JiscMail Logo
Email discussion lists for the UK Education and Research communities

Help for CCTBX-COMMIT Archives


CCTBX-COMMIT Archives

CCTBX-COMMIT Archives


June 2018


View:

Show Author | Hide Author

LISTSERV Archives

LISTSERV Archives

CCTBX-COMMIT Home

CCTBX-COMMIT Home

Options

Subscribe or Unsubscribe

Subscribe or Unsubscribe

Log In

Log In

Get Password

Get Password

Subject

From

Date Sorted by Date, Most Recent First

Size

[git/cctbx] master: Hyperlink DOIs against preferred resolver (7bc69d086)

CCTBX commit

Sat, 30 Jun 2018 12:44:12 -0700

413 lines

[git/cctbx] master: Remove asserion discussed in dials/dials#587 - does not seem to do anything useful; suggests that use case of nonsense image ranges from data with virtual data set needs to be checked different way (43ae19252)

CCTBX commit

Sat, 30 Jun 2018 07:16:23 +0100

91 lines

[git/cctbx] master: small bug (c1467a8c4)

CCTBX commit

Fri, 29 Jun 2018 16:35:03 -0700

84 lines

[git/cctbx] master: adding MOPAC to qr.tests (35ae17070)

CCTBX commit

Fri, 29 Jun 2018 16:16:00 -0700

120 lines

[git/cctbx] master: Update Windows web browser to use WebView (611d8d9eb)

CCTBX commit

Fri, 29 Jun 2018 14:37:54 -0700

121 lines

[git/cctbx] master: model: has_hd is a function now. (059861455)

CCTBX commit

Thu, 28 Jun 2018 14:46:22 -0700

588 lines

[git/cctbx] master: set defaults for x-ray vs cryo-em data (a01f1b561)

CCTBX commit

Thu, 28 Jun 2018 15:15:23 -0600

361 lines

[git/cctbx] master: Handle empty pickles in cluster.unit_cell (f936da64c)

CCTBX commit

Thu, 28 Jun 2018 13:33:18 -0700

88 lines

[git/cctbx] master: Failing test for cablam, SS idealization tests fixes. (68a890dd3)

CCTBX commit

Thu, 28 Jun 2018 13:28:33 -0700

283 lines

[git/cctbx] master: Allow ignore_symmetry_conflicts (788f6ba5c)

CCTBX commit

Thu, 28 Jun 2018 09:35:56 -0600

147 lines

[git/cctbx] master: Gain lookup for Bruker Photon II (0339202dd)

CCTBX commit

Thu, 28 Jun 2018 11:58:18 +0100

155 lines

[git/cctbx] master: Remove clutter added with cruft (d968573bf)

CCTBX commit

Thu, 28 Jun 2018 06:41:32 +0100

59 lines

[git/cctbx] master: Remove cruft from comments, add more cruft which is more relevent to matter in hand (2fac5f605)

CCTBX commit

Thu, 28 Jun 2018 06:41:14 +0100

129 lines

[git/cctbx] master: more control (85df9fad4)

CCTBX commit

Wed, 27 Jun 2018 17:41:31 -0700

243 lines

[git/cctbx] master: added GLR test to external Bot (70ec5a711)

CCTBX commit

Wed, 27 Jun 2018 17:37:18 -0700

96 lines

[git/cctbx] master: Add try except. (ea13cc9eb)

CCTBX commit

Wed, 27 Jun 2018 15:45:19 -0700

82 lines

[git/cctbx] master: bugfix (ffd5435f8)

CCTBX commit

Wed, 27 Jun 2018 11:27:37 -0700

86 lines

[git/cctbx] master: Comment on special cases (b4bd1aca9)

CCTBX commit

Wed, 27 Jun 2018 11:25:43 +0100

90 lines

[git/cctbx] master: Putative support for E-32-0105 instrument with vertical axis at Max IV: overrides default based on serial number key (66a61bad3)

CCTBX commit

Wed, 27 Jun 2018 05:42:18 +0100

124 lines

[git/cctbx] master: more output and control (0c18395f8)

CCTBX commit

Tue, 26 Jun 2018 17:34:02 -0700

436 lines

[git/cctbx] master: use shifted hierarchy when needed in mmcif output. (be08338fb)

CCTBX commit

Tue, 26 Jun 2018 12:53:00 -0700

173 lines

[git/cctbx] master: Arnaud no longer needs this now that FormatBrukerPhotonII is working better than before (#65) (f9c12e36b)

CCTBX commit

Tue, 26 Jun 2018 15:54:19 +0100

337 lines

[git/cctbx] master: Multi-axis goniometer for FormatSMVRigakuEiger; requested by A. Foerster (e581fe156)

CCTBX commit

Tue, 26 Jun 2018 11:27:57 +0100

226 lines

[git/cctbx] master: implementation of setWindow for multi-tile generic_flex_image (closes #216) (416cff16d)

CCTBX commit

Tue, 26 Jun 2018 10:44:35 +0100

274 lines

[git/cctbx] master: tracker update (bc4bdf79d)

CCTBX commit

Mon, 25 Jun 2018 18:50:09 -0700

272 lines

[git/cctbx] master: Bug fix for phenix_regression/mmtbx/geometry_minimization/tst_13.py. (666f100f6)

CCTBX commit

Mon, 25 Jun 2018 16:46:37 -0700

105 lines

[git/cctbx] master: minor printout changes (c1ff16d26)

CCTBX commit

Mon, 25 Jun 2018 09:54:46 -0600

170 lines

[git/cctbx] master: Bug fixes to add to 142748df (e590b5214)

CCTBX commit

Mon, 25 Jun 2018 16:40:21 +0100

110 lines

[git/cctbx] master: This is a scintillator-based detector, no QE or parallax correction used here (8e4e9b88e)

CCTBX commit

Mon, 25 Jun 2018 16:18:02 +0100

94 lines

[git/cctbx] master: Improve recognition of full CBF Bruker Photon II images. Detector and goniometer axes are still not correct. These cannot use imgCIF_H methods of the dxtbx factories because the Bruker full CBF format does not adhere to conventions expected there. (5d8022522)

CCTBX commit

Mon, 25 Jun 2018 16:08:25 +0100

157 lines

[git/cctbx] master: Use builting jpeg when compiling wxWidgets (a0ca7411f)

CCTBX commit

Mon, 25 Jun 2018 12:05:55 +0100

115 lines

[git/cctbx] master: exposing a parameter for tweaking (0b6f020a1)

CCTBX commit

Fri, 22 Jun 2018 17:12:41 -0700

133 lines

[git/cctbx] master: tracker update (5138eab1d)

CCTBX commit

Fri, 22 Jun 2018 13:55:30 -0700

689 lines

[git/cctbx] master: Bugfix for sdfac_refine and dev.cxi.merge_refltable using cxi.xmerge (7c277845b)

CCTBX commit

Fri, 22 Jun 2018 11:44:36 -0700

154 lines

[git/cctbx] master: Add missing checksum items to dev.cxi.merge_refltable (afd52fdc1)

CCTBX commit

Fri, 22 Jun 2018 11:42:24 -0700

114 lines

[git/cctbx] master: Fix #215, handling check_format=False for sweeps (59f0fe499)

CCTBX commit

Fri, 22 Jun 2018 11:29:51 -0700

96 lines

[git/cctbx] master: clashscore: handle probe path with spaces (200012dad)

CCTBX commit

Fri, 22 Jun 2018 11:07:44 -0700

86 lines

[git/cctbx] master: this control such be higher up (45143166f)

CCTBX commit

Thu, 21 Jun 2018 09:58:37 -0700

84 lines

[git/cctbx] master: Remove useless (and dangerous) format class (b22b29e6c)

CCTBX commit

Thu, 21 Jun 2018 15:34:13 +0100

411 lines

[git/cctbx] master: tracker bug fix (3e68ba5ce)

CCTBX commit

Wed, 20 Jun 2018 16:45:43 -0700

154 lines

[git/cctbx] master: Image tracker update (2b4c17db0)

CCTBX commit

Wed, 20 Jun 2018 14:11:58 -0700

115 lines

[git/cctbx] master: Image tracker update (53f45d5dc)

CCTBX commit

Wed, 20 Jun 2018 14:03:26 -0700

1740 lines

[git/cctbx] master: Fix split datablocks not being deserialized correctly (#203) (86cd29c7b)

CCTBX commit

Wed, 20 Jun 2018 11:42:26 -0700

216 lines

[git/cctbx] master: Set parallax correction and mu for Eiger CBF and SMVRigaku (as per A. Foerster's request) (142748df8)

CCTBX commit

Wed, 20 Jun 2018 15:59:53 +0100

149 lines

[git/cctbx] master: Make interface for DetectorFactory.complex consistent with that for DetectorFactory.simple (c510d1576)

CCTBX commit

Wed, 20 Jun 2018 15:59:53 +0100

152 lines

[git/cctbx] master: Temporarily revert "Add an C++17-style allocator model to array_family" (b7c8da618)

CCTBX commit

Wed, 20 Jun 2018 15:26:43 +0100

120 lines

[git/cctbx] master: Reduce code dulication by collapsing two more almost identical formats into one. (3923e0d77)

CCTBX commit

Wed, 20 Jun 2018 13:22:14 +0100

1374 lines

[git/cctbx] master: No need for code duplication in FormatSMVRigakuEiger*M.py. Combine into a single FormatSMVRigakuEiger.py. As pointed out by Andreas Foerster. (aa9052b72)

CCTBX commit

Wed, 20 Jun 2018 12:41:42 +0100

1396 lines

[git/cctbx] master: Make handling of sensor material consistent between FormatCBFMini and FormatCBFMiniEiger, enabling CdTe properly (issue reported by Andreas Foerster) (2c2eb5dd3)

CCTBX commit

Wed, 20 Jun 2018 12:38:26 +0100

208 lines

[git/cctbx] master: Fixing test, unused import (f4e1bb62d)

CCTBX commit

Tue, 19 Jun 2018 17:23:18 -0700

128 lines

[git/cctbx] master: Proper params adjustment (d4dc4209b)

CCTBX commit

Tue, 19 Jun 2018 17:09:50 -0700

111 lines

[git/cctbx] master: Removing obsolete functionality (180c9ea5f)

CCTBX commit

Tue, 19 Jun 2018 17:09:50 -0700

197 lines

[git/cctbx] master: Turn on Cablam statistics output. (4fae6fa8a)

CCTBX commit

Tue, 19 Jun 2018 17:09:50 -0700

235 lines

[git/cctbx] master: wxtbx: make base info_panel scrollable (d5869489e)

CCTBX commit

Tue, 19 Jun 2018 16:29:25 -0700

110 lines

[git/cctbx] master: fix mistake in setting symmetry (02c36d89c)

CCTBX commit

Tue, 19 Jun 2018 15:59:57 -0700

94 lines

[git/cctbx] master: wxtbx: add basic display to info panel (aa3614b37)

CCTBX commit

Tue, 19 Jun 2018 15:35:47 -0700

106 lines

[git/cctbx] master: Make sure the cmd didn't ended with a crash. (bf558ecfd)

CCTBX commit

Tue, 19 Jun 2018 15:26:43 -0700

84 lines

[git/cctbx] master: Correcting Sorry message, because there's no way to set this parameter to None in GUI. (02661e2bb)

CCTBX commit

Tue, 19 Jun 2018 15:11:09 -0700

90 lines

[git/cctbx] master: minor changes to extract_unique (6adaf90d6)

CCTBX commit

Tue, 19 Jun 2018 15:37:54 -0600

286 lines

[git/cctbx] master: libtbx.find_clutter: can now specify files that should be ignored using .clutterignore (65958bdb9)

CCTBX commit

Tue, 19 Jun 2018 12:58:53 -0700

145 lines

[git/cctbx] master: Fix mistake in order of setting values (d13fc6071)

CCTBX commit

Tue, 19 Jun 2018 12:56:14 -0600

127 lines

[git/cctbx] master: Fix printout to out not sys.stdout (f041c2183)

CCTBX commit

Tue, 19 Jun 2018 08:55:53 -0600

151 lines

[git/cctbx] master: Fix missing method (2395d3404)

CCTBX commit

Tue, 19 Jun 2018 08:47:32 -0600

93 lines

[git/cctbx] master: Edit map_to_structure_factors so it can work for maps that are not a full unit cell by creating a new unit cell and grid (4435803d8)

CCTBX commit

Mon, 18 Jun 2018 18:19:13 -0600

215 lines

[git/cctbx] master: Put back mtz file as default output but turn it off if not available. Easier for users (06d33569d)

CCTBX commit

Mon, 18 Jun 2018 16:18:51 -0600

171 lines

[git/cctbx] master: Set keep_input_unit_cell_and_grid = True as default in map_box. This will temporarily require users to say ignore_symmetry_conflicts=True in map_model_cc and real_space_refine if they cut out a piece of density and work with it (c8081a0b6)

CCTBX commit

Mon, 18 Jun 2018 13:23:42 -0700

146 lines

[git/cctbx] master: adding cablam idealization to model idealization (46eb6bdd0)

CCTBX commit

Mon, 18 Jun 2018 12:31:09 -0700

228 lines

[git/cctbx] master: remove xplor and mtz as default output for map_box as these are not going to be written for partial cells later (e03c64479)

CCTBX commit

Mon, 18 Jun 2018 12:30:02 -0600

90 lines

[git/cctbx] master: Update standalone run stats plotter to report high res cutoff (ce4ab1991)

CCTBX commit

Mon, 18 Jun 2018 10:04:12 -0700

306 lines

[git/cctbx] master: Fix typo and clarify output (6a797e7fd)

CCTBX commit

Mon, 18 Jun 2018 09:58:22 -0600

176 lines

[git/cctbx] master: Explain what lower and upper bounds mean (aac2f3329)

CCTBX commit

Sun, 17 Jun 2018 16:44:43 -0700

109 lines

[git/cctbx] master: clean clutter (9fd0214d4)

CCTBX commit

Sat, 16 Jun 2018 21:41:48 -0600

58 lines

[git/cctbx] master: Add keyword to allow map_box to write out map with same unit cell and unit cell grid as input map while keeping only part of the map. Default is False for now (0443b1a7d)

CCTBX commit

Sat, 16 Jun 2018 21:18:57 -0600

227 lines

[git/cctbx] master: clean clutter (80ad7fd56)

CCTBX commit

Sat, 16 Jun 2018 13:48:51 -0600

94 lines

[git/cctbx] master: Make map have both >0 and <0 so header bug of min always <=0 does not affect test (d5a80bdab)

CCTBX commit

Sat, 16 Jun 2018 13:24:06 -0600

125 lines

[git/cctbx] master: clean clutter (a35258ce2)

CCTBX commit

Sat, 16 Jun 2018 13:15:37 -0600

58 lines

[git/cctbx] master: Make test generate its own data (0f92f2538)

CCTBX commit

Sat, 16 Jun 2018 13:14:44 -0600

336 lines

[git/cctbx] master: Fix help messages (bc6fb4519)

CCTBX commit

Sat, 16 Jun 2018 11:11:46 -0600

122 lines

[git/cctbx] master: Add test to ccp4_map/tst.py for setting output grid (697e0f86a)

CCTBX commit

Sat, 16 Jun 2018 11:07:44 -0600

147 lines

[git/cctbx] master: clean clutter (27c0ddc87)

CCTBX commit

Fri, 15 Jun 2018 21:28:55 -0600

105 lines

[git/cctbx] master: Allow setting output unit cell and grid when writing output ccp4 map files in map_box (12b61d5cc)

CCTBX commit

Fri, 15 Jun 2018 20:15:35 -0700

686 lines

[git/cctbx] master: making cablam_idealization NCS-aware. (19c250e06)

CCTBX commit

Fri, 15 Jun 2018 16:05:22 -0700

191 lines

[git/cctbx] master: function to search ncs. Better multiplying ncs coords. (60fb24c42)

CCTBX commit

Fri, 15 Jun 2018 16:05:22 -0700

188 lines

[git/cctbx] master: proper output of phil params (197431e77)

CCTBX commit

Fri, 15 Jun 2018 16:05:22 -0700

140 lines

[git/cctbx] master: clean clutter (5df72738e)

CCTBX commit

Fri, 15 Jun 2018 14:47:40 -0700

58 lines

[git/cctbx] master: allow ignore_symmetry_conflicts=True and allow setting grid in write_ccp4_map (cd8ad24d0)

CCTBX commit

Fri, 15 Jun 2018 14:39:51 -0700

377 lines

Jenkins CCTBX Branch Tests branch origin/split_datablock Unstable

DLS Jenkins

Fri, 15 Jun 2018 21:42:06 +0100

130 lines

[git/cctbx] master: Promote out of dev status, but retain original dispatcher. (22a0aceb3)

CCTBX commit

Thu, 14 Jun 2018 17:23:15 -0700

82 lines

[git/cctbx] master: IOTA DIALS stills processor bugfixes (3bac14dd8)

CCTBX commit

Thu, 14 Jun 2018 16:37:49 -0700

453 lines

[git/cctbx] master: Fix indexing ambiguity bug in prime (ad879f692)

CCTBX commit

Thu, 14 Jun 2018 16:12:01 -0700

118 lines

[git/cctbx] master: Handle probe not being configured for mmtbx tests. (03b00b6aa)

CCTBX commit

Thu, 14 Jun 2018 15:12:37 -0700

429 lines

[git/cctbx] master: Bugfixes (a43fc9a3a)

CCTBX commit

Thu, 14 Jun 2018 12:00:26 -0700

219 lines

[git/cctbx] master: cosmetic changes. Default value that hints the type of variable. (1bf064295)

CCTBX commit

Thu, 14 Jun 2018 11:27:07 -0700

120 lines

[git/cctbx] master: Fix 5+ year old FIXME. (324eb287e)

CCTBX commit

Thu, 14 Jun 2018 13:38:32 +0100

90 lines

[git/cctbx] master: Format change following suggestion in #206, reopening that ticket for comments. (3bfbbefba)

CCTBX commit

Thu, 14 Jun 2018 10:48:30 +0100

113 lines

[git/cctbx] master: VS 2008: unify usage of headers in msvc9.0_include (907de7fc7)

CCTBX commit

Wed, 13 Jun 2018 21:09:03 -0700

151 lines

[git/cctbx] master: IOTA DIALS stills processor update (1e68f5bb9)

CCTBX commit

Wed, 13 Jun 2018 17:50:18 -0700

819 lines

[git/cctbx] master: CC (aa7107437)

CCTBX commit

Wed, 13 Jun 2018 16:52:44 -0700

84 lines

[git/cctbx] master: Speedup for big models (7eda76cc1)

CCTBX commit

Wed, 13 Jun 2018 16:43:30 -0700

169 lines

[git/cctbx] master: clean clutter (96dff92dd)

CCTBX commit

Wed, 13 Jun 2018 15:42:42 -0700

61 lines

[git/cctbx] master: Allow use of keyword ignore_symmetry_from_coordinate_files=True in map_model_cc. Add keyword output_origin_grid_units in map_box. Add keyword ignore_symmetry_from_coordinate_files in check_and_set_crystal_symmetry in mtriage. Add keyword force=None in set_crystal_symmetry_if_undefined allowing setting of crystal symmetry even if it is defined. (a2e961870)

CCTBX commit

Wed, 13 Jun 2018 15:35:02 -0700

1002 lines

[git/cctbx] master: added generic molprobity. versions to the list of dispatcher names for all molprobity tools (6df16493b)

CCTBX commit

Wed, 13 Jun 2018 16:11:53 -0400

244 lines

[git/cctbx] master: safeguarding against missing atoms (fa862dc7a)

CCTBX commit

Wed, 13 Jun 2018 12:17:24 -0700

121 lines

[git/cctbx] master: Skipping AC (cd6d31b7a)

CCTBX commit

Wed, 13 Jun 2018 11:33:41 -0700

96 lines

[git/cctbx] master: bugfix (9cac51262)

CCTBX commit

Wed, 13 Jun 2018 10:49:45 -0700

122 lines

[git/cctbx] master: bugfix (7e1ea506a)

CCTBX commit

Wed, 13 Jun 2018 10:14:12 -0700

155 lines

[git/cctbx] master: Unbreak test dxtbx.print_header labelit_regression/detectors/200mMNaCl5pcGlyc_400.edf (e58dbf82f)

CCTBX commit

Wed, 13 Jun 2018 09:49:41 -0700

104 lines

[git/cctbx] master: Allow mtz file to be used as a scaling reference, even if Miller indices are missing. (5c16b27ad)

CCTBX commit

Wed, 13 Jun 2018 09:04:41 -0700

146 lines

[git/cctbx] master: Scans have positive 'oscillation' angle. Fixes #206 (492d72674)

CCTBX commit

Wed, 13 Jun 2018 15:02:08 +0100

166 lines

[git/cctbx] master: Missing import (d2497847a)

CCTBX commit

Wed, 13 Jun 2018 15:02:08 +0100

84 lines

[git/cctbx] master: Fix bug in segment_and_split where a sequence of A was used for protein volume but was interpreted as DNA (3922e0943)

CCTBX commit

Wed, 13 Jun 2018 07:25:15 -0600

373 lines

[git/cctbx] master: Now sure it is necessary (0f038a0a8)

CCTBX commit

Wed, 13 Jun 2018 15:59:39 +0800

89 lines

[git/cctbx] master: Revert "Handle missing indices in reference mtz in cxi.merge" (8712798d7)

CCTBX commit

Tue, 12 Jun 2018 20:56:53 -0700

115 lines

[git/cctbx] master: tracker updates (7a79780b1)

CCTBX commit

Tue, 12 Jun 2018 18:03:57 -0700

768 lines

[git/cctbx] master: Speed optimization (d49d97bd9)

CCTBX commit

Tue, 12 Jun 2018 17:59:59 -0700

322 lines

[git/cctbx] master: Update allocation code in response to feedback (43eeebc71)

CCTBX commit

Tue, 12 Jun 2018 17:57:26 -0700

2264 lines

[git/cctbx] master: Add an C++17-style allocator model to array_family (50298f07d)

CCTBX commit

Tue, 12 Jun 2018 17:57:26 -0700

201 lines

[git/cctbx] master: Removing debugging model output. More meaningful output. (a5e56d166)

CCTBX commit

Tue, 12 Jun 2018 16:28:13 -0700

194 lines

[git/cctbx] master: Enable working with insertion codes. With test. (ef6921f78)

CCTBX commit

Tue, 12 Jun 2018 16:28:13 -0700

1091 lines

[git/cctbx] master: Activate include_mask option in mtriage (9cb8c5237)

CCTBX commit

Tue, 12 Jun 2018 16:16:52 -0700

152 lines

[git/cctbx] master: Add extra parameters to cxi.brehm_diederichs. (26d740b7e)

CCTBX commit

Tue, 12 Jun 2018 16:06:47 -0700

157 lines

[git/cctbx] master: Handle missing indices in reference mtz in cxi.merge (429a2530f)

CCTBX commit

Tue, 12 Jun 2018 16:06:47 -0700

111 lines

[git/cctbx] master: cxi.xmerge include_negatives fix (7be74ff6d)

CCTBX commit

Tue, 12 Jun 2018 16:06:13 -0700

290 lines

[git/cctbx] master: Delete deprecated files (2f4df09c0)

CCTBX commit

Tue, 12 Jun 2018 15:31:44 -0700

79 lines

[git/cctbx] master: Handle empty integration results in cxi.merge (6f27a06c4)

CCTBX commit

Tue, 12 Jun 2018 15:26:02 -0700

94 lines

[git/cctbx] master: clean clutter (c073a867f)

CCTBX commit

Tue, 12 Jun 2018 12:48:44 -0600

58 lines

[git/cctbx] master: Return chain_type=PROTEIN if sequence is AAAAAAAA (25afc2fbe)

CCTBX commit

Tue, 12 Jun 2018 12:38:37 -0600

214 lines

[git/cctbx] master: Building the Boost filesystem library for Phaser on behalf of Airlie and Billy, (f49cf4614)

CCTBX commit

Tue, 12 Jun 2018 17:42:20 +0100

144 lines

[git/cctbx] master: Add --border option to cxi.make_dials_mask (ced9df28b)

CCTBX commit

Mon, 11 Jun 2018 16:52:20 -0700

183 lines

[git/cctbx] master: Unbreak xtc_process for cspad (246aea71c)

CCTBX commit

Mon, 11 Jun 2018 15:28:09 -0700

100 lines

[git/cctbx] master: Moving model_from_sites_cart to be a classmethod of mmtbx.model.manager. Moving test to more appropriate place. Marking previous implementation for deletion. (93f8f95c3)

CCTBX commit

Mon, 11 Jun 2018 11:29:47 -0700

526 lines

[git/cctbx] master: Handle bad pickles (777d27255)

CCTBX commit

Mon, 11 Jun 2018 09:57:26 -0700

85 lines

[git/cctbx] master: clean clutter and set serial (2ccf9c66d)

CCTBX commit

Mon, 11 Jun 2018 08:50:07 -0600

241 lines

[git/cctbx] master: clean clutter and minor changes (410a9cd7a)

CCTBX commit

Mon, 11 Jun 2018 08:45:44 -0600

112 lines

[git/cctbx] master: Add tool to create model.manager from sites_cart (dc074e399)

CCTBX commit

Mon, 11 Jun 2018 08:22:01 -0600

307 lines

[git/cctbx] master: DIALS and LABELIT support for MiniCBF-formatted images from BioMAX MaxIV Eiger 16M serial number 105 (4d2e0467d)

CCTBX commit

Sun, 10 Jun 2018 11:41:06 -0700

206 lines

[git/cctbx] master: clean clutter (1dc508190)

CCTBX commit

Sat, 9 Jun 2018 20:13:06 -0600

60 lines

[git/cctbx] master: minor addition to map_to_structure_factors to allow call from python and get f_obs; add local_overlap_map to miller/__init__.py and test for it to tst_miller.py; allow setting atom types in generating dummy pdb file in segment_and_split_map (beae3d076)

CCTBX commit

Sat, 9 Jun 2018 19:04:08 -0700

685 lines

[git/cctbx] master: Take in Cablam contours to allow optimization when hundreds evaluations are needed. (49b15c2ad)

CCTBX commit

Fri, 8 Jun 2018 17:46:56 -0700

236 lines

[git/cctbx] master: Speeding up further. (bf19289a5)

CCTBX commit

Fri, 8 Jun 2018 17:46:56 -0700

199 lines

[git/cctbx] master: dxtbx.radial_average: add resolution option for x axis and panel option to only average one panel (582594302)

CCTBX commit

Fri, 8 Jun 2018 16:52:03 -0700

194 lines

[git/cctbx] master: safeguarding agains probe absence, clutter (463ccb658)

CCTBX commit

Fri, 8 Jun 2018 11:35:09 -0700

213 lines

[git/cctbx] master: Alpha-version of cablam_idealization with tests. Features: - Fix only those outliers where rotation of oxygen results in H-bond - option to do geometry minimization at the end - option to reevaluate SS after cablam fixes - extensive log output for further development and result analysis (d823e7df8)

CCTBX commit

Fri, 8 Jun 2018 11:01:15 -0700

2449 lines

[git/cctbx] master: Skip h5py for the cctbxlite builder (c26a4e293)

CCTBX commit

Fri, 8 Jun 2018 10:08:54 -0700

96 lines

[git/cctbx] master: Enable compilation of boost::numpy on Windows (aeec03e76)

CCTBX commit

Thu, 7 Jun 2018 23:43:49 -0700

241 lines

[git/cctbx] master: Allow plotting all experiments in a single histogram. (a8542fc36)

CCTBX commit

Fri, 8 Jun 2018 13:48:43 +0900

148 lines

[git/cctbx] master: Update filesystem version of the run stats plotter. (0bf795457)

CCTBX commit

Fri, 8 Jun 2018 12:31:31 +0900

271 lines

[git/cctbx] master: Smarter process_percent spreads out events evenly. (9786ea1e1)

CCTBX commit

Fri, 8 Jun 2018 12:01:38 +0900

134 lines

[git/cctbx] master: XFEL GUI: plot resolution on the RunStats tab (87391388c)

CCTBX commit

Fri, 8 Jun 2018 11:59:22 +0900

667 lines

[git/cctbx] master: Bugfix (ca86f92ad)

CCTBX commit

Fri, 8 Jun 2018 11:55:47 +0900

86 lines

[git/cctbx] master: bugfix (d0d61342b)

CCTBX commit

Fri, 8 Jun 2018 09:22:41 +0900

113 lines

[git/cctbx] master: Move some imports to other function (1edf3357b)

CCTBX commit

Thu, 7 Jun 2018 17:18:36 -0700

110 lines

[git/cctbx] master: Allow rotarama cache rebuild to fail on Python3 (86f60a200)

CCTBX commit

Thu, 7 Jun 2018 17:18:36 -0700

239 lines

[git/cctbx] master: kinemage: call probe and reduce with path instead of dispatcher (cfef6e76e)

CCTBX commit

Thu, 7 Jun 2018 16:34:16 -0700

135 lines

[git/cctbx] master: Add test for split datablocks. Test is marked as expected to fail. (daf39d27a)

CCTBX commit

Thu, 7 Jun 2018 11:14:42 -0700

165 lines

[git/cctbx] master: remove labelit dependency from cctbx.crystal_orientation.constrain() (b357ae230)

CCTBX commit

Thu, 7 Jun 2018 11:40:05 +0100

93 lines

[git/cctbx] master: remove labelit dependency (b3e3adc55)

CCTBX commit

Thu, 7 Jun 2018 11:40:05 +0100

104 lines

[git/cctbx] master: Add model id to map_model_cc object. (2fe35c43e)

CCTBX commit

Wed, 6 Jun 2018 10:24:40 -0700

89 lines

[git/cctbx] master: Added a further link to dxtbx README.md. (a05eaae64)

CCTBX commit

Wed, 6 Jun 2018 16:33:58 +0100

98 lines

[git/cctbx] master: Rewrote readme.txt as README.md, with markdown and a link to the J Appl Cryst paper. (f3f9caa42)

CCTBX commit

Wed, 6 Jun 2018 12:06:41 +0100

159 lines

[git/cctbx] master: this file is used in phenix_regression (2de5aa5ba)

CCTBX commit

Tue, 5 Jun 2018 16:54:19 -0700

1077 lines

[git/cctbx] master: fixed more clutter (c7a378437)

CCTBX commit

Tue, 5 Jun 2018 11:05:59 -0700

58 lines

[git/cctbx] master: fix check on origin_frac (8e753d5c3)

CCTBX commit

Tue, 5 Jun 2018 10:47:37 -0700

91 lines

[git/cctbx] master: bugfixes and declutter (f2b6b59a9)

CCTBX commit

Mon, 4 Jun 2018 16:23:16 -0700

81 lines

[git/cctbx] master: image tracking updates (dfaf0213a)

CCTBX commit

Mon, 4 Jun 2018 16:14:06 -0700

882 lines

[git/cctbx] master: Refactor FormatXTC and derived classes to remove class variables _src and _img (861be7efb)

CCTBX commit

Mon, 4 Jun 2018 09:00:09 -0700

843 lines

[git/cctbx] master: Tweak png output for detector_residuals (253ceff00)

CCTBX commit

Mon, 4 Jun 2018 08:50:42 -0700

90 lines

[git/cctbx] master: Handle datablocks and experiment lists in dxtbx.radial_average (238208bb9)

CCTBX commit

Mon, 4 Jun 2018 08:47:39 -0700

132 lines

[git/cctbx] master: Copy into iotbx namespace for dispatcher (used to be here?) (4de5e7f82)

CCTBX commit

Mon, 4 Jun 2018 12:01:49 +0100

78 lines

[git/cctbx] master: add miller.array.intensity_quasi_normalisations(). This really needs a test (as does existing miller.array.amplitude_quasi_normalisations() (57b0842a5)

CCTBX commit

Mon, 4 Jun 2018 10:52:27 +0100

158 lines

[git/cctbx] master: Fix entry point dispatcher source (6b591d134)

CCTBX commit

Mon, 4 Jun 2018 10:37:32 +0100

93 lines

[git/cctbx] master: here clean_clutter is decidedly not useful (7ae950c1e)

CCTBX commit

Mon, 4 Jun 2018 10:19:10 +0100

68 lines

[git/cctbx] master: Fix Windows build for MSVC 12 (f8972f644)

CCTBX commit

Mon, 4 Jun 2018 10:06:09 +0100

607 lines

Jenkins CCTBX Branch Tests branch origin/windows-fix Failure

DLS Jenkins

Sun, 3 Jun 2018 16:04:00 +0100

260 lines

Jenkins CCTBX Branch Tests branch origin/windows-fix Still Failing

DLS Jenkins

Sun, 3 Jun 2018 15:44:00 +0100

267 lines

Jenkins CCTBX Branch Tests branch origin/windows-fix Still Failing

DLS Jenkins

Sun, 3 Jun 2018 15:42:01 +0100

264 lines

Jenkins CCTBX Branch Tests branch origin/windows-fix Failure

DLS Jenkins

Sun, 3 Jun 2018 15:32:57 +0100

257 lines

Jenkins CCTBX Branch Tests branch origin/windows-fix Still unstable

DLS Jenkins

Sun, 3 Jun 2018 15:27:25 +0100

50 lines

Jenkins CCTBX Branch Tests branch origin/windows-fix Failure

DLS Jenkins

Sun, 3 Jun 2018 15:09:46 +0100

168 lines

Jenkins CCTBX Branch Tests branch origin/windows-fix Still Unstable

DLS Jenkins

Sun, 3 Jun 2018 15:07:25 +0100

46 lines

Jenkins CCTBX Branch Tests branch origin/windows-fix Still Unstable

DLS Jenkins

Sat, 2 Jun 2018 12:51:51 +0100

43 lines

Jenkins CCTBX Branch Tests branch origin/windows-fix Still Unstable

DLS Jenkins

Sat, 2 Jun 2018 12:08:59 +0100

42 lines

Jenkins CCTBX Branch Tests branch origin/windows-fix Unstable

DLS Jenkins

Sat, 2 Jun 2018 12:06:09 +0100

38 lines

[git/cctbx] master: Citations: add citations from program templates to documentation (ad6bc275f)

CCTBX commit

Fri, 1 Jun 2018 17:03:41 -0700

217 lines

[git/cctbx] master: Citations: add citation for autosharpen (5528b3ef1)

CCTBX commit

Fri, 1 Jun 2018 17:02:22 -0700

96 lines

Jenkins CCTBX Branch Tests branch origin/windows-fix Unstable

DLS Jenkins

Sat, 2 Jun 2018 00:33:23 +0100

39 lines

Jenkins CCTBX Branch Tests branch origin/windows-fix Unstable

DLS Jenkins

Fri, 1 Jun 2018 22:50:10 +0100

38 lines

[git/cctbx] master: more clutter cleanup (d964fa73d)

CCTBX commit

Fri, 1 Jun 2018 09:28:34 -0700

79 lines

[git/cctbx] master: declutter (9fc7a5c36)

CCTBX commit

Fri, 1 Jun 2018 08:46:45 -0700

86 lines

[git/cctbx] master: placate find_clutter: it's not even an import (291861e92)

CCTBX commit

Fri, 1 Jun 2018 13:34:42 +0100

74 lines

[git/cctbx] master: placate buildbot (f1e86762e)

CCTBX commit

Fri, 1 Jun 2018 12:29:57 +0100

65 lines

Jenkins 5a cctbx Tests build 6700 Fixed

DLS Jenkins

Fri, 1 Jun 2018 11:28:04 +0100

38 lines

[git/cctbx] master: caught out by last minute typos (a8aece28b)

CCTBX commit

Fri, 1 Jun 2018 11:10:22 +0100

89 lines

Jenkins 5a cctbx Tests build 6699 Still Failing

DLS Jenkins

Fri, 1 Jun 2018 11:09:02 +0100

178 lines

Jenkins 5a cctbx Tests build 6698 Failure

DLS Jenkins

Fri, 1 Jun 2018 11:06:38 +0100

174 lines

[git/cctbx] master: caught out by last minute typo (1a8501e14)

CCTBX commit

Fri, 1 Jun 2018 11:06:16 +0100

80 lines

[git/cctbx] master: Generate libtbx.* wrappers from correct directory (ad736e2c8)

CCTBX commit

Fri, 1 Jun 2018 11:01:08 +0100

556 lines

[git/cctbx] master: IOTA single image processor (cd3cf4e88)

CCTBX commit

Thu, 31 May 2018 17:07:48 -0700

691 lines

[git/cctbx] master: Customized output stream to capture the print_pixel output for nks-specialized function. Will break existing Python code, but workaround exists to provide a dummy StringIO() stream. (a64a1db38)

CCTBX commit

Thu, 31 May 2018 14:35:11 -0700

226 lines

JiscMail Tools


RSS Feeds and Sharing


Advanced Options


Archives

May 2024
April 2024
March 2024
February 2024
January 2024
December 2023
November 2023
October 2023
September 2023
August 2023
July 2023
June 2023
May 2023
April 2023
March 2023
February 2023
January 2023
December 2022
November 2022
October 2022
September 2022
August 2022
July 2022
June 2022
May 2022
April 2022
March 2022
February 2022
January 2022
December 2021
November 2021
October 2021
September 2021
August 2021
July 2021
June 2021
May 2021
April 2021
March 2021
February 2021
January 2021
December 2020
November 2020
October 2020
September 2020
August 2020
July 2020
June 2020
May 2020
April 2020
March 2020
February 2020
January 2020
December 2019
November 2019
October 2019
September 2019
August 2019
July 2019
June 2019
May 2019
April 2019
March 2019
February 2019
January 2019
December 2018
November 2018
October 2018
September 2018
August 2018
July 2018
June 2018
May 2018
April 2018
March 2018
February 2018
January 2018
December 2017
November 2017
October 2017
September 2017
August 2017
July 2017
June 2017
May 2017
April 2017
March 2017
February 2017
January 2017
December 2016
November 2016


JiscMail is a Jisc service.

View our service policies at https://www.jiscmail.ac.uk/policyandsecurity/ and Jisc's privacy policy at https://www.jisc.ac.uk/website/privacy-notice

For help and support help@jisc.ac.uk

Secured by F-Secure Anti-Virus CataList Email List Search Powered by the LISTSERV Email List Manager