jan 2021 14:29:33 +0000

282 lines

[git/dxtbx] master: Ensure format instance is cached when first read (#289) (7c1b2bf2)

DXTBX commit

Fri, 29 Jan 2021 10:50:18 +0000

255 lines

[git/cctbx_project] master: More flexibility to the users. Look for filenames also in reference_group scope. (8db5aedd7d)

CCTBX commit

Thu, 28 Jan 2021 17:44:05 -0800

168 lines

[git/cctbx_project] master: fix pH test (b13e7350e2)

CCTBX commit

Thu, 28 Jan 2021 12:01:16 -0800

122 lines

[git/cctbx_project] master: Added html2canvas for saving image with legends as html div elements. More tooltips. (e2c7d21435)

CCTBX commit

Thu, 28 Jan 2021 19:57:02 +0000

95 lines

[git/cctbx_project] master: box_around_molecule: better automatic filename and format handling (36ead88670)

CCTBX commit

Thu, 28 Jan 2021 11:28:28 -0800

517 lines

[git/dxtbx] master: Block commits directly to master with pre-commit (#287) (f45d1e4a)

DXTBX commit

Thu, 28 Jan 2021 17:04:25 +0000

96 lines

[git/dxtbx] master: NeXus: avoid unnecessarily walking the full tree (#279) (61059bfe)

DXTBX commit

Thu, 28 Jan 2021 17:02:24 +0000

1028 lines

[git/cctbx_project] master: mmtbx: update file handles in ensemble refinement for binary/text writing (50101d2281)

CCTBX commit

Wed, 27 Jan 2021 17:18:16 -0800

359 lines

[git/cctbx_project] master: Break it (temporarily) (18d7e2da90)

CCTBX commit

Wed, 27 Jan 2021 14:05:54 -0800

85 lines

[git/cctbx_project] master: method to help with phi/psi/2 validation (fc4c0fdfb1)

CCTBX commit

Wed, 27 Jan 2021 14:01:35 -0800

143 lines

[git/cctbx_project] master: remove unused import (bf3bda712e)

CCTBX commit

Wed, 27 Jan 2021 21:32:45 +0000

84 lines

[git/cctbx_project] master: Bug fix reading Qsettings as float variables (81480ef373)

CCTBX commit

Wed, 27 Jan 2021 20:06:07 +0000

167 lines

[git/cctbx_project] master: psana_environment: pin python to 3.7 to speed up conda solve (b4ca3e4183)

CCTBX commit

Wed, 27 Jan 2021 10:25:28 -0800

87 lines

[git/cctbx_project] master: mmtbx: fix some file handles and add check for None (235e367381)

CCTBX commit

Wed, 27 Jan 2021 09:33:42 -0800

297 lines

[git/cctbx_project] master: retranslateUi() should use QtWidgets.QApplication instead of QCoreApplication which mustn't be invoked before calling QApplication.setAttribute(Qt.AA_EnableHighDpiScaling) in HKLviewer.py (98b83bbda5)

CCTBX commit

Wed, 27 Jan 2021 16:29:58 +0000

872 lines

[git/cctbx_project] master: get rid of illegal utf8 character (1916f17c79)

CCTBX commit

Wed, 27 Jan 2021 15:57:03 +0000

118 lines

[git/cctbx_project] master: Move find_nearest_orthonormal_matrix() to scitbx.matrix with added tests (192420832a)

CCTBX commit

Wed, 27 Jan 2021 15:35:10 +0000

409 lines

[git/dxtbx] master: DataFactory: if VDS don't also include individual external datasets (2d797fc2)

DXTBX commit

Wed, 27 Jan 2021 12:27:24 +0000

206 lines

[git/dxtbx] master: Only parse schema for explicit URIs (#284) (219e0c79)

DXTBX commit

Wed, 27 Jan 2021 10:17:30 +0000

116 lines

[git/cctbx_project] master: Find nearest orthonormal matrix when sgtbx.rt_mx(symbol= hkl_op) returns a strained rotation matrix. roundoff() for matrices. Bug fixes. (f682fe333e)

CCTBX commit

Tue, 26 Jan 2021 20:13:37 +0000

817 lines

[git/dxtbx] master: Correct hdf5 plugins warning message (#282) (dac0dbf7)

DXTBX commit

Mon, 25 Jan 2021 15:10:17 +0000

148 lines

[git/cctbx_project] master: clean clutter (b25556c4e7)

CCTBX commit

Mon, 25 Jan 2021 04:45:06 -0800

64 lines

[git/cctbx_project] master: Add method for removing all models except first; catch missing entry (b8a471b974)

CCTBX commit

Sun, 24 Jan 2021 20:17:56 -0800

158 lines

[git/cctbx_project] master: mmtbx: temporarily switch back to previous cif parser for chemical_components (cf2f2c29c1)

CCTBX commit

Fri, 22 Jan 2021 17:47:19 -0800

109 lines

[git/cctbx_project] master: small print out change (0a9a4bb885)

CCTBX commit

Thu, 21 Jan 2021 16:18:54 -0800

94 lines

[git/cctbx_project] master: clean clutter (a89b9ebb4b)

CCTBX commit

Thu, 21 Jan 2021 14:14:51 -0800

64 lines

[git/cctbx_project] master: Make check of symmetry more restrictive when setting new crystal_symmetry (a4915b2d27)

CCTBX commit

Thu, 21 Jan 2021 13:56:31 -0800

100 lines

[git/cctbx_project] master: Catch case with overlapping sites in find_ss_from_ca; allow return_as_model in model_from_hierarchy (5bab353cc1)

CCTBX commit

Thu, 21 Jan 2021 09:14:07 -0800

177 lines

[git/cctbx_project] master: Clean clutter (84489ab871)

CCTBX commit

Thu, 21 Jan 2021 10:04:17 +0000

82 lines

[git/cctbx_project] master: Expose logging functions used by the minimiser to the user (220b8aeb14)

CCTBX commit

Thu, 21 Jan 2021 10:04:17 +0000

461 lines

[git/cctbx_project] master: fix propagating parameters (ca80b8e3e0)

CCTBX commit

Wed, 20 Jan 2021 14:32:16 -0800

255 lines

[git/cctbx_project] master: Update mmcif key names in as_cif_block method of iotbx.merging_statistics.dataset_statistics (#582) (0faba9dd4a)

CCTBX commit

Wed, 20 Jan 2021 15:03:07 +0000

261 lines

[git/dxtbx] master: Increase default Scan.append tolerance to 3% of Image width (#277) (5b32f66c)

DXTBX commit

Wed, 20 Jan 2021 13:59:35 +0000

176 lines

[git/cctbx_project] master: relax tolerance for improper rotation operators, fix feedback in GUI when changing bin thresholds (d4fea60d2f)

CCTBX commit

Wed, 20 Jan 2021 13:28:33 +0000

634 lines

[git/cctbx_project] master: Decluttering Phenix: remove old code for iotbx.pdb.box_around_molecule (19ef380b2b)

CCTBX commit

Tue, 19 Jan 2021 21:15:22 -0800

172 lines

[git/cctbx_project] master: Decluttering Phenix: Use ProgramTemplate and allow mmcif output format for iotbx.pdb.box_around_molecule (52d96cbaf2)

CCTBX commit

Tue, 19 Jan 2021 21:12:48 -0800

450 lines

[git/cctbx_project] master: Reduce rewrite: Move elbow import into function. (7e656a7d3c)

CCTBX commit

Tue, 19 Jan 2021 20:15:28 -0800

110 lines

[git/cctbx_project] master: Handle case where LIBTBX_BUILD is set empty in conda install (41e365efb8)

CCTBX commit

Tue, 19 Jan 2021 09:17:28 +0000

91 lines

[git/cctbx_project] master: Catch missing data; allow return of model in from_sites_cart (ea22477f33)

CCTBX commit

Mon, 18 Jan 2021 13:57:41 -0800

146 lines

[git/dxtbx] master: DIALS 3.3.1 Changelog (af18ae60)

DXTBX commit

Mon, 18 Jan 2021 12:01:34 +0000

94 lines

[git/cctbx_project] master: spelling fixes (8fb0a375c9)

CCTBX commit

Mon, 18 Jan 2021 11:06:33 +0000

214 lines

[git/cctbx_project] master: help links (956e9196b8)

CCTBX commit

Fri, 15 Jan 2021 19:28:40 +0000

454 lines

[git/cctbx_project] master: URL to online draft help (24c4cda5bc)

CCTBX commit

Fri, 15 Jan 2021 19:28:40 +0000

227 lines

[git/cctbx_project] master: Adding comment to note that we need to make hydrogenate work on models that have alternate locations (8ed50016b0)

CCTBX commit

Thu, 14 Jan 2021 14:54:34 -0500

93 lines

[git/cctbx_project] master: Allow setting chain_id (ffa1f1aa01)

CCTBX commit

Thu, 14 Jan 2021 11:50:31 -0800

128 lines

[git/dxtbx] master: Maintenance: Don't run newsfragment check on draft PRs (1a46370c)

DXTBX commit

Thu, 14 Jan 2021 13:39:45 +0000

104 lines

[git/cctbx_project] master: Reduce rewrite: add timing for development and add Nigels electron code. (8a9b892529)

CCTBX commit

Wed, 13 Jan 2021 16:30:46 -0800

987 lines

[git/cctbx_project] master: minor edit (e269631739)

CCTBX commit

Wed, 13 Jan 2021 14:00:52 -0800

86 lines

[git/cctbx_project] master: Add parameter unassembled_data_key (SwissFEL JF16M) (10a556b6b8)

CCTBX commit

Tue, 12 Jan 2021 18:43:30 -0800

147 lines

[git/cctbx_project] master: tidier (f32f5a4858)

CCTBX commit

Wed, 13 Jan 2021 02:23:34 +0000

459 lines

[git/cctbx_project] master: Reduce rewrite: add N-terminal hydrogens using Nigels function (c09960f420)

CCTBX commit

Mon, 11 Jan 2021 21:56:03 -0800

77 lines

[git/cctbx_project] master: Adapt N-terminal funciton for usage in reduce rewrite (29cc22d796)

CCTBX commit

Mon, 11 Jan 2021 21:38:24 -0800

229 lines

[git/cctbx_project] master: Fix for displaying incorrect hkl in tooltip of Friedel mate (57dad5a47a)

CCTBX commit

Tue, 12 Jan 2021 00:35:51 +0000

404 lines

[git/dxtbx] master: Make FormatHDF5SaclaMPCCD lazy (#227) (0eb93474)

DXTBX commit

Mon, 11 Jan 2021 11:47:55 +0000

363 lines

[git/cctbx_project] master: Bug fixes. Default to displaying data and not sigma values when making a new miller array (79053f9014)

CCTBX commit

Mon, 11 Jan 2021 02:04:23 +0000

425 lines

[git/dxtbx] master: Clean clutter (f38162aa)

DXTBX commit

Sun, 10 Jan 2021 05:10:53 +0000

242 lines

[git/cctbx_project] master: Allow saving reflections expanded to lower symmetry. (4afcf83872)

CCTBX commit

Sun, 10 Jan 2021 00:00:53 +0000

560 lines

[git/cctbx_project] master: Bug fix with a test (see test for details). This fixes rare crashes of phenix.fem and phenix.model_map and may be even phenix.composite_omit_map (b7360e6a75)

CCTBX commit

Fri, 8 Jan 2021 12:07:01 -0800

253 lines

[git/cctbx_project] master: cctbx: fix string (59dcc0d669)

CCTBX commit

Fri, 8 Jan 2021 10:12:32 -0800

119 lines

[git/cctbx_project] master: mmtbx: fix dictionary keys (e7bba0f422)

CCTBX commit

Fri, 8 Jan 2021 10:12:32 -0800

96 lines

[git/cctbx_project] master: mmtbx: more consistent handling of text files as text (85ad05675d)

CCTBX commit

Fri, 8 Jan 2021 10:12:32 -0800

283 lines

[git/dxtbx] master: Enable SWMR-mode reading NeXus files (#270) (b030a2db)

DXTBX commit

Fri, 8 Jan 2021 14:55:10 +0000

92 lines

[git/dxtbx] master: Switch tests using SACLA data to public repository (dials-data) (#275) (2803f75d)

DXTBX commit

Fri, 8 Jan 2021 14:50:59 +0000

364 lines

[git/cctbx_project] master: CI: make Windows builds and test consistent (6489abc995)

CCTBX commit

Thu, 7 Jan 2021 15:33:48 -0800

176 lines

[git/cctbx_project] master: Fixes, Use the same dialog box for making new data of one or two miller arrays. Match indices of newdata array with other miller arrays. (662a406b83)

CCTBX commit

Thu, 7 Jan 2021 22:20:17 +0000

1044 lines

[git/cctbx_project] master: Bugfix: Create GRM when needed because it does not created automatically anymore. (9d9c1f3cae)

CCTBX commit

Thu, 7 Jan 2021 12:46:11 -0800

93 lines

[git/dxtbx] master: Add number of images to Scan ostream. (#271) (cf9d8ef5)

DXTBX commit

Thu, 7 Jan 2021 14:50:27 +0000

109 lines

[git/dxtbx] master: Add a Github Action to check for newsfragments (#272) (92ac6d33)

DXTBX commit

Thu, 7 Jan 2021 14:41:44 +0000

276 lines

[git/cctbx_project] master: Tidy (28ab5f15ef)

CCTBX commit

Wed, 6 Jan 2021 19:56:07 +0000

1163 lines

[git/cctbx_project] master: Add as_size_t method (#581) (efd71611f7)

CCTBX commit

Wed, 6 Jan 2021 09:16:48 +0000

184 lines

[git/cctbx_project] master: CI: use Ubuntu 18.04 for downloading xfel_regression (98d5a300b2)

CCTBX commit

Tue, 5 Jan 2021 19:02:03 -0800

93 lines

[git/cctbx_project] master: mmtbx: fix new xrange (10f817ca63)

CCTBX commit

Tue, 5 Jan 2021 15:28:14 -0800

87 lines

[git/cctbx_project] master: mmtbx: add check against None (c40f8e4ca2)

CCTBX commit

Tue, 5 Jan 2021 15:28:14 -0800

125 lines

[git/cctbx_project] master: mmtbx: ensure objects are lists (d44a1b385a)

CCTBX commit

Tue, 5 Jan 2021 15:28:14 -0800

253 lines

[git/cctbx_project] master: mmtbx: ensure object is indexable (adb483118a)

CCTBX commit

Tue, 5 Jan 2021 15:28:14 -0800

101 lines

[git/cctbx_project] master: mmtbx: add check against None (c8148f72fc)

CCTBX commit

Tue, 5 Jan 2021 15:28:14 -0800

91 lines

[git/cctbx_project] master: mmtbx: add check against None (47ed08afb0)

CCTBX commit

Tue, 5 Jan 2021 15:28:14 -0800

137 lines

[git/cctbx_project] master: mmtbx: ensure rotamer object is hashable (51d768efb0)

CCTBX commit

Tue, 5 Jan 2021 15:28:14 -0800

90 lines

[git/cctbx_project] master: Ensure variables are defined (4eacff28ce)

CCTBX commit

Tue, 5 Jan 2021 15:28:14 -0800

165 lines

[git/cctbx_project] master: mmtbx: clean up log and stderr (40593bd207)

CCTBX commit

Tue, 5 Jan 2021 15:28:14 -0800

89 lines

[git/cctbx_project] master: Create empty model if selection results in None (768ab057ab)

CCTBX commit

Tue, 5 Jan 2021 15:25:54 -0800

109 lines

[git/cctbx_project] master: Tidier (439a74e8ea)

CCTBX commit

Tue, 5 Jan 2021 20:36:58 +0000

937 lines

[git/cctbx_project] master: silences un-initialized warning (349fb7b214)

CCTBX commit

Mon, 4 Jan 2021 14:29:03 -0800

96 lines

[git/cctbx_project] master: de-clutter, fixes for using browsers from the python prompt (fb1970aaee)

CCTBX commit

Mon, 4 Jan 2021 21:17:22 +0000

1175 lines

[git/dxtbx] master: Towncrier for DIALS 3.3 (50faf622)

DXTBX commit

Mon, 4 Jan 2021 15:37:38 +0000

578 lines

[git/dxtbx] master: Remove serialize.dump and DataBlockDumper as scheduled (#269) (80ab3372)

DXTBX commit

Mon, 4 Jan 2021 10:46:53 +0000

2095 lines

[git/cctbx_project] master: clean clutter (49001e54f7)

CCTBX commit

Sun, 3 Jan 2021 17:06:37 -0800

95 lines

[git/cctbx_project] master: Fix inefficient check of multiple indices (d08b6b72a9)

CCTBX commit

Mon, 4 Jan 2021 00:28:50 +0000

264 lines

[git/cctbx_project] master: Use div elements as annotations instead of shape.addText(...) calls. div elements retain the same size regardless of camera distance. (95aa84699b)

CCTBX commit

Mon, 4 Jan 2021 00:28:50 +0000

389 lines

[git/cctbx_project] master: tidy (641b4b0111)

CCTBX commit

Mon, 4 Jan 2021 00:28:50 +0000

268 lines

[git/cctbx_project] master: Associate tooltips with left click or hovering only. Aciate right click with visualising symmetry reflections and highlighting matching hkls in millerarraytable only (c3e98ba6fe)

CCTBX commit

Mon, 4 Jan 2021 00:28:49 +0000

486 lines

[git/cctbx_project] master: Persist nth_power_scale_radii and scale values for next session (ae58b18401)

CCTBX commit

Mon, 4 Jan 2021 00:28:49 +0000

514 lines

[git/cctbx_project] master: Draw a wireframe sphere around a reflection selected with a double click in the millerarraytable from the GUI (23e46eb2da)

CCTBX commit

Mon, 4 Jan 2021 00:28:49 +0000

1288 lines

[git/cctbx_project] master: tidier (3e511b3af7)

CCTBX commit

Mon, 4 Jan 2021 00:28:48 +0000

1619 lines

[git/cctbx_project] master: Select matching row with HKL in millerarraytable when clicking on a reflection (c6830c3153)

CCTBX commit

Mon, 4 Jan 2021 00:28:48 +0000

476 lines

[git/cctbx_project] master: Showing symmetry mates of a reflection when mouse clicking it (7f6ea34e0b)

CCTBX commit

Mon, 4 Jan 2021 00:28:47 +0000

1033 lines

[git/cctbx_project] master: bug fixing (91e728b305)

CCTBX commit

Mon, 4 Jan 2021 00:28:47 +0000

1528 lines

[git/cctbx_project] master: ResetView button in browser, better font size adjustment in MPLColourSchemes widget (9b58123b45)

CCTBX commit

Mon, 4 Jan 2021 00:28:47 +0000

630 lines

[git/cctbx_project] master: tidying up (a3cfe2d9a0)

CCTBX commit

Mon, 4 Jan 2021 00:28:46 +0000

2305 lines

[git/cctbx_project] master: In progress: Animating rotation around selected vector (ac2d4b46e8)

CCTBX commit

Mon, 4 Jan 2021 00:28:46 +0000

750 lines

[git/cctbx_project] master: converting user defined rotation operator to a rotation vector (574b121dfe)

CCTBX commit

Mon, 4 Jan 2021 00:28:45 +0000

82 lines

[git/cctbx_project] master: Progressing towards drawing rotation axes and other vectors from GUI. Use Matrix4.makeRotationAxis() for rotating around an axis (a314cf4dcb)

CCTBX commit

Mon, 4 Jan 2021 00:28:45 +0000

1217 lines

[git/cctbx_project] master: In progress: changes to GUI for drawing rotation axes and other vectors (bfd33fb7dd)

CCTBX commit

Mon, 4 Jan 2021 00:28:45 +0000

84 lines

[git/cctbx_project] master: In progress: drawing rotation axes and other vectors from GUI (8ec99974eb)

CCTBX commit

Mon, 4 Jan 2021 00:28:44 +0000

1161 lines

[git/cctbx_project] master: Towards changes in GUI for drawing rotation axes and other vectors (1b4236cbc7)

CCTBX commit

Mon, 4 Jan 2021 00:28:44 +0000

82 lines

[git/cctbx_project] master: new UI layout (fca144f917)

CCTBX commit

Mon, 4 Jan 2021 00:28:43 +0000

83 lines

[git/cctbx_project] master: In progress: GUI changes for drawing rotation axes and other vectors (9da205d8d6)

CCTBX commit

Mon, 4 Jan 2021 00:28:43 +0000

79 lines

[git/cctbx_project] master: ShowRotationAxes() of symmetry operators (7bd140636b)

CCTBX commit

Mon, 4 Jan 2021 00:28:43 +0000

81 lines

[git/cctbx_project] master: Bug fix retrieveing tooltip ids (2a5da18e18)

CCTBX commit

Mon, 4 Jan 2021 00:28:42 +0000

296 lines

[git/cctbx_project] master: Bug fix white line in colour chart (34134952fa)

CCTBX commit

Mon, 4 Jan 2021 00:28:42 +0000

297 lines

[git/cctbx_project] master: Distinguish between invocation from HKLviewer or just from python with isHKLviewer variable. Bug fix (559e6078e4)

CCTBX commit

Mon, 4 Jan 2021 00:28:41 +0000

1091 lines

[git/cctbx_project] master: Use power factor different from 1.0 for colour mapping as to better expose reflections of interest (b84971cd1c)

CCTBX commit

Mon, 4 Jan 2021 00:28:41 +0000

884 lines

[git/cctbx_project] master: MakeBrowserDataColumnComboBox for allowing selecting data columns directly from browser (ef43a9394e)

CCTBX commit

Mon, 4 Jan 2021 00:28:40 +0000

952 lines

[git/cctbx_project] master: Make code simpler and more robust by putting WBmessenger.ProcessClientMessageLoop() in separate thread to avoid mixing asyncio code with plain serial code and use threading.semaphore() and time.sleep() when necessary. Bug fixes (1c7c910b3b)

CCTBX commit

Mon, 4 Jan 2021 00:28:40 +0000

1258 lines

[git/cctbx_project] master: In progress: Dialog box with MatPlotLib colour gradient charts from http://matplotlib.org/examples/color/colormaps_reference.html (c13e48db0b)

CCTBX commit

Mon, 4 Jan 2021 00:28:39 +0000

338 lines

[git/cctbx_project] master: Towards dialog box with MatPlotLib colour gradient charts (323dc5b05b)

CCTBX commit

Mon, 4 Jan 2021 00:28:39 +0000

305 lines

[git/cctbx_project] master: Invoke dialog box with MatPlotLib colour gradient charts from a double click on coulour chart in browser in the GUI. (19cdded11d)

CCTBX commit

Mon, 4 Jan 2021 00:28:39 +0000

87 lines

[git/cctbx_project] master: Allow setting bin thresholds explicitly (53a979cadf)

CCTBX commit

Mon, 4 Jan 2021 00:28:38 +0000

487 lines

[git/cctbx_project] master: Allow user changing bin thresholds (7b61e2fc1c)

CCTBX commit

Mon, 4 Jan 2021 00:28:38 +0000

736 lines

[git/cctbx_project] master: Using bin_labels_type_idxs as list of datasets used for binning and binner_idx for indicating selected binner dataset (c4198f44fa)

CCTBX commit

Mon, 4 Jan 2021 00:28:37 +0000

761 lines

[git/cctbx_project] master: Defining list of data that can be used for binning in jsview_3d.py rather than in HKLviewer.py. Bug fixes (f41e8a7566)

CCTBX commit

Mon, 4 Jan 2021 00:28:37 +0000

771 lines

[git/cctbx_project] master: Bug fixes, retain state of expanding reflections when switching to another dataset. User can now provide miller_arrays to cmdlineframes rather than a file. (a52c047940)

CCTBX commit

Mon, 4 Jan 2021 00:28:36 +0000

875 lines

[git/cctbx_project] master: Using static javascript file, bug fix in map_to_rgb_colourmap, getting portnumber from html file (bb2748da83)

CCTBX commit

Mon, 4 Jan 2021 00:28:36 +0000

83 lines

[git/cctbx_project] master: bug fixes (7dd6a34c31)

CCTBX commit

Mon, 4 Jan 2021 00:28:36 +0000

1026 lines

[git/cctbx_project] master: Towards streaming data to static javascript source code (fb61a5f769)

CCTBX commit

Mon, 4 Jan 2021 00:28:35 +0000

75 lines

[git/cctbx_project] master: In progress: streaming data to static javascript source code (99ac643713)

CCTBX commit

Mon, 4 Jan 2021 00:28:35 +0000

1213 lines

[git/cctbx_project] master: Bug fixes using graphics_utils.map_to_rgb_colourmap(), normalise rgb values to [0; 255] for div elements in web browser but [0; 1] for NGL elements in web browser Use map_directly flag for mapping data values of phases to colours rather than inferring minmax values from data for colour mapping. (282a3fb50f)

CCTBX commit

Mon, 4 Jan 2021 00:28:34 +0000

96 lines

[git/cctbx_project] master: Define HKL axes from message stream (df5d4b290f)

CCTBX commit

Mon, 4 Jan 2021 00:28:34 +0000

705 lines

[git/cctbx_project] master: Towards using boosted colour chart mapping of matplotlibs colour schemes (96e17d2c9e)

CCTBX commit

Mon, 4 Jan 2021 00:28:33 +0000

1411 lines

[git/cctbx_project] master: Reorganising colourchart implementation (23cef4de12)

CCTBX commit

Mon, 4 Jan 2021 00:28:33 +0000

75 lines

[git/cctbx_project] master: Since as_miller_array() discards unused reflections from data columns we extract original data columns from mtz and cif files for faithfully tabulating data, even if unmerged (058051baf0)

CCTBX commit

Mon, 4 Jan 2021 00:28:32 +0000

1170 lines

[git/cctbx_project] master: Towards streaming coordinates to browser rather than reloading html page (199c8835c7)

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Mon, 4 Jan 2021 00:28:32 +0000

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[git/cctbx_project] master: If saving to cif file and a miller_array contains data with more than one data point for the same hkl index iotbx.cif cannot add additional arrays to the cif block so save this miller_array to a separate file. Bug fix for binning a single reflection. (35c9806496)

CCTBX commit

Mon, 4 Jan 2021 00:28:31 +0000

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[git/cctbx_project] master: bug fix (920f3ade68)

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Mon, 4 Jan 2021 00:28:31 +0000

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[git/cctbx_project] master: Allow pixel scrolling of table (ce3726aae8)

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Mon, 4 Jan 2021 00:28:30 +0000

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[git/cctbx_project] master: Provide optional new constructor for iotbx.cif.builders.miller_array_builder that uses regular expressions for parsing reflection data labels in cif blocks and for more easily to associate data columns appropriately with one another. Default is to use the original constructor for backwards compatibility. (58eb7a11fd)

CCTBX commit

Mon, 4 Jan 2021 00:28:30 +0000

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[git/cctbx_project] master: Towards less stringent cif parsing of reflection data (37e5412bf4)

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Mon, 4 Jan 2021 00:28:29 +0000

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[git/cctbx_project] master: Use regular expressions for robustness when parsing reflection data labels in a cif file (78eafaced3)

CCTBX commit

Mon, 4 Jan 2021 00:28:29 +0000

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[git/cctbx_project] master: Towards adapting cif parsing, handling Hendrickson-Lattman coefficients (5c555f5ce0)

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Mon, 4 Jan 2021 00:28:28 +0000

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[git/cctbx_project] master: Allow tolerant search for secondary structure with find_ss_from_ca; add convenience hooks _info and _model_number in model (db812b8b20)

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Sun, 3 Jan 2021 15:13:53 -0800

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[git/cctbx_project] master: mmtbx: use regex instead of filter (c1bbbeced8)

CCTBX commit

Thu, 31 Dec 2020 16:37:42 -0800

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[git/cctbx_project] master: mmtbx: update conversion of text to float (c57c6beafc)

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Thu, 31 Dec 2020 16:37:11 -0800

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[git/cctbx_project] master: mmtbx: update string join call (0fc7515af9)

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Thu, 31 Dec 2020 15:47:03 -0800

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[git/cctbx_project] master: mmtbx: add check for None (2e721b7e94)

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Thu, 31 Dec 2020 15:47:03 -0800

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[git/cctbx_project] master: mmtbx: add rich comparisons (39704873bd)

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Thu, 31 Dec 2020 15:47:03 -0800

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[git/cctbx_project] master: mmtbx: py3 fix for new iteritems (257b9d3bae)

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Thu, 31 Dec 2020 15:46:20 -0800

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[git/cctbx_project] master: mmtbx: write temporary file as text in test (2b3204791d)

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Thu, 31 Dec 2020 15:46:20 -0800

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[git/cctbx_project] master: iotbx: add more binary extensions for PDB file check (89d6419095)

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Thu, 31 Dec 2020 15:46:20 -0800

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[git/cctbx_project] master: mmtbx: temporarily fix dictionary keys until pickle is updated (589dcb14bb)

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Thu, 31 Dec 2020 15:46:20 -0800

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[git/cctbx_project] master: mmtbx: fix dict keys (5b45875466)

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Thu, 31 Dec 2020 15:46:20 -0800

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[git/cctbx_project] master: mmtbx: skip atom sorting (e71cc442d7)

CCTBX commit

Thu, 31 Dec 2020 15:46:20 -0800

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