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Subject	From	Date	Size
[git/cctbx_project] master: Divide add_colour_map_radii_power_to_dict() into separate functions to avoid GUI error (1df2f1e558)	CCTBX commit	Thu, 31 Mar 2022 18:27:11 +0100	1140 lines
[git/dxtbx] main: DIALS 3.9.1 Changelog (a383d058)	DXTBX commit	Thu, 31 Mar 2022 15:22:52 +0100	110 lines
[git/cctbx_project] master: Support viewer.show_vector as multiple PHIL parameter. Allow specifying vectors by label as well as number in list of vectors (de1c34c339)	CCTBX commit	Thu, 31 Mar 2022 11:37:14 +0100	933 lines
[git/cctbx_project] master: Specify PHIL parameter clip_plane.normal_vector as a label rather than an index (be168a3010)	CCTBX commit	Thu, 31 Mar 2022 11:37:14 +0100	586 lines
[git/cctbx_project] master: libtbx: add option for resolving symbolic links to relocatable_path (15e32cc7f6)	CCTBX commit	Wed, 30 Mar 2022 14:56:05 -0700	240 lines
[git/cctbx_project] master: CI: Add kokkos and its simtbx/LS49 tests to Azure build (#728) (03272ebd6e)	CCTBX commit	Wed, 30 Mar 2022 13:50:24 -0700	309 lines
[git/cctbx_project] master: Add warning (329763ddb0)	CCTBX commit	Wed, 30 Mar 2022 11:46:08 -0700	134 lines
[git/dxtbx] main: Windows support for the CMake build (#507) (dbbd9f17)	DXTBX commit	Wed, 30 Mar 2022 10:36:27 +0100	896 lines
[git/cctbx_project] master: Warning messagebox before resetting to factory defaults. Map label of vectors to element number in list of vectors as to make them easier to specify in PHIL script for preset-buttons (498815a4f6)	CCTBX commit	Tue, 29 Mar 2022 23:35:56 +0100	392 lines
[git/cctbx_project] master: changing 'U ION' to 'U U' (466bd62b77)	CCTBX commit	Tue, 29 Mar 2022 13:15:56 -0700	472 lines
[git/cctbx_project] master: Allow as_string for sequence of chain (57e6037e7d)	CCTBX commit	Tue, 29 Mar 2022 12:53:39 -0700	138 lines
[git/cctbx_project] master: show what's different (4a5067bdaf)	CCTBX commit	Tue, 29 Mar 2022 11:34:17 -0700	117 lines
[git/cctbx_project] master: Bump up tolerance (0.3->0.4) to allow tests passing on different platforms (ec4793fec8)	CCTBX commit	Tue, 29 Mar 2022 10:58:40 -0700	110 lines
[git/cctbx_project] master: Now using phil definition of viewer.show_vector to .multiple = True (09289e93dd)	CCTBX commit	Tue, 29 Mar 2022 18:35:26 +0100	352 lines
[git/cctbx_project] master: Improve speed and simplify ConstructReciprocalSpace() and MakeHKLscene() by avoiding computing cached scenes when loading files (2dca8f7c95)	CCTBX commit	Tue, 29 Mar 2022 18:35:25 +0100	1584 lines
[git/dxtbx] main: Remove FormatEigerStream (#499) (f8146eed)	DXTBX commit	Mon, 28 Mar 2022 14:05:50 +0000	560 lines
[git/dxtbx] main: Recognise DIAD beamline in FormatNXmx (#506) (616b6908)	DXTBX commit	Mon, 28 Mar 2022 13:50:13 +0000	977 lines
[git/cctbx_project] master: Riding H: keyword for ignoring parameterizing H with dof. Plus test. (9c10f0dcb6)	CCTBX commit	Sun, 27 Mar 2022 23:07:45 -0700	2803 lines
[git/cctbx_project] master: In response to: buildbot failure in Phenix on cctbx-ci-ci (7889321a36)	CCTBX commit	Fri, 25 Mar 2022 17:43:52 -0700	76 lines
[git/cctbx_project] master: moved to bcr folder (e458ebf442)	CCTBX commit	Fri, 25 Mar 2022 17:30:54 -0700	1931 lines
[git/cctbx_project] master: BCR and Chi-expansion: towards analytical finite resolution model image generation (9109219cd8)	CCTBX commit	Fri, 25 Mar 2022 17:28:32 -0700	2559 lines
[git/cctbx_project] master: Move combine_hd_exchangable to pdb_hierarchy and rename to exchangeable_hd_selections (3daacd0d13)	CCTBX commit	Fri, 25 Mar 2022 12:18:43 -0700	366 lines
[git/cctbx_project] master: mmtbx: add function to return the source filename for a model (2b337c83ab)	CCTBX commit	Fri, 25 Mar 2022 11:15:22 -0700	246 lines
[git/cctbx_project] master: improve speed by replacing list comprehension with boosted c++ for counting NaN values (d59015713b)	CCTBX commit	Fri, 25 Mar 2022 18:06:38 +0000	522 lines
[git/cctbx_project] master: Do not strip "?" or "." when storing original cif arrays in order to display tables of cif arrays correctly in HKLviewer (31871e36d9)	CCTBX commit	Fri, 25 Mar 2022 13:51:33 +0000	232 lines
[git/cctbx_project] master: Fix typo and replace hardwired check for resname with check for element. (3fe2892ba4)	CCTBX commit	Thu, 24 Mar 2022 22:03:42 -0700	119 lines
[git/cctbx_project] master: Add test for de_deuterate (6fe048aff9)	CCTBX commit	Thu, 24 Mar 2022 16:37:23 -0700	1263 lines
[git/cctbx_project] master: Refactoring mouse_moved to plain attribute variable, set better default values (21b9f53464)	CCTBX commit	Thu, 24 Mar 2022 23:28:19 +0000	914 lines
[git/cctbx_project] master: clean clutter (3153347899)	CCTBX commit	Thu, 24 Mar 2022 15:06:23 -0700	80 lines
[git/cctbx_project] master: pdb_hierarchy: add method to remove D atoms in model. Expose it in model class. (a60251a7bb)	CCTBX commit	Thu, 24 Mar 2022 14:52:12 -0700	274 lines
[git/cctbx_project] master: Allow turning off guess of file names (8e35480aac)	CCTBX commit	Thu, 24 Mar 2022 14:05:09 -0700	137 lines
[git/cctbx_project] master: guards against deprecation errors (06bc1aa30b)	CCTBX commit	Thu, 24 Mar 2022 16:03:47 -0500	196 lines
[git/cctbx_project] master: libtbx: add support for Visual Studio 2022 (f6225c3cec)	CCTBX commit	Thu, 24 Mar 2022 10:36:30 -0700	101 lines
[git/cctbx_project] master: CI: start testing on Visual Studio 2022 (b0bfc6af0f)	CCTBX commit	Thu, 24 Mar 2022 10:36:23 -0700	273 lines
[git/cctbx_project] master: CI: clean up Windows (148d945362)	CCTBX commit	Thu, 24 Mar 2022 03:14:40 -0700	494 lines
[git/cctbx_project] master: cleanup (842cf53c59)	CCTBX commit	Wed, 23 Mar 2022 14:53:04 -0700	125 lines
[git/cctbx_project] master: bugfix: combine_hd_exchangable does not interpret alt conf as exchanged site (5aca1e8357)	CCTBX commit	Wed, 23 Mar 2022 14:21:56 -0700	153 lines
[git/cctbx_project] master: CI: add 524 response for retrying to cache conda packages (ef537b4db7)	CCTBX commit	Wed, 23 Mar 2022 09:55:58 -0700	101 lines
[git/cctbx_project] master: Add anisotropic principal axes to vectors tab if present in the data file (dcc6ca95be)	CCTBX commit	Wed, 23 Mar 2022 16:54:06 +0000	426 lines
[git/cctbx_project] master: updates to hopper utils (cc4b50ff45)	CCTBX commit	Wed, 23 Mar 2022 11:08:14 -0500	245 lines
[git/cctbx_project] master: increases readability (4762ce73f6)	CCTBX commit	Wed, 23 Mar 2022 11:08:14 -0500	95 lines
[git/cctbx_project] master: allows drawing shoeboxes around calcs (de6948e616)	CCTBX commit	Wed, 23 Mar 2022 11:08:14 -0500	443 lines
[git/cctbx_project] master: lowers min/max precision for default fixed param (3ba486bf8e)	CCTBX commit	Wed, 23 Mar 2022 11:08:14 -0500	99 lines
[git/cctbx_project] master: updates to geometry_refiner (3573dd296d)	CCTBX commit	Wed, 23 Mar 2022 11:08:14 -0500	879 lines
[git/cctbx_project] master: adds a flag to silence prediction method (c940339c3d)	CCTBX commit	Wed, 23 Mar 2022 11:08:14 -0500	93 lines
[git/cctbx_project] master: add auto_clip_width checkbox (5d832c2e93)	CCTBX commit	Wed, 23 Mar 2022 14:41:04 +0000	83 lines
[git/cctbx_project] master: Merge branch 'HKLviewer_wizardry_tab' (ab57d52eea)	CCTBX commit	Tue, 22 Mar 2022 23:53:23 +0000	92 lines
[git/cctbx_project] master: Tidy up and comment (a3c2b589ae)	CCTBX commit	Tue, 22 Mar 2022 23:50:38 +0000	376 lines
[git/cctbx_project] master: Speed optimisation by sending coordinates, colours, radii and tooltip ids to browser as bytesarray rather than strings over websocket (5d94495952)	CCTBX commit	Tue, 22 Mar 2022 18:28:00 +0000	515 lines
[git/cctbx_project] master: update GUI bug fix (62d0eb6402)	CCTBX commit	Tue, 22 Mar 2022 08:51:40 +0000	223 lines
[git/cctbx_project] master: In progress: defining clip plane width and steps as a function tncs modulation (2ce340658e)	CCTBX commit	Tue, 22 Mar 2022 00:33:28 +0000	557 lines
[git/cctbx_project] master: Make Sorry an assertion in data_manager/model.py; allow set_model of None with overwrite=True (7157e2c6a9)	CCTBX commit	Mon, 21 Mar 2022 12:24:06 -0700	170 lines
[git/cctbx_project] master: clean clutter (8a210e89b3)	CCTBX commit	Mon, 21 Mar 2022 05:08:34 -0700	61 lines
[git/cctbx_project] master: Allow as_model_manager in hierarchy; allow as_model_manager_each_chain in model; allow default in group_args get(), save filename in data_manager get_model() (0f5ccfc9b1)	CCTBX commit	Mon, 21 Mar 2022 04:36:55 -0700	434 lines
[git/cctbx_project] master: Print list of hkls inside and outside of frustum whenever +/- buttons are used for scrolling through clip planes (35f522a6a4)	CCTBX commit	Mon, 21 Mar 2022 00:01:47 +0000	329 lines
[git/cctbx_project] master: delete +- buttons properly (8c4f58fb2c)	CCTBX commit	Sun, 20 Mar 2022 10:03:40 +0000	245 lines
[git/cctbx_project] master: Adding +/- spin buttons for stepping through planes of reflections directly from the browser window rather than from the in the slicing tab on the GUI (fb196a980d)	CCTBX commit	Sun, 20 Mar 2022 00:59:03 +0000	333 lines
[git/cctbx_project] master: More changes to enhance convergence. Increase various largeshift values, which were impeding the necessary changes. Add more off-diagonal Hessian terms. Cross-terms for sigmaT_bins and Asqr_beta were implemented and tested, but commented out because they added significant computational expense without aiding convergence. (4f5ce96576)	CCTBX commit	Sat, 19 Mar 2022 16:33:11 +0000	511 lines
[git/cctbx_project] master: Allow set_unit_cell_crystal_symmetry in shift_any_model_to_match (60794f0e29)	CCTBX commit	Sat, 19 Mar 2022 06:46:23 -0700	165 lines
[git/cctbx_project] master: README: update badges for nightly builds (e452b1b03c)	CCTBX commit	Fri, 18 Mar 2022 21:58:00 -0700	242 lines
[git/cctbx_project] master: Refactoring AnimateRotation(), adding ToggleAnimation button, responding to browser fontsize message (7cc2ba5902)	CCTBX commit	Fri, 18 Mar 2022 17:29:10 +0000	896 lines
[git/cctbx_project] master: Remove some commented-out lines. (d83f881039)	CCTBX commit	Fri, 18 Mar 2022 10:16:30 +0000	96 lines
[git/cctbx_project] master: Change large shift values to get better finite-difference comparisons. (d7531b32ca)	CCTBX commit	Fri, 18 Mar 2022 10:16:30 +0000	121 lines
[git/cctbx_project] master: Minor clarifications and remove some unused lines. (7b0c446f0c)	CCTBX commit	Fri, 18 Mar 2022 10:16:30 +0000	174 lines
[git/cctbx_project] master: Add sphericity restraints to anisotropic B-factor refinement. Add some off-diagonal elements to Hessian for anisotropic Bs. Improve treatment of prior parameter information. Fix error terms for first macrocycle, to allow signal terms to refine first, then refine all terms. Add methods to get radii of spheres that contain a certain fraction of the ordered density. (719af7f1ed)	CCTBX commit	Fri, 18 Mar 2022 10:16:30 +0000	1159 lines
[git/cctbx_project] master: Fix spelling of "minimum" in comments. (5dafeba36d)	CCTBX commit	Fri, 18 Mar 2022 10:16:30 +0000	126 lines
[git/cctbx_project] master: Skip test on Windows (6d58708da5)	CCTBX commit	Fri, 18 Mar 2022 01:53:09 -0700	106 lines
[git/cctbx_project] master: clean clutter (1f70059d64)	CCTBX commit	Thu, 17 Mar 2022 16:23:26 -0700	504 lines
[git/cctbx_project] master: Replace last_resno_as_int with last_resseq_as_int and ph.first_resno_as_int with ph.first_resseq_as_int (777e91a7c9)	CCTBX commit	Thu, 17 Mar 2022 15:04:05 -0700	920 lines
[git/cctbx_project] master: Move all resample operations to map_manager; add capability to add offset in average_maps (4589a7fe07)	CCTBX commit	Thu, 17 Mar 2022 11:56:55 -0600	508 lines
[git/cctbx_project] master: Parsing mtz history to match data_array.phasertng_tag and then assigning corresponding data column to a preset_button and sceneid if button is clicked (44c43b27e9)	CCTBX commit	Thu, 17 Mar 2022 17:48:20 +0000	425 lines
[git/cctbx_project] master: metal coord added to QMR (2bf67cda03)	CCTBX commit	Wed, 16 Mar 2022 18:24:55 -0700	2488 lines
[git/cctbx_project] master: more method and more robust code (a774cebe9a)	CCTBX commit	Wed, 16 Mar 2022 18:18:11 -0700	148 lines
[git/cctbx_project] master: fix name of test (c5dac65e3a)	CCTBX commit	Wed, 16 Mar 2022 18:12:46 -0700	88 lines
[git/cctbx_project] master: rename (d5d4bf6c1c)	CCTBX commit	Wed, 16 Mar 2022 13:02:13 -0700	2192 lines
[git/cctbx_project] master: Add new tests and minor bugfixes. (734e473d19)	CCTBX commit	Wed, 16 Mar 2022 12:23:01 -0700	380 lines
[git/cctbx_project] master: update plotter params to match uc_metrics commit e19682b8 (4c01071cfa)	CCTBX commit	Wed, 16 Mar 2022 12:04:46 -0700	101 lines
[git/cctbx_project] master: A workaround for the lack of signal fired when autoView() has finished. autoView() runs asynchroneously in the background but its completion time is uncertain and can depend on the data size of mycomponent. But it has completed once the condition stage.viewer.camera.position.z==mycomponent.getZoom() is true. So fire our own signal at that point in time. This is needed when the correct value of stage.viewer.camera.position.z is needed for defining clip planes. (272d591189)	CCTBX commit	Wed, 16 Mar 2022 14:48:55 +0000	410 lines
[git/cctbx_project] master: Add known_orientations support to the XFEL GUI (70b7208d79)	CCTBX commit	Tue, 15 Mar 2022 16:44:37 -0700	142 lines
[git/cctbx_project] master: cctbx.xfel.plot_uc_cloud_from_experiments: add option to write an image file (82fcb53495)	CCTBX commit	Tue, 15 Mar 2022 17:28:52 -0400	195 lines
[git/cctbx_project] master: cctbx.xfel.detector_residuals: make plot_max be 0.3 mm by default (128881ad2c)	CCTBX commit	Tue, 15 Mar 2022 14:21:48 -0700	97 lines
[git/cctbx_project] master: Allow node sharing of phenix.refine jobs in the XFEL GUI (d9e62938c6)	CCTBX commit	Tue, 15 Mar 2022 14:21:48 -0700	96 lines
[git/cctbx_project] master: xfel.merge: expose unit cell stats precision as phil parameter (#745) (1b0e7382e9)	CCTBX commit	Tue, 15 Mar 2022 16:44:49 -0400	238 lines
[git/dxtbx] main: Represent more NXmx quantities with Pint (#498) (bdca0d66)	DXTBX commit	Tue, 15 Mar 2022 17:56:19 +0000	1016 lines
[git/cctbx_project] master: ensures geom_refiner saves correct flux (6960fbcb7a)	CCTBX commit	Tue, 15 Mar 2022 10:15:47 -0700	126 lines
[git/cctbx_project] master: bootstrap: replace python with sys.executable (8a65482de5)	CCTBX commit	Tue, 15 Mar 2022 09:41:05 -0700	276 lines
[git/dxtbx] main: Replace bitshuffle usage with hdf5plugin (#500) (a8b16b9b)	DXTBX commit	Tue, 15 Mar 2022 11:29:38 +0000	178 lines
[git/cctbx_project] master: Carry out simple isotropic auto-sharpening/blurring to make ordered volume detection independent of overall B of map. (e71087f24c)	CCTBX commit	Tue, 15 Mar 2022 08:58:40 +0000	226 lines
[git/cctbx_project] master: Offset clipNear and clipFar by (origcameraZpos - stage.viewer.camera.position) when switching on clip planes to prevent glitch due to camera being outside frustum. Simplify mouseObserver.signals.dragged() and mouseObserver.signals.scrolled() Use SetDefaultOrientation() rather than SetAutoView() and apply clipplanes as the last action in set_volatile_param(). (51ce022d5e)	CCTBX commit	Tue, 15 Mar 2022 00:14:55 +0000	488 lines
[git/dxtbx] main's head updated: dxtbx 3.9.0 (074a9ffd)	DXTBX commit	Mon, 14 Mar 2022 22:00:48 +0000	44 lines
[git/dxtbx] main: dxtbx 3.9.0 (074a9ffd)	DXTBX commit	Mon, 14 Mar 2022 21:57:12 +0000	112 lines
[git/cctbx_project] master: bootstrap: add step for rebuilding cablam cache (650f0470e8)	CCTBX commit	Mon, 14 Mar 2022 13:01:14 -0700	153 lines
[git/dxtbx] main: Use pytest<=7.1 for CI (#502) (6cdeedca)	DXTBX commit	Mon, 14 Mar 2022 19:47:55 +0000	115 lines
[git/cctbx_project] master: clean clutter (d40efc6b8c)	CCTBX commit	Mon, 14 Mar 2022 13:24:19 -0600	61 lines
[git/cctbx_project] master: Fix check of extra models (c783992ca0)	CCTBX commit	Mon, 14 Mar 2022 12:08:53 -0700	135 lines
[git/cctbx_project] master: CI: switch to windows-2019 (6662cdca46)	CCTBX commit	Mon, 14 Mar 2022 09:16:42 -0700	398 lines
[git/cctbx_project] master: fixes restraint typos in hopper_utils (c2c1e5573c)	CCTBX commit	Mon, 14 Mar 2022 08:41:59 -0700	186 lines
[git/cctbx_project] master: adjusts nominal beam to represent total flux (cf6421df54)	CCTBX commit	Mon, 14 Mar 2022 08:41:59 -0700	119 lines
[git/cctbx_project] master: updates hopper and pandas frame total_flux (9286f01a21)	CCTBX commit	Mon, 14 Mar 2022 08:41:59 -0700	198 lines
[git/cctbx_project] master: fix check of models (a5b04201f1)	CCTBX commit	Mon, 14 Mar 2022 07:54:22 -0700	91 lines
[git/cctbx_project] master: Catch case where other model has wrong symmetry instead of model (b57b41cefe)	CCTBX commit	Mon, 14 Mar 2022 06:58:12 -0700	114 lines
[git/dxtbx] main: Bump version: 3.9.dev → 3.10.dev (0b09733d)	DXTBX commit	Mon, 14 Mar 2022 12:53:55 +0000	111 lines
[git/dxtbx] tag 'v3.9.0' created	DXTBX commit	Mon, 14 Mar 2022 12:53:54 +0000	40 lines
[git/cctbx_project] master: XFEL simulator show_spot_separation: add show_plots parameter (f7d51fa597)	CCTBX commit	Sun, 13 Mar 2022 17:54:00 -0700	150 lines
[git/cctbx_project] master: XFEL GUI qol features (1426db5bdc)	CCTBX commit	Sun, 13 Mar 2022 17:54:00 -0700	629 lines
[git/cctbx_project] master: In progress: debugging incorrect camera distance/zoom caused when using clip planes first time (05f84b5872)	CCTBX commit	Mon, 14 Mar 2022 00:20:57 +0000	336 lines
[git/cctbx_project] master: qttbx: search for ChimeraX on other platforms (6c37a9ae73)	CCTBX commit	Sun, 13 Mar 2022 12:04:41 -0700	265 lines
[git/cctbx_project] master: Remove GetBoundingBox() as result wasn't used and calling it caused a deadlock (ec6cae3e4b)	CCTBX commit	Sun, 13 Mar 2022 18:14:37 +0000	2366 lines
[git/cctbx_project] master: Fix typos (02855ba689)	CCTBX commit	Sun, 13 Mar 2022 09:08:00 -0600	122 lines
[git/cctbx_project] master: Update docs with hints and info on multiprocessing; minor update to easy_map for verbose in simple_parallel (b785ca5811)	CCTBX commit	Sun, 13 Mar 2022 08:44:11 -0600	1730 lines
[git/cctbx_project] master: tidier (0b304e4034)	CCTBX commit	Sat, 12 Mar 2022 00:48:48 +0000	2228 lines
[git/cctbx_project] master: xfel psana environments: pin psana version (temp fix for #744) (47baa90846)	CCTBX commit	Fri, 11 Mar 2022 13:20:14 -0800	116 lines
[git/cctbx_project] master: enabling/disabling preset buttons depending on what data labels are present in the reflection file (0be5a2b076)	CCTBX commit	Fri, 11 Mar 2022 20:28:48 +0000	940 lines
[git/cctbx_project] master: qttbx: minor logic cleanup (d40b20c808)	CCTBX commit	Fri, 11 Mar 2022 10:37:44 -0800	105 lines
[git/cctbx_project] master: makes proper indexed refl tables (fe061169c9)	CCTBX commit	Fri, 11 Mar 2022 10:20:13 -0800	174 lines
[git/cctbx_project] master: Also provide user friendly binlabel as a phil parameter for preset buttons in place of binner_idx. (c8fa193d78)	CCTBX commit	Fri, 11 Mar 2022 14:05:58 +0000	763 lines
[git/cctbx_project] master: for AA to GeoStd (55dfbf2083)	CCTBX commit	Thu, 10 Mar 2022 12:20:24 -0800	155 lines
[git/cctbx_project] master: qttbx: start switching ChimeraX integration to REST (221440ee8c)	CCTBX commit	Thu, 10 Mar 2022 11:53:08 -0800	910 lines
[git/cctbx_project] master: converting column labels or data types to scene_id as a fallback for preset buttons (111ef03111)	CCTBX commit	Thu, 10 Mar 2022 16:47:16 +0000	1673 lines
[git/cctbx_project] master: Allow only one model in overall_counts (e1995d1550)	CCTBX commit	Thu, 10 Mar 2022 06:10:56 -0700	168 lines
[git/cctbx_project] master: Fix typo (1b6c607eaa)	CCTBX commit	Wed, 9 Mar 2022 15:21:41 -0800	113 lines
[git/cctbx_project] master: Towards enacting phil settings, fixing bugs in using semaphores (3b5b271c6c)	CCTBX commit	Wed, 9 Mar 2022 23:09:42 +0000	1159 lines
[git/cctbx_project] master: Get aniso B before and after scaling (80dda4730a)	CCTBX commit	Wed, 9 Mar 2022 16:02:28 -0700	237 lines
[git/cctbx_project] master: Use libtbx mpi import (f51109ab82)	CCTBX commit	Wed, 9 Mar 2022 12:32:05 -0800	90 lines
[git/dxtbx] main: Fix scan factory from dict construction inconsistency (#496) (93e6ad1b)	DXTBX commit	Wed, 9 Mar 2022 14:41:58 +0000	161 lines
[git/dxtbx] main: Unify scan is_still checking to remove floating point comparisons (#495) (81cfa1fb)	DXTBX commit	Wed, 9 Mar 2022 14:17:38 +0000	382 lines
[git/cctbx_project] master: fix typo (478791c456)	CCTBX commit	Tue, 8 Mar 2022 18:22:18 -0700	104 lines
[git/cctbx_project] master: In progress: Enacting phil settings, fixing bugs in using semaphores (e9d86808cd)	CCTBX commit	Wed, 9 Mar 2022 00:07:07 +0000	863 lines
[git/cctbx_project] master: XFEL GUI: change hitfinding cutoff to 16 spots to match dials.stills_process (964d5976a6)	CCTBX commit	Tue, 8 Mar 2022 14:46:18 -0800	297 lines
[git/cctbx_project] master: Fix dispatcher and console_scripts re-export on Windows (758a775b25)	CCTBX commit	Tue, 8 Mar 2022 12:12:08 +0000	123 lines
[git/cctbx_project] master: Change to full refinement even when prior parameters for the whole reconstruction have been provided. The required assumption that the noise variance has the same anisotropic behaviour regardless of position in the reconstruction is violated by those cryo-EM reconstructions in which even the half-maps have been masked to fall off toward the map edges. (8dc7f00259)	CCTBX commit	Tue, 8 Mar 2022 10:02:15 +0000	275 lines
[git/cctbx_project] master: adds test for diffBragg unitcell api (fca5bd713a)	CCTBX commit	Mon, 7 Mar 2022 18:02:02 -0800	664 lines
[git/cctbx_project] master: use hierarchy functions for sequence (7898c3105e)	CCTBX commit	Mon, 7 Mar 2022 17:25:58 -0800	1359 lines
[git/cctbx_project] master: Hook up flags in XFEL GUI for checking for beam spectrometer streams (24f92da479)	CCTBX commit	Mon, 7 Mar 2022 16:57:56 -0800	147 lines
[git/cctbx_project] master: Sync up with iota imports in XFEL GUI (f29f6d8721)	CCTBX commit	Mon, 7 Mar 2022 16:46:12 -0800	150 lines
[git/cctbx_project] master: Check for corner case in unit cells plot (0937c94126)	CCTBX commit	Mon, 7 Mar 2022 16:05:44 -0800	129 lines
[git/cctbx_project] master: Unbreak cspad.detector_congruence2 and add dispatcher name cctbx.xfel.detector_congruence (db67ef8ff1)	CCTBX commit	Mon, 7 Mar 2022 15:53:18 -0800	183 lines
[git/cctbx_project] master: CI: start caching geostd as artifact (7c240ec92b)	CCTBX commit	Mon, 7 Mar 2022 14:59:35 -0800	276 lines
[git/cctbx_project] master: Merge pull request #734 from cctbx/kokkos_sconscript_cmake (b102937ec5)	CCTBX commit	Mon, 7 Mar 2022 15:12:23 -0700	72 lines
[git/cctbx_project] master: Machine support for kokkos cmake builds (2cade089b0)	CCTBX commit	Mon, 7 Mar 2022 15:04:46 -0700	437 lines
[git/cctbx_project] master: updates hopper (a2c98a4751)	CCTBX commit	Mon, 7 Mar 2022 11:57:15 -0600	531 lines
[git/cctbx_project] master: updates phil options (e9b807c4c4)	CCTBX commit	Mon, 7 Mar 2022 11:57:15 -0600	184 lines
[git/cctbx_project] master: updates prediction routines (579696197a)	CCTBX commit	Mon, 7 Mar 2022 11:57:15 -0600	404 lines
[git/cctbx_project] master: updates forward models (68b86fc684)	CCTBX commit	Mon, 7 Mar 2022 11:57:15 -0600	325 lines
[git/cctbx_project] master: updates geometry_refiner (e5f6cebef2)	CCTBX commit	Mon, 7 Mar 2022 11:57:15 -0600	2427 lines
[git/cctbx_project] master: updates diffBragg utils (0e7c010e80)	CCTBX commit	Mon, 7 Mar 2022 11:57:15 -0600	438 lines
[git/cctbx_project] master: forces NBragg constructor beam to use ave wavelen (118a445565)	CCTBX commit	Mon, 7 Mar 2022 11:57:15 -0600	127 lines
[git/cctbx_project] master: updates ensemble loader (390cb9e2b5)	CCTBX commit	Mon, 7 Mar 2022 11:57:15 -0600	190 lines
[git/cctbx_project] master: In progress: Enacting phil settings correctly defined in PresetButtons.py (7c280a381d)	CCTBX commit	Mon, 7 Mar 2022 17:54:17 +0000	1169 lines
[git/cctbx_project] master: Button for showing current phil parameters (d3e16f3bb9)	CCTBX commit	Sun, 6 Mar 2022 19:51:17 +0000	342 lines
[git/cctbx_project] master: Use hierarchy.apply_atom_selection(selection) (38b95bbf41)	CCTBX commit	Sat, 5 Mar 2022 14:32:30 -0800	796 lines
[git/cctbx_project] master: Use model.chain_ids() instead of get_chain_ids(model.get_hierarchy()) (90f47ede54)	CCTBX commit	Sat, 5 Mar 2022 10:47:35 -0800	691 lines
[git/cctbx_project] master: remove unused import (80cde77357)	CCTBX commit	Fri, 4 Mar 2022 13:54:24 -0800	93 lines
[git/cctbx_project] master: use first_chain_id instead of get_chain_id (1120c56632)	CCTBX commit	Fri, 4 Mar 2022 13:39:22 -0800	932 lines
[git/cctbx_project] master: Mock-up for dynamic creation of preset buttons from buttons-definitio-list (12ce0fad6d)	CCTBX commit	Fri, 4 Mar 2022 18:06:45 +0000	1581 lines
[git/cctbx_project] master: Merge branch 'master' into HKLviewer_wizardry_tab (daba1078a8)	CCTBX commit	Fri, 4 Mar 2022 16:20:41 +0000	68 lines
[git/cctbx_project] master: Persist numbers of Qsplitters and Qtabwidget as a rough fingerprint of GUI version. This is to avoid the layout of a newer GUI being messed up by persisted settings on disk of an older version of the GUI. Using factory defaults in that case. (1f38251ea2)	CCTBX commit	Fri, 4 Mar 2022 15:06:14 +0000	383 lines
[git/cctbx_project] master: inject only informational methods (f7b7da1c5f)	CCTBX commit	Thu, 3 Mar 2022 18:19:55 -0800	109 lines
[git/cctbx_project] master: clean clutter (abd5a815cd)	CCTBX commit	Thu, 3 Mar 2022 16:16:19 -0800	61 lines
[git/cctbx_project] master: test first_resno_as_int and last_resno_as_int in model and hierarchy (8b5682f59b)	CCTBX commit	Thu, 3 Mar 2022 15:09:00 -0800	104 lines
[git/cctbx_project] master: Test first_resno_as_int (8ae09a2727)	CCTBX commit	Thu, 3 Mar 2022 15:01:06 -0800	122 lines
[git/cctbx_project] master: de-clutter (e0786ee9ae)	CCTBX commit	Thu, 3 Mar 2022 22:22:35 +0000	61 lines
[git/cctbx_project] master: Retain value of distance between reflection planes if switching from clip planes aligned normal to a vector to clip planes being unconstrained by mouse rotation. SetDefaultOrientation() should not rotate stage when mouse rotation has been disabled (f164002698)	CCTBX commit	Thu, 3 Mar 2022 22:21:36 +0000	290 lines
[git/cctbx_project] master: Fix simtbx flux test (#741) (25fb5a2cff)	CCTBX commit	Thu, 3 Mar 2022 13:45:12 -0800	150 lines
[git/dxtbx] main: Add reading and writing of flux to full CBF files (#493) (bb901d8a)	DXTBX commit	Thu, 3 Mar 2022 13:42:50 -0800	264 lines
[git/cctbx_project] master: Allow access to certain pdb_hierarchy methods directly from model manager (14141fb5ed)	CCTBX commit	Thu, 3 Mar 2022 13:04:29 -0800	702 lines
[git/cctbx_project] master: Consistent logic in GUI for slicing (e67098d375)	CCTBX commit	Thu, 3 Mar 2022 18:49:49 +0000	625 lines
[git/cctbx_project] master: Use methods from hierarchy for chain_type instead of bioinformatics (8dfaff5b90)	CCTBX commit	Thu, 3 Mar 2022 08:35:22 -0800	1041 lines
[git/cctbx_project] master: remove zooming with middle mouse wheel button when using clip planes to avoid messing up view (cf467915ee)	CCTBX commit	Wed, 2 Mar 2022 23:36:52 +0000	112 lines
[git/cctbx_project] master: Allow writing mask file calculated from a model or map (.ccp4 map with values of 1.0/0.0) (ca79c2f451)	CCTBX commit	Wed, 2 Mar 2022 13:25:41 -0700	110 lines
[git/cctbx_project] master: Allow writing mask file calculated from a model or map (.ccp4 map with values of 1.0/0.0) (652e9f5919)	CCTBX commit	Wed, 2 Mar 2022 13:18:21 -0700	169 lines
[git/cctbx_project] master: working on an integrated wizard for the HKLviewer (32af07cec7)	CCTBX commit	Wed, 2 Mar 2022 18:24:30 +0000	81 lines
[git/cctbx_project] master: Magic fix for strange problem with GUI hanging and crashing on MacOS Monterey (84778b7104)	CCTBX commit	Wed, 2 Mar 2022 11:54:45 +0000	94 lines
[git/dxtbx] main: Update dxtbx CI dependencies (#494) (ae5d2b6a)	DXTBX commit	Wed, 2 Mar 2022 10:33:24 +0000	120 lines
[git/cctbx_project] tag 'v2022.2' created	CCTBX commit	Tue, 1 Mar 2022 02:53:03 -0800	40 lines
[git/cctbx_project] master: Update CHANGELOG.rst for 2022.2 release (23fe1416ff)	CCTBX commit	Tue, 1 Mar 2022 02:53:03 -0800	94 lines
[git/cctbx_project] master: conda: clean up paths for installation (5e0d231c00)	CCTBX commit	Tue, 1 Mar 2022 02:51:42 -0800	138 lines
[git/dxtbx] main: Fix Beam constructor error and tidy method documentation (#488) (361fe697)	DXTBX commit	Tue, 1 Mar 2022 09:30:58 +0000	893 lines

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