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Subject	From	Date	Size
[git/dxtbx] master: Revise dynamic shadow handling Means that the i03 tests still pass but now we have xia2 3dii also works (779ed55)	DXTBX commit	Tue, 30 Apr 2019 12:00:00 +0100	101 lines
[git/dxtbx] master: Make get_goniometer_shadow_masker() return None (c03e118)	DXTBX commit	Tue, 30 Apr 2019 09:20:04 +0100	112 lines
[git/dxtbx] master: Fix https://jira.diamond.ac.uk/browse/SCI-8627 As detector has moved house, account for dynamic shadowing iff the gonio has three axes (as it used to) (c342aed)	DXTBX commit	Tue, 30 Apr 2019 06:44:51 +0100	118 lines
[git/cctbx] master: Handle pickle and mpack files (2b7aec8a1)	CCTBX commit	Mon, 29 Apr 2019 17:16:36 -0700	190 lines
[git/cctbx] master: remove debugging printout (2efe33f43)	CCTBX commit	Mon, 29 Apr 2019 10:34:25 -0700	83 lines
[git/cctbx] master: Use mean for target (be6b78add)	CCTBX commit	Mon, 29 Apr 2019 11:27:40 -0600	105 lines
[git/cctbx] master: py3: fix future imports in boost/boost_adaptbx (5150b60d1)	CCTBX commit	Sun, 28 Apr 2019 19:40:55 -0700	1055 lines
[git/cctbx] master: py3: fix xrange in boost (b2468a52b)	CCTBX commit	Sun, 28 Apr 2019 18:30:47 -0700	81 lines
[git/cctbx] master: py3: fix raise in boost_adaptbx (a086cfb84)	CCTBX commit	Sun, 28 Apr 2019 18:30:47 -0700	201 lines
[git/cctbx] master: py3: fix dict in boost_adaptbx (5b9d4ac20)	CCTBX commit	Sun, 28 Apr 2019 18:30:47 -0700	116 lines
[git/cctbx] master: py3: fix print in boost_adaptbx (fff2dc175)	CCTBX commit	Sun, 28 Apr 2019 18:30:47 -0700	1230 lines
[git/cctbx] master: py3: fix xrange in boost_adaptbx (28f187a02)	CCTBX commit	Sun, 28 Apr 2019 18:30:47 -0700	252 lines
[git/cctbx] master: py3: remove redundant test in boost_adaptbx (04377cc59)	CCTBX commit	Sun, 28 Apr 2019 18:30:47 -0700	106 lines
[git/cctbx] master: py3: fix except in boost_adaptbx (822187d29)	CCTBX commit	Sun, 28 Apr 2019 18:30:47 -0700	314 lines
[git/cctbx] master: py3: fix tst_stdout in boost_adaptbx (156c0be17)	CCTBX commit	Sun, 28 Apr 2019 18:30:47 -0700	86 lines
[git/cctbx] master: program_template:: add default output filename (dcd721514)	CCTBX commit	Sun, 28 Apr 2019 01:29:37 -0700	245 lines
[git/cctbx] master: program_template: add test for program PHIL (4565aa2a2)	CCTBX commit	Sun, 28 Apr 2019 00:46:44 -0700	183 lines
[git/cctbx] master: program_template: add functions for displaying PHIL (7a489f067)	CCTBX commit	Sat, 27 Apr 2019 22:13:20 -0700	342 lines
[git/cctbx] master: change default so O symmetry does not apply (7f96f7a8e)	CCTBX commit	Sat, 27 Apr 2019 19:55:12 -0600	107 lines
[git/cctbx] master: clean clutter (521e2d94c)	CCTBX commit	Sat, 27 Apr 2019 19:46:39 -0600	58 lines
[git/cctbx] master: allow use of map without masking (77a16b86d)	CCTBX commit	Sat, 27 Apr 2019 17:51:11 -0700	176 lines
[git/dxtbx] master: Run flake8 on pull requests (dad17be)	DXTBX commit	Sat, 27 Apr 2019 10:47:06 +0100	192 lines
[git/cctbx] master: Better colour chart with fom values (e294ace2b)	CCTBX commit	Fri, 26 Apr 2019 17:45:57 +0100	326 lines
[git/cctbx] master: Make notes on limitations of get_half_height_width=true in map_box (885c5b361)	CCTBX commit	Thu, 25 Apr 2019 17:10:51 -0700	128 lines
[git/cctbx] master: Merge branch 'NGL_HKLviewer' (678c4b1dd)	CCTBX commit	Thu, 25 Apr 2019 18:29:59 +0100	71 lines
[git/cctbx] master: Greying out phase colours of map coefficients as a function of decreasing fom values (3ac19b5b2)	CCTBX commit	Thu, 25 Apr 2019 18:18:28 +0100	393 lines
[git/cctbx] master: fixes for showing systematic absences (dc960ff1f)	CCTBX commit	Thu, 25 Apr 2019 16:42:36 +0100	213 lines
[git/dxtbx] master: Be clearer about which variables are imageset and data (502c38f)	DXTBX commit	Thu, 25 Apr 2019 14:49:01 +0100	537 lines
[git/dxtbx] master: Change some deprecated methods to avoid warnings (3d1b3ba)	DXTBX commit	Thu, 25 Apr 2019 14:49:01 +0100	407 lines
[git/dxtbx] master: Tidy, and fix a few flake8 warnings in datablock/serialize (3afafe1)	DXTBX commit	Thu, 25 Apr 2019 14:48:58 +0100	801 lines
[git/dxtbx] master: Tidy and tweak experiment_list.py (63f5b3d)	DXTBX commit	Thu, 25 Apr 2019 14:42:10 +0100	1120 lines
[git/cctbx] master: more fixes for displaying missing data (d05262a31)	CCTBX commit	Thu, 25 Apr 2019 12:40:40 +0100	398 lines
[git/cctbx] master: more fixes for displaying missing data (5364b5434)	CCTBX commit	Thu, 25 Apr 2019 12:38:20 +0100	397 lines
[git/dxtbx] master: Allow loading dials_regression from common path (6cf0554)	DXTBX commit	Thu, 25 Apr 2019 10:10:20 +0100	306 lines
[git/cctbx] master: Catching runtime error from C and converting it to a Sorry. (6d4431282)	CCTBX commit	Wed, 24 Apr 2019 11:29:09 -0700	121 lines
[git/cctbx] master: Catch missing local_si (02c2aa74a)	CCTBX commit	Wed, 24 Apr 2019 12:09:42 -0600	158 lines
[git/cctbx] master: Use underload for swissfel JF16M, following resolution of nexusformat/definitions#656 (21f1ec64e)	CCTBX commit	Wed, 24 Apr 2019 10:13:10 -0700	92 lines
[git/dxtbx] master: Add underload to nexus.py, following resolution of nexusformat/definitions#656 (6510c76)	DXTBX commit	Wed, 24 Apr 2019 10:10:30 -0700	133 lines
[git/cctbx] master: fixes for showing missing reflections (ae72741e4)	CCTBX commit	Wed, 24 Apr 2019 17:20:32 +0100	479 lines
[git/dxtbx] master: Add .flake8 to make output less noisy (312d60a)	DXTBX commit	Wed, 24 Apr 2019 15:13:49 +0100	101 lines
[git/dxtbx] master: Randomly scatter 1e3 (45ca784)	DXTBX commit	Wed, 24 Apr 2019 14:32:30 +0100	116 lines
[git/cctbx] master: towards fixing bug displaying missing data (ca68efc6f)	CCTBX commit	Wed, 24 Apr 2019 09:15:31 +0100	611 lines
[git/cctbx] master: Merge branch 'master' of github.com:cctbx/cctbx_project (19bae6326)	CCTBX commit	Wed, 24 Apr 2019 09:10:05 +0100	60 lines
[git/dxtbx] master: Sanitize format for dumped packets After some investigation seems only need to flag for bad pixels if 16 bit - removes some derpage (shape flex does not have uint32 type) (4498d50)	DXTBX commit	Tue, 23 Apr 2019 20:18:32 +0100	156 lines
[git/cctbx] master: Uniform print out of restraint numbers (b0c66efe1)	CCTBX commit	Tue, 23 Apr 2019 10:55:15 -0700	93 lines
[git/dxtbx] master: Yuck do not look; hacking in effect (c73f37b)	DXTBX commit	Tue, 23 Apr 2019 15:45:53 +0100	122 lines
[git/dxtbx] master: future compatibility (d3c8037)	DXTBX commit	Tue, 23 Apr 2019 13:20:00 +0100	92 lines
[git/cctbx] master: fixes for expanding to P1 and anomalous for map coefficients with associated FOM. (c23ec9f24)	CCTBX commit	Mon, 22 Apr 2019 22:52:52 +0100	467 lines
[git/cctbx] master: clean clutter and remove Amber from external buildbot (c06b18d63)	CCTBX commit	Mon, 22 Apr 2019 08:11:45 -0700	612 lines
[git/cctbx] master: fix using display2.py and not display.py (561231547)	CCTBX commit	Mon, 22 Apr 2019 10:41:40 +0100	109 lines
[git/cctbx] master: Renamed display.py to display2.py for backwards compatibility with Change "and" to "&&" for the sake of VC2008 (b8740ed53)	CCTBX commit	Mon, 22 Apr 2019 10:33:12 +0100	76 lines
[git/cctbx] master: Merge branch 'master' of github.com:cctbx/cctbx_project (04d4f619b)	CCTBX commit	Mon, 22 Apr 2019 10:06:29 +0100	64 lines
Jenkins 5a cctbx Tests build 8207 Fixed	DLS Jenkins	Mon, 22 Apr 2019 06:26:34 +0100	44 lines
[git/cctbx] master: This should fix compiling problem with certain versions (f614be89d)	CCTBX commit	Mon, 22 Apr 2019 13:08:34 +0800	611 lines
Jenkins 5a cctbx Tests build 8206 Still Failing	DLS Jenkins	Mon, 22 Apr 2019 01:20:07 +0100	681 lines
[git/cctbx] master: Merge branch 'NGL_HKLviewer' (32f3a9158)	CCTBX commit	Sun, 21 Apr 2019 23:00:51 +0100	84 lines
[git/cctbx] master: bug fixes for displaying missing data (69b14c9d6)	CCTBX commit	Sun, 21 Apr 2019 22:44:59 +0100	644 lines
Jenkins 5a cctbx Tests build 8205 Still Failing	DLS Jenkins	Sun, 21 Apr 2019 17:35:40 +0100	673 lines
[git/cctbx] master: Move wv to c++; add pkl for wfc (b8fd0abbb)	CCTBX commit	Sun, 21 Apr 2019 20:40:22 +0800	1009 lines
[git/cctbx] master: removed (d2e902370)	CCTBX commit	Sun, 21 Apr 2019 16:10:24 +0800	221 lines
[git/cctbx] master: More tests, some cleanup (e18dcc9a7)	CCTBX commit	Sun, 21 Apr 2019 16:09:43 +0800	72 lines
[git/cctbx] master: Stage 2: major cleanup, moveing more to c++ (d1a058f50)	CCTBX commit	Sun, 21 Apr 2019 15:42:34 +0800	2142 lines
[git/cctbx] master: Pair interaction code. This is a stub. It is durty and does not work yet. (47a92036a)	CCTBX commit	Sat, 20 Apr 2019 13:22:50 +0800	3099 lines
[git/cctbx] master: Function to create a pickle with info from RCSB and class to use it. Polling RCSB for info. Example how to automatically find homologues for each chain, and get model using these and other tools. (993505394)	CCTBX commit	Fri, 19 Apr 2019 16:05:20 -0700	564 lines
[git/dxtbx] master: Add a pyproject.toml so black covers SConscripts (eba4d50)	DXTBX commit	Fri, 19 Apr 2019 14:53:08 +0100	773 lines
[git/dxtbx] master: Clean clutter (c6bd8c4)	DXTBX commit	Fri, 19 Apr 2019 14:37:07 +0100	90 lines
[git/cctbx] master: Convenience functions exercise OpenMP in omptbx context. (ebb5f88b0)	CCTBX commit	Thu, 18 Apr 2019 20:38:50 -0700	146 lines
[git/cctbx] master: added interface checking to qrefine install (50df6a10f)	CCTBX commit	Thu, 18 Apr 2019 19:13:32 -0700	97 lines
[git/dxtbx] master: Quick hack. Will be contacting bitshuffle dev to get a conda package going. Will revert this when it's ready. (f3c354d)	DXTBX commit	Thu, 18 Apr 2019 17:19:04 -0700	91 lines
[git/cctbx] master: conda: fix check for gdk-pixbuf-query-loaders (bbfa6fbfa)	CCTBX commit	Thu, 18 Apr 2019 16:56:22 -0700	100 lines
[git/cctbx] master: conda: skip refreshing of loaders.cache if gdk-pixbuf-query-loaders is not present (5e06c8565)	CCTBX commit	Thu, 18 Apr 2019 11:02:27 -0700	94 lines
[git/cctbx] master: Merge pull request #317 from cctbx/msgpack_as_default (b458a2c03)	CCTBX commit	Thu, 18 Apr 2019 14:47:59 +0100	100 lines
[git/dxtbx] master: Merge pull request #2 from cctbx/ndevenish-codecov (c922eb3)	DXTBX commit	Thu, 18 Apr 2019 13:25:24 +0100	68 lines
[git/dxtbx] master: Fix the definition of Experiment::is_still (6c27f53)	DXTBX commit	Thu, 18 Apr 2019 13:11:08 +0100	177 lines
[git/cctbx] master: example (c5e25c339)	CCTBX commit	Thu, 18 Apr 2019 16:59:31 +0800	169 lines
[git/dxtbx] master: Paint it, black (6feaf09)	DXTBX commit	Thu, 18 Apr 2019 09:49:38 +0100	300 lines
[git/dxtbx] master: Putative first implementation for 0mq dump reading (5d46a16)	DXTBX commit	Thu, 18 Apr 2019 09:49:22 +0100	399 lines
[git/cctbx] master: Also allow binning according to resolution shells, towards rainbow colour chart of phase values including FOM values (e3ebcb2e5)	CCTBX commit	Wed, 17 Apr 2019 15:43:46 +0100	76 lines
[git/dxtbx] master: lgtm: fix format string (1ac0498)	DXTBX commit	Wed, 17 Apr 2019 10:59:00 +0100	501 lines
[git/dxtbx] master: Replace functions pretending to be classes (f08427b)	DXTBX commit	Wed, 17 Apr 2019 10:55:34 +0100	440 lines
[git/cctbx] master: Removing useless code (d5ae546c9)	CCTBX commit	Wed, 17 Apr 2019 08:04:50 +0100	84 lines
[git/cctbx] master: assertion out (1f7362919)	CCTBX commit	Tue, 16 Apr 2019 20:37:47 -0700	87 lines
[git/cctbx] master: Look for msgpack files in stripe_experiments (cbc9a4905)	CCTBX commit	Tue, 16 Apr 2019 17:17:09 -0700	139 lines
[git/cctbx] master: Look for pickles and mpack files for backwards compatibility (0a6eceb27)	CCTBX commit	Tue, 16 Apr 2019 16:17:36 -0700	107 lines
[git/cctbx] master: More switching to msgpack for cspad.cbf_metrology (ef13b079d)	CCTBX commit	Tue, 16 Apr 2019 15:52:33 -0700	223 lines
[git/cctbx] master: dumb di dumb dumb (fd54cab96)	CCTBX commit	Tue, 16 Apr 2019 14:39:49 -0700	86 lines
[git/dxtbx] master: Temporary check for unsupported NXmx term, undefined_value (9efa103)	DXTBX commit	Tue, 16 Apr 2019 13:24:36 -0700	120 lines
[git/cctbx] master: LV: investigate varying NBOs (5bdab7be6)	CCTBX commit	Tue, 16 Apr 2019 12:17:55 -0700	192 lines
[git/cctbx] master: bug fixes (8fad30063)	CCTBX commit	Tue, 16 Apr 2019 18:02:04 +0100	452 lines
[git/cctbx] master: small changes and notes (833e6f787)	CCTBX commit	Tue, 16 Apr 2019 03:22:45 -0700	174 lines
[git/cctbx] master: added CSV output for H-bond in secondary structure (06a77883d)	CCTBX commit	Tue, 16 Apr 2019 01:57:28 -0700	740 lines
[git/cctbx] master: added ideal coordinates for SEC, PYL (8d127e9e8)	CCTBX commit	Tue, 16 Apr 2019 01:57:28 -0700	1028 lines
[git/cctbx] master: Merge branch 'master' of https://github.com/cctbx/cctbx_project (b49ce6bd8)	CCTBX commit	Tue, 16 Apr 2019 09:44:43 +0100	67 lines
[git/cctbx] master: VL: update tests. (8cfde5911)	CCTBX commit	Mon, 15 Apr 2019 16:43:18 -0700	501 lines
[git/cctbx] master: Add trusted_range as option for creating JF16M NeXus file (d55133c1c)	CCTBX commit	Mon, 15 Apr 2019 13:58:09 -0700	118 lines
[git/dxtbx] master: Bugfix for NeXus multi-panel detectors and trusted range (b6605ad)	DXTBX commit	Mon, 15 Apr 2019 13:56:57 -0700	114 lines
[git/cctbx] master: Obtaining statistic info when generating mmCIF and GRM is present. (c7dac5639)	CCTBX commit	Mon, 15 Apr 2019 13:05:44 -0700	99 lines
[git/cctbx] master: Generalising sqrt_scale_radii to nth_root_scale_radii (8a65411a3)	CCTBX commit	Mon, 15 Apr 2019 18:36:00 +0100	616 lines
[git/dxtbx] master: pytest 4.0 compatibility (3893a49)	DXTBX commit	Mon, 15 Apr 2019 12:23:26 +0100	186 lines
[git/cctbx] master: Allowing multiple letters for chain ids {1, n} in the HHPred parser in iotbx/bioinformatics (77e2a1599)	CCTBX commit	Mon, 15 Apr 2019 10:26:32 +0100	88 lines
[git/cctbx] master: A stub for ligand fitting (b021f996e)	CCTBX commit	Mon, 15 Apr 2019 15:45:39 +0800	942 lines
[git/dxtbx] master: lgtm: remove unused variables (98d750f)	DXTBX commit	Mon, 15 Apr 2019 08:04:03 +0100	228 lines
[git/cctbx] master: Allow skipping scale factor or applying it (ed53daee2)	CCTBX commit	Sat, 13 Apr 2019 12:29:33 -0600	178 lines
[git/cctbx] master: fixed whitespace issue per buildbot message (9ab7a7130)	CCTBX commit	Fri, 12 Apr 2019 22:46:40 -0700	54 lines
[git/cctbx] master: fixed whitespace issue per buildbot message (5162787ab)	CCTBX commit	Fri, 12 Apr 2019 22:45:22 -0700	78 lines
[git/cctbx] master: LV: add test (ADPs) (218954c04)	CCTBX commit	Fri, 12 Apr 2019 17:04:14 -0700	602 lines
[git/cctbx] master: Clean clutter (56090c8f2)	CCTBX commit	Fri, 12 Apr 2019 16:58:51 -0700	109 lines
[git/cctbx] master: Example/test file for local_blast.py (992af950f)	CCTBX commit	Fri, 12 Apr 2019 15:25:48 -0700	119 lines
[git/cctbx] master: A module to run blast locally. (159750767)	CCTBX commit	Fri, 12 Apr 2019 15:24:17 -0700	283 lines
[git/cctbx] master: fixed lacking grey colour when FOM=0.0 (2c951b07d)	CCTBX commit	Fri, 12 Apr 2019 23:14:18 +0100	172 lines
[git/cctbx] master: bug fixes (0335d3739)	CCTBX commit	Fri, 12 Apr 2019 21:09:54 +0100	306 lines
[git/cctbx] master: LV: Make adding H to input model optional. (ff8ee4922)	CCTBX commit	Fri, 12 Apr 2019 11:36:47 -0700	758 lines
[git/cctbx] master: Don't show SS bonds and angles in standard geometry validation. (e44330404)	CCTBX commit	Fri, 12 Apr 2019 11:34:34 -0700	182 lines
[git/cctbx] master: Towards graying colours according to FOM values when displaying map coefficients (53db031fe)	CCTBX commit	Fri, 12 Apr 2019 19:04:07 +0100	341 lines
[git/cctbx] master: Deal with NaN values in display.process_input_array() and fallback to grey if encountered by colors::Phi_FOM_colour() (813f8aec3)	CCTBX commit	Fri, 12 Apr 2019 15:41:38 +0100	293 lines
[git/cctbx] master: Add '-v' flag to installers (28f6b13c5)	CCTBX commit	Fri, 12 Apr 2019 13:41:31 +0100	95 lines
[git/cctbx] master: Sort path items in output (707b00884)	CCTBX commit	Fri, 12 Apr 2019 08:40:26 +0100	185 lines
[git/cctbx] master: Added dxtbx include path - fixes make when compiling nanoBraggCUDA.cu (afc1a054d)	CCTBX commit	Thu, 11 Apr 2019 22:40:47 -0700	84 lines
[git/cctbx] master: Update to chain id when outputting sequence in cif (f83b17271)	CCTBX commit	Thu, 11 Apr 2019 21:02:07 -0700	123 lines
[git/dxtbx] master: lgtm: campsite improvements (ab68cf9)	DXTBX commit	Thu, 11 Apr 2019 23:13:02 +0100	943 lines
[git/cctbx] master: VL: clean up and minor changes. (10efdc0df)	CCTBX commit	Thu, 11 Apr 2019 14:13:56 -0700	455 lines
[git/cctbx] master: Towards colouring reflections according to phase values in miller arrays with map coefficients (48af312bc)	CCTBX commit	Thu, 11 Apr 2019 18:59:24 +0100	1043 lines
[git/dxtbx] master: Add an is_still and is_sweep checker to Experiment (e7fc848)	DXTBX commit	Thu, 11 Apr 2019 12:47:08 +0100	291 lines
[git/dxtbx] master: Fix minor typo in experiment test (e043cc9)	DXTBX commit	Thu, 11 Apr 2019 10:27:08 +0100	91 lines
[git/dxtbx] master: Add codecov coverage badge to README (2b71300)	DXTBX commit	Thu, 11 Apr 2019 09:31:11 +0100	94 lines
[git/dxtbx] master: Use lookup tables for all ExperimentList models (fecddc2)	DXTBX commit	Thu, 11 Apr 2019 09:22:13 +0100	510 lines
[git/cctbx] master: Introducing new test_util: assert_lines_in_text (1d0099e75)	CCTBX commit	Wed, 10 Apr 2019 18:06:31 -0700	149 lines
[git/cctbx] master: New test for illustrate inconsistencies with geometry_restraints.edits machinery. Not failing on purpose. (f67020911)	CCTBX commit	Wed, 10 Apr 2019 18:06:31 -0700	347 lines
[git/cctbx] master: VL: run readyset and determine nonbonded overlaps. (fcbde3b3f)	CCTBX commit	Wed, 10 Apr 2019 16:41:05 -0700	838 lines
[git/cctbx] master: pdb_as_cif: update PDB/CIF conversion GUI tool to changes in pdb_as_cif (0efa8f0d1)	CCTBX commit	Wed, 10 Apr 2019 10:41:30 -0700	109 lines
[git/dxtbx] master: Test serializing experiment lists with mixed None/valid models (5d005c8)	DXTBX commit	Wed, 10 Apr 2019 16:28:09 +0100	537 lines
[git/dxtbx] master: Move experiment_list test (c86f49a)	DXTBX commit	Wed, 10 Apr 2019 16:21:49 +0100	74 lines
[git/cctbx] master: Reset settings to default values when a new file is loaded (690f5e0f1)	CCTBX commit	Wed, 10 Apr 2019 16:15:02 +0100	228 lines
[git/dxtbx] master: Enable travis testing for dxtbx (02ce401)	DXTBX commit	Wed, 10 Apr 2019 13:32:27 +0100	440 lines
[git/cctbx] master: Retain orientation and positions when loading different columns from the same file only (2c3bd254c)	CCTBX commit	Wed, 10 Apr 2019 13:02:03 +0100	343 lines
[git/dxtbx] master: a few dxtbx tests are not pytest 4.0 compatible (3c56566)	DXTBX commit	Wed, 10 Apr 2019 10:59:06 +0100	83 lines
[git/dxtbx] master: Add LGTM badges to README (f4c05de)	DXTBX commit	Wed, 10 Apr 2019 08:10:24 +0100	94 lines
[git/cctbx] master: Soften test due to numeric issues (0c111a04a)	CCTBX commit	Tue, 9 Apr 2019 13:48:23 -0700	108 lines
[git/cctbx] master: Adopt to new behaviour (d8683da38)	CCTBX commit	Tue, 9 Apr 2019 13:27:23 -0700	399 lines
[git/cctbx] master: Stop if polymer chain crosses a symmetry element. (9564f7a02)	CCTBX commit	Tue, 9 Apr 2019 12:36:22 -0700	378 lines
[git/cctbx] master: Merge branch 'two_new_standard_amino_acids' of github.com:cctbx/cctbx_project into two_new_standard_amino_acids (ed4e469f5)	CCTBX commit	Tue, 9 Apr 2019 11:22:26 -0700	60 lines
[git/cctbx] master: old test fix (ac2278965)	CCTBX commit	Tue, 9 Apr 2019 11:21:48 -0700	87 lines
[git/cctbx] master: adjusted tests from 2 standard AA (dbe7343d8)	CCTBX commit	Tue, 9 Apr 2019 11:21:48 -0700	757 lines
[git/cctbx] master: added ideal geoms for PYL, SEC (332b69e41)	CCTBX commit	Tue, 9 Apr 2019 11:21:48 -0700	757 lines
[git/cctbx] master: moved two codes out of modified (f9bd84a09)	CCTBX commit	Tue, 9 Apr 2019 11:19:19 -0700	178 lines
[git/cctbx] master: added ideal geoms for PYL, SEC (ee491667f)	CCTBX commit	Tue, 9 Apr 2019 11:19:19 -0700	558 lines
[git/cctbx] master: start of updated AA sequence (f15702201)	CCTBX commit	Tue, 9 Apr 2019 11:19:19 -0700	191 lines
[git/cctbx] master: adjusted tests from 2 standard AA (479a2ebeb)	CCTBX commit	Tue, 9 Apr 2019 11:19:19 -0700	848 lines
[git/cctbx] master: a message to alert users to protein back bone on special position (360473526)	CCTBX commit	Tue, 9 Apr 2019 11:02:43 -0700	113 lines
[git/cctbx] master: Safe and controllobal map at d_min. (1e90d1044)	CCTBX commit	Tue, 9 Apr 2019 09:15:15 -0700	152 lines
[git/dxtbx] master: Fix beam self-serialization (fc97eb5)	DXTBX commit	Tue, 9 Apr 2019 17:06:25 +0100	230 lines
[git/cctbx] master: Modified reading in msgpack to use flex.reflection_table.from_file which will read either msgpack or pickle. Also modified comment to be more generic (50e3af45a)	CCTBX commit	Tue, 9 Apr 2019 09:15:05 +0100	141 lines
[git/cctbx] master: Avoid eventual Miller index not in structure factor map crashes (f9a6e06e6)	CCTBX commit	Mon, 8 Apr 2019 13:41:59 -0700	95 lines
[git/cctbx] master: conda: pick other HDF5 package for Windows to avoid stdbool.h error (bae164219)	CCTBX commit	Mon, 8 Apr 2019 12:55:27 -0700	146 lines
[git/cctbx] master: Don't set negative intensities to 0.0. Provide GetBinInfo(). Improve bookkeeping of bins of miller data to ensure javascript spherebufs and other arrays are always zero indexed (cfd49a502)	CCTBX commit	Mon, 8 Apr 2019 19:11:41 +0100	655 lines
[git/cctbx] master: Modified references to reflection pickle files from dials to use msgpack (d296fb7ab)	CCTBX commit	Mon, 8 Apr 2019 11:30:00 +0100	1544 lines
Jenkins 5b cctbx MacOS build 3583 Fixed	DLS Jenkins	Sun, 7 Apr 2019 07:09:48 +0100	44 lines
Jenkins 5b cctbx MacOS build 3582 Unstable	DLS Jenkins	Sun, 7 Apr 2019 01:11:47 +0100	74 lines
Jenkins 5a cctbx Tests build 8116 Fixed	DLS Jenkins	Sat, 6 Apr 2019 23:43:40 +0100	44 lines
Jenkins 5a cctbx Tests build 8115 Unstable	DLS Jenkins	Sat, 6 Apr 2019 23:17:03 +0100	72 lines
[git/cctbx] master: Add 'git clean' instruction (be8de13a6)	CCTBX commit	Sat, 6 Apr 2019 22:04:01 +0100	134 lines
[git/cctbx] master: Move dxtbx to new repository (a7090ae46)	CCTBX commit	Sat, 6 Apr 2019 02:06:15 +0100	1055 lines
[git/cctbx] master: Disentangle dxtbx (0d4875ca3)	CCTBX commit	Sat, 6 Apr 2019 02:05:12 +0100	252 lines
[git/cctbx] master: Add dxtbx to CCIBuilder (cfcc4710b)	CCTBX commit	Sat, 6 Apr 2019 02:05:12 +0100	175 lines
[git/cctbx] master: Implicitly resolve dependencies (c51839276)	CCTBX commit	Sat, 6 Apr 2019 02:05:12 +0100	99 lines
[git/cctbx] master: Set module build dependencies (d1a24b8c4)	CCTBX commit	Sat, 6 Apr 2019 02:05:12 +0100	190 lines
[git/cctbx] master: Add dxtbx to builders that indirectly require it, (41ccc8615)	CCTBX commit	Sat, 6 Apr 2019 02:05:12 +0100	121 lines
[git/cctbx] master: trim to chi1 for RDL (742b1e5e4)	CCTBX commit	Fri, 5 Apr 2019 14:55:21 -0700	158 lines
[git/cctbx] master: quick script to get origin ID (1288d564f)	CCTBX commit	Fri, 5 Apr 2019 14:55:21 -0700	183 lines
[git/cctbx] master: Retaining view orientation between loading different columns. Towards drawing negative values as wireframe spheres (30395f0f7)	CCTBX commit	Fri, 5 Apr 2019 18:21:09 +0100	593 lines
[git/cctbx] master: Use a lookup for imageset index in ExperimentList.to_dict (4382914fc)	CCTBX commit	Fri, 5 Apr 2019 15:22:33 +0100	133 lines
Jenkins 5a cctbx Tests build 8109 Fixed	DLS Jenkins	Fri, 5 Apr 2019 13:08:08 +0100	42 lines
[git/cctbx] master: fix syntax error (aa44fa97a)	CCTBX commit	Fri, 5 Apr 2019 12:53:34 +0100	87 lines
[git/cctbx] master: Generate hashed experiment identifiers. Implement statistics for odd/even experiments. (3b43b4f17)	CCTBX commit	Thu, 4 Apr 2019 17:15:10 -0700	1939 lines
[git/cctbx] master: Fix for incorrect mask for nan values of radii, Using absolute value of data when calculating radii (d1cbb8623)	CCTBX commit	Thu, 4 Apr 2019 20:08:23 +0100	593 lines
[git/cctbx] master: Support multi-image masks in nexus. Resolves #308. (d009153bb)	CCTBX commit	Thu, 4 Apr 2019 08:45:53 -0700	295 lines
[git/cctbx] master: Add multi-image masking to nearly nexus (f75bd6aae)	CCTBX commit	Thu, 4 Apr 2019 08:45:53 -0700	127 lines
[git/cctbx] master: Remove Cthulu's function (cbf101d68)	CCTBX commit	Thu, 4 Apr 2019 11:56:04 +0100	103 lines
[git/cctbx] master: Clean up format/init import/doc (593a5aa63)	CCTBX commit	Thu, 4 Apr 2019 10:22:50 +0100	104 lines
[git/cctbx] master: Change under_base to find conda_base if using conda. Fixes hdf5 plugins and libtbx.require for conda builds. (f8733d106)	CCTBX commit	Wed, 3 Apr 2019 13:22:17 -0700	127 lines
[git/cctbx] master: Update hdf5 version build. Fixes #314. (ab679156d)	CCTBX commit	Wed, 3 Apr 2019 12:43:40 -0700	324 lines
[git/cctbx] master: Restore reveral of slices, but only for the known backwards detectors. Needed for masking. (88bf06d33)	CCTBX commit	Wed, 3 Apr 2019 12:08:01 -0700	234 lines
[git/cctbx] master: also use detect_Rfree() in SetSpaceGroupChoice() (89b6c31b8)	CCTBX commit	Wed, 3 Apr 2019 18:03:29 +0100	375 lines
Jenkins CCTBX Branch Tests branch origin/nexus_multiimage_mask Unstable	DLS Jenkins	Wed, 3 Apr 2019 17:42:46 +0100	91 lines
[git/cctbx] master: Add test (6e4552718)	CCTBX commit	Wed, 3 Apr 2019 09:21:48 -0700	205 lines
[git/cctbx] master: Add load_models to the experiment list factory functions. (f3a80fc6a)	CCTBX commit	Wed, 3 Apr 2019 09:21:48 -0700	489 lines
[git/cctbx] master: Python 2/3 (061c1a09c)	CCTBX commit	Wed, 3 Apr 2019 09:21:48 -0700	122 lines
Jenkins 5a cctbx Tests build 8098 Fixed	DLS Jenkins	Wed, 3 Apr 2019 16:57:41 +0100	43 lines
Jenkins 5a cctbx Tests build 8097 Still Failing	DLS Jenkins	Wed, 3 Apr 2019 16:29:43 +0100	157 lines
[git/cctbx] master: remove GetColumnInfo() provide GetHtmlURL(), GetArrayInfo(), GetMatchingArrayInfo() (f92472b17)	CCTBX commit	Wed, 3 Apr 2019 15:14:20 +0100	858 lines
Jenkins 5a cctbx Tests build 8096 Failure	DLS Jenkins	Wed, 3 Apr 2019 14:42:52 +0100	168 lines
[git/cctbx] master: Use os.pathsep for HDF5 plugin path (e96d385fc)	CCTBX commit	Wed, 3 Apr 2019 14:41:13 +0100	106 lines
Jenkins 5b cctbx MacOS build 3565 Fixed	DLS Jenkins	Wed, 3 Apr 2019 09:07:39 +0100	43 lines
[git/cctbx] master: Fix mask for single still shot This asks for the scan in computing the dynamic mask so only attempt to get dynamic mask if scan is not a false-value (9c38be701)	CCTBX commit	Wed, 3 Apr 2019 08:36:56 +0100	97 lines
Jenkins 5b cctbx MacOS build 3564 Unstable	DLS Jenkins	Wed, 3 Apr 2019 06:38:51 +0100	37 lines
[git/cctbx] master: Minor printout change (42a4379b6)	CCTBX commit	Tue, 2 Apr 2019 13:08:06 -0600	87 lines
Jenkins CCTBX Branch Tests branch origin/nexus_multiimage_mask Still Unstable	DLS Jenkins	Tue, 2 Apr 2019 17:01:53 +0100	106 lines
Jenkins CCTBX Branch Tests branch origin/move_sequence_cif Unstable	DLS Jenkins	Tue, 2 Apr 2019 15:52:51 +0100	39 lines
[git/cctbx] master: Add split_modules_into_asics parameter for swissfel JF16M (6ef6789f3)	CCTBX commit	Mon, 1 Apr 2019 17:01:38 -0700	463 lines
[git/cctbx] master: Deal with mtx file having both unmerged and merged data. Allow starting up without using OS browser but just writing javascript file. Provide GetSpaceGroupChoices(), GetColumnInfo() functions. (bf7f67b33)	CCTBX commit	Mon, 1 Apr 2019 19:34:35 +0100	640 lines
[git/cctbx] master: Add ability to read files directly and to only plot one detector model of many (85954d6f0)	CCTBX commit	Mon, 1 Apr 2019 09:54:07 -0700	186 lines
[git/cctbx] master: removed massimo_jsview_3d.py (0ee80f87a)	CCTBX commit	Mon, 1 Apr 2019 10:42:25 +0100	825 lines
[git/cctbx] master: displaying colour gradient annotated with corresponding column values (b509af5eb)	CCTBX commit	Fri, 29 Mar 2019 17:06:45 +0000	502 lines
[git/cctbx] master: make colour gradient (669919e76)	CCTBX commit	Thu, 28 Mar 2019 19:36:48 +0000	182 lines
[git/cctbx] master: add div element to javascript for displaying colour gradient chart (10676312b)	CCTBX commit	Thu, 28 Mar 2019 18:43:02 +0000	161 lines
[git/cctbx] master: adding SetRadiiToSigmas, SetSqrtScaleRadii, SetSqrtScaleColours functions (ce194ac43)	CCTBX commit	Thu, 28 Mar 2019 18:30:30 +0000	752 lines
[git/cctbx] master: towards colouring complex valued reflections according to phase values (33b7c07f9)	CCTBX commit	Thu, 28 Mar 2019 00:32:02 +0000	534 lines
[git/cctbx] master: Merge branch 'two_new_standard_amino_acids' of github.com:cctbx/cctbx_project into two_new_standard_amino_acids (9524d4026)	CCTBX commit	Wed, 27 Mar 2019 08:40:26 -0700	60 lines
[git/cctbx] master: start of updated AA sequence (c1a038b9e)	CCTBX commit	Wed, 27 Mar 2019 08:40:06 -0700	191 lines
[git/cctbx] master: moved two codes out of modified (4e117b4f5)	CCTBX commit	Wed, 27 Mar 2019 08:40:06 -0700	178 lines
[git/cctbx] master: added ideal geoms for PYL, SEC (8aec603b4)	CCTBX commit	Wed, 27 Mar 2019 08:40:06 -0700	558 lines
[git/cctbx] master: adjusted tests from 2 standard AA (21a5a2b1d)	CCTBX commit	Wed, 27 Mar 2019 08:40:06 -0700	848 lines
[git/cctbx] master: providing phases and sigmas for HKL viewer (1f49c960b)	CCTBX commit	Wed, 27 Mar 2019 13:03:52 +0000	219 lines
[git/cctbx] master: No NaN value for integers so tag these as -424242, When matching indices also extend valarray._sigmas if present (014b44edc)	CCTBX commit	Tue, 26 Mar 2019 18:19:24 +0000	369 lines
[git/cctbx] master: adjusted tests from 2 standard AA (ca555a04c)	CCTBX commit	Thu, 21 Mar 2019 14:32:54 -0700	848 lines
[git/cctbx] master: added ideal geoms for PYL, SEC (7eb69e74b)	CCTBX commit	Thu, 21 Mar 2019 11:20:04 -0700	558 lines
[git/cctbx] master: moved two codes out of modified (85fc5faf9)	CCTBX commit	Wed, 20 Mar 2019 08:48:28 -0700	178 lines
[git/cctbx] master: start of updated AA sequence (d9441a53a)	CCTBX commit	Wed, 20 Mar 2019 08:22:49 -0700	191 lines

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