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Subject	From	Date	Size
[git/cctbx_project] master: fix logic (d180c0ee8f)	CCTBX commit	Tue, 31 May 2022 13:57:07 -0700	137 lines
[git/cctbx_project] master: CI: Switch back to main lunus repository (c63a235e23)	CCTBX commit	Tue, 31 May 2022 11:41:21 -0700	93 lines
[git/cctbx_project] master: Minor correction for full cell volume. (5289475add)	CCTBX commit	Tue, 31 May 2022 09:51:16 +0100	113 lines
[git/cctbx_project] master: clean clutter (392ab8117e)	CCTBX commit	Mon, 30 May 2022 19:07:20 -0600	61 lines
[git/cctbx_project] master: Fix consistency for adding require_match_unit_cell_crystal_symmetry (4219d67193)	CCTBX commit	Mon, 30 May 2022 17:48:09 -0700	242 lines
[git/cctbx_project] master: fix check of uc crystal_symmetry (f0dc1c44a2)	CCTBX commit	Mon, 30 May 2022 17:39:42 -0700	146 lines
[git/cctbx_project] master: Catch case where there are no freeR flags (6d4c558a0f)	CCTBX commit	Mon, 30 May 2022 15:51:20 -0700	105 lines
[git/dxtbx] main: Regenerate all dispatchers when configuring dxtbx (#520) (1aa633a9)	DXTBX commit	Mon, 30 May 2022 14:38:14 +0100	135 lines
[git/cctbx_project] master: clean clutter (fa80383e0b)	CCTBX commit	Sun, 29 May 2022 12:56:40 -0700	61 lines
[git/cctbx_project] master: Allow maps from generate_map that do not match uc crystal_symmetry (c9e0fa3302)	CCTBX commit	Sun, 29 May 2022 12:40:26 -0700	354 lines
[git/cctbx_project] master: Remove unused import (bac7db17fc)	CCTBX commit	Fri, 27 May 2022 11:51:36 -0700	88 lines
[git/cctbx_project] master: moved remove CYS HG from qrefine (3e4b7d5fa4)	CCTBX commit	Thu, 26 May 2022 17:30:44 -0700	146 lines
[git/cctbx_project] master: Test for diffBragg rotation congruency with nanoBragg (CPU only so far) (b1d09ad4f2)	CCTBX commit	Wed, 25 May 2022 19:54:27 -0700	478 lines
[git/cctbx_project] master: Better error handling when users preset_button phil definitions are invalid (8492f2a01c)	CCTBX commit	Wed, 25 May 2022 17:15:03 +0100	269 lines
[git/cctbx_project] master: Use crystal symmetry in gridding in as_map_manager (b35c237700)	CCTBX commit	Wed, 25 May 2022 09:09:50 -0700	90 lines
[git/cctbx_project] master: Update expected output (8dfd18104c)	CCTBX commit	Wed, 25 May 2022 08:11:04 -0700	127 lines
[git/cctbx_project] master: Fix typo (7cffe4d50f)	CCTBX commit	Wed, 25 May 2022 08:04:57 -0700	101 lines
[git/cctbx_project] master: clean clutter (b00775d536)	CCTBX commit	Wed, 25 May 2022 07:57:44 -0600	61 lines
[git/cctbx_project] master: Catch case where density is very unevenly distributed for boxing around density (9329d320ef)	CCTBX commit	Wed, 25 May 2022 06:33:01 -0700	633 lines
[git/cctbx_project] master: better error message (7aaad6da70)	CCTBX commit	Tue, 24 May 2022 10:09:20 -0700	94 lines
[git/cctbx_project] master: Change to a more self-consistent method of keeping track of ordered volume. (7224d1ba7e)	CCTBX commit	Tue, 24 May 2022 17:29:56 +0100	377 lines
[git/cctbx_project] master: Clean clutter (85b04dc374)	CCTBX commit	Tue, 24 May 2022 05:27:53 -0700	61 lines
[git/cctbx_project] master: Catch case where self.file.close is not available in shelx/lexer (86d410e18b)	CCTBX commit	Tue, 24 May 2022 05:06:04 -0700	93 lines
[git/cctbx_project] master: clean clutter (4187b42f7b)	CCTBX commit	Mon, 23 May 2022 12:26:31 -0600	61 lines
[git/cctbx_project] master: Fix density_select by smoothing average density (a10c715c03)	CCTBX commit	Mon, 23 May 2022 11:14:01 -0700	483 lines
[git/cctbx_project] master: Fix so that mtz with map coeffs has the same cell as input request. (a32568c194)	CCTBX commit	Sun, 22 May 2022 11:23:35 +0100	102 lines
[git/cctbx_project] master: More checks (96976327aa)	CCTBX commit	Sat, 21 May 2022 16:07:06 -0700	194 lines
[git/cctbx_project] master: remove unutilized import (faa2413441)	CCTBX commit	Sat, 21 May 2022 13:29:30 -0700	92 lines
[git/cctbx_project] master: Enable DataManager to produce fmodel (25b2fa7f8f)	CCTBX commit	Sat, 21 May 2022 13:17:23 -0700	720 lines
[git/cctbx_project] master: Fix text encoding for python 3 (9a0ea4499f)	CCTBX commit	Sat, 21 May 2022 08:29:52 -0700	106 lines
[git/cctbx_project] master: libtbx: update dispatchers for conda to better handle different environments (14c1ea0019)	CCTBX commit	Fri, 20 May 2022 12:35:23 -0700	147 lines
[git/cctbx_project] master: Bug fix: return as many None's as the call upstream expects (9613d49f6a)	CCTBX commit	Thu, 19 May 2022 13:02:54 -0700	136 lines
[git/cctbx_project] master: Catch missing initialization (02e26cc699)	CCTBX commit	Mon, 16 May 2022 14:35:41 -0700	91 lines
[git/cctbx_project] master: diffBragg, better logger formatting. (9994cd223a)	CCTBX commit	Mon, 16 May 2022 12:39:08 -0700	124 lines
[git/cctbx_project] master: Broadcast parameters rather than parser. (d5e1eb1226)	CCTBX commit	Mon, 16 May 2022 12:32:05 -0700	130 lines
[git/cctbx_project] master: iotbx: add general check for PySide2 (4f1a672e96)	CCTBX commit	Thu, 12 May 2022 22:00:09 -0700	146 lines
[git/cctbx_project] master: call from rosetta_refine somehow managed to go without argv, therefore a safeguard. (64abaf01fc)	CCTBX commit	Wed, 11 May 2022 16:14:54 -0700	91 lines
[git/cctbx_project] master: Update expected output (ee9c3236fa)	CCTBX commit	Wed, 11 May 2022 06:34:52 -0700	151 lines
[git/cctbx_project] master: Require even number of grid points in cubic box dimensions (23b0fb50ac)	CCTBX commit	Tue, 10 May 2022 14:15:06 -0700	257 lines
[git/cctbx_project] master: Add sphere center to returned parameters so this can be used to choose a translation to put the model in the right place after PTF step. (369c8faf35)	CCTBX commit	Tue, 10 May 2022 15:14:43 +0100	93 lines
[git/cctbx_project] master: shifter_templates.py: get psana paths from environment (#759) (cacf4a703c)	CCTBX commit	Mon, 9 May 2022 09:07:35 -0400	152 lines
[git/dxtbx] main: dxtbx 3.9.2 Changelog (26343086)	DXTBX commit	Mon, 9 May 2022 11:12:53 +0100	158 lines
[git/dxtbx] main: Clean Clutter (aad66063)	DXTBX commit	Sun, 8 May 2022 05:12:26 +0100	95 lines
[git/cctbx_project] master: Keep cubic box if present when resampling (4e99281217)	CCTBX commit	Sat, 7 May 2022 18:12:49 -0600	162 lines
[git/cctbx_project] master: Only refine ADP if CCmask filtering is requested (4ab460dcdc)	CCTBX commit	Sat, 7 May 2022 11:40:43 -0700	98 lines
[git/cctbx_project] master: user_vector.label not user_vector.veclabel (0b31ef2933)	CCTBX commit	Sat, 7 May 2022 13:24:34 +0100	119 lines
[git/cctbx_project] master: Now using phil scope user_vector with multiple attribute instead of add_user_vector_hkl_op, add_user_vector_hkl, add_user_vector_abc. This allows user vectors such as a twin operator also to be scripted from a preset button. (fd9ee56e82)	CCTBX commit	Sat, 7 May 2022 13:21:15 +0100	893 lines
[git/cctbx_project] master: filter_experiments_by_rmsd: refactor with boilerplate (e8cc57135c)	CCTBX commit	Fri, 6 May 2022 15:15:53 -0700	651 lines
[git/cctbx_project] master: Allow cubic box, writing out starting boxed maps, and adding soft mask to edges of output maps in resolve_cryo_em (0892c00967)	CCTBX commit	Fri, 6 May 2022 15:39:22 -0600	1343 lines
[git/cctbx_project] master: small_cell: limit calls to bronk2 (#760) (2135d35e1f)	CCTBX commit	Fri, 6 May 2022 16:14:55 -0400	137 lines
[git/cctbx_project] master: spotfinder_radial_average: fix and improve split_panels plot (88febbe796)	CCTBX commit	Fri, 6 May 2022 11:30:03 -0700	118 lines
[git/cctbx_project] master: Add two methods implemented to get fraction of sphere that has been masked as containing ordered volume. The slow method agrees with the fast one (using a spherically-averaged map) to 4 decimal places, so only use the fast one! (6766dbbad6)	CCTBX commit	Fri, 6 May 2022 13:23:55 +0100	247 lines
[git/dxtbx] main: MNT: Update GitHub workflow branch syntax (1ea59627)	DXTBX commit	Fri, 6 May 2022 12:04:22 +0100	107 lines
[git/cctbx_project] master: Recover stage dimensions in case HKLJavaScripts.onMessage() crashed and failed returning cameraPosZ (c69f9cd71a)	CCTBX commit	Fri, 6 May 2022 10:40:50 +0100	101 lines
[git/cctbx_project] master: XFEL GUI speedups (d87a9f5588)	CCTBX commit	Thu, 5 May 2022 16:57:29 -0700	490 lines
[git/cctbx_project] master: clean clutter (3fd778e030)	CCTBX commit	Thu, 5 May 2022 16:03:42 -0700	61 lines
[git/cctbx_project] master: Don't stop if no residues obtained (bc5ba664dd)	CCTBX commit	Thu, 5 May 2022 14:30:50 -0700	241 lines
[git/dxtbx] main: Fix utf-8 encoding error for .sfrm files (#518) (58054f30)	DXTBX commit	Thu, 5 May 2022 19:05:52 +0000	144 lines
[git/cctbx_project] master: clean clutter (ebf8bc5411)	CCTBX commit	Thu, 5 May 2022 12:01:04 -0700	61 lines
[git/cctbx_project] master: Set unit_cell crystal symmetry when necessary (ab5a17a15d)	CCTBX commit	Thu, 5 May 2022 11:03:35 -0700	212 lines
[git/cctbx_project] master: Add additional error catch to xfel_db (9ca3d67671)	CCTBX commit	Thu, 5 May 2022 10:05:55 -0700	96 lines
[git/cctbx_project] master: detector_residuals: add 2D histogram of delta psi vs. 2theta (056cee59fc)	CCTBX commit	Thu, 5 May 2022 10:04:57 -0700	264 lines
[git/cctbx_project] master: cosmetics (3321a6e072)	CCTBX commit	Thu, 5 May 2022 17:58:33 +0100	575 lines
[git/dxtbx] main: nxmx/dlsnxs2cbf fixes for screening images (#514) (50766d32)	DXTBX commit	Thu, 5 May 2022 14:16:45 +0100	845 lines
[git/cctbx_project] master: To avoid deadlock make sure python releases any pending sempahores if HKLJavaScripts.onMessage() catches an error when trying to display garbage (00428bf6de)	CCTBX commit	Thu, 5 May 2022 13:10:55 +0100	127 lines
[git/cctbx_project] master: Don't make info_tuples (which can be time consuming) if a dataset created from miller_array_operation has alreqady been created (edbd867c99)	CCTBX commit	Thu, 5 May 2022 10:34:02 +0100	180 lines
[git/cctbx_project] master: Check that ids for preset buttons are unique (8d05e7dffb)	CCTBX commit	Thu, 5 May 2022 10:34:01 +0100	110 lines
[git/cctbx_project] master: cctbx.xfel: fix icon files to prevent libpng warnings (335ad501b6)	CCTBX commit	Wed, 4 May 2022 16:40:30 -0400	474 lines
[git/cctbx_project] master: xfel gui: don't crash on mySQL new thread error (43fe4f54cd)	CCTBX commit	Wed, 4 May 2022 15:51:35 -0400	92 lines
[git/cctbx_project] master: small_cell_process: update program defaults (b65925db71)	CCTBX commit	Wed, 4 May 2022 15:46:40 -0400	91 lines
[git/cctbx_project] master: cctbx.xfel.upload_mtz: option to skip mtz file (783e6cf0ff)	CCTBX commit	Wed, 4 May 2022 15:41:04 -0400	117 lines
[git/cctbx_project] master: Turn off testing python 3.7 in XFEL CI (93c1da79cf)	CCTBX commit	Wed, 4 May 2022 10:59:26 -0700	102 lines
[git/cctbx_project] master: Add F/SigF, I/SigI and E-values to default preset-buttons. Remove dead code. (5ce532a1f3)	CCTBX commit	Wed, 4 May 2022 18:34:32 +0100	709 lines
[git/cctbx_project] master: cctbx.xfel: make default rungroup only contain 1 run (#757) (c0e36c0787)	CCTBX commit	Wed, 4 May 2022 12:19:20 -0400	112 lines
[git/cctbx_project] master: self.viewerparams is now self.params.hkls (03c6262995)	CCTBX commit	Wed, 4 May 2022 09:51:57 +0100	1232 lines
[git/cctbx_project] master: More changes to PHIL definitions: Now using bin_opacity with the "multiple" attribute rather than bin_opacities being a list of tuples cast to a string. scene_bin_thresholds changed to floats rather than a list cast to a string. (af3c6fe3a4)	CCTBX commit	Wed, 4 May 2022 09:51:57 +0100	1688 lines
[git/cctbx_project] master: More controls, ADP refinement, more selecton criteria (0488155d3c)	CCTBX commit	Tue, 3 May 2022 18:47:02 -0700	467 lines
[git/cctbx_project] master: CI: update CI to match cache (0be5f20c9a)	CCTBX commit	Tue, 3 May 2022 12:06:01 -0700	91 lines
[git/cctbx_project] master: small_cell: documentation for new GSASII installation procedure (c7fba8a29d)	CCTBX commit	Tue, 3 May 2022 08:23:23 -0700	186 lines
[git/cctbx_project] master: better documentation for gsasii installation (b5ae386bb2)	CCTBX commit	Mon, 2 May 2022 21:44:26 -0400	93 lines
[git/cctbx_project] master: CI: start macOS 12 builds (3618719fd2)	CCTBX commit	Mon, 2 May 2022 09:09:56 -0700	132 lines
[git/cctbx_project] tag 'v2022.4' created	CCTBX commit	Mon, 2 May 2022 00:30:50 -0700	40 lines
[git/cctbx_project] master: Update CHANGELOG.rst for 2022.4 release (f6086b1740)	CCTBX commit	Mon, 2 May 2022 00:30:50 -0700	93 lines

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May 2022

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