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[git/cctbx] master: Update list of tests in mmtbx run_tests. (67c257e7d)
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Wed, 31 May 2017 12:20:21 -0700 |
72 lines |
[git/cctbx] master: Add test for polder validation CCs. (3bc079485)
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Wed, 31 May 2017 12:06:59 -0700 |
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[git/cctbx] master: Validation: added attribute for FSC (87729f51d)
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Tue, 30 May 2017 15:34:12 -0700 |
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[git/cctbx] master: small fix for ligand handling (a6e6ea606)
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Tue, 30 May 2017 14:26:13 -0700 |
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[git/cctbx] master: brehm diederichs will fail if no twin laws, so fail earlier with clearer message (32929bbc0)
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Tue, 30 May 2017 10:55:54 +0100 |
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[git/cctbx] master: Add test for compute polder within box. (ac2f91e6c)
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Fri, 26 May 2017 14:46:33 -0700 |
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[git/cctbx] master: Add feature to compute polder map within box of selected atoms. (1edcf2aa7)
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Fri, 26 May 2017 14:44:31 -0700 |
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[git/cctbx] master: Separate input from cl run. (d81658e6c)
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Thu, 25 May 2017 15:55:58 -0700 |
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[git/cctbx] master: MI: fixed work with ligands, test. adjusted stderr output. (8d21ce307)
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Thu, 25 May 2017 15:38:42 -0700 |
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[git/cctbx] master: Test for MI (36b5c4136)
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Thu, 25 May 2017 15:38:42 -0700 |
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[git/cctbx] master: Bugfix with test (b91b07525)
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Thu, 25 May 2017 15:38:27 -0700 |
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[git/cctbx] master: Added xtc_dir and calib_dir options. Fixed error of psana.Run being passed instead of psana.Event / int for psana.Detector.mask function call (5da3ef262)
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Thu, 25 May 2017 13:28:03 -0700 |
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[git/cctbx] master: history no longer applies (13813019c)
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Thu, 25 May 2017 09:37:03 +0100 |
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[git/cctbx] master: dxtbx: actually read beam x, y from image header in DLS I23 detector format (a3b9d83ba)
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Thu, 25 May 2017 08:51:30 +0100 |
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[git/cctbx] master: Minor corrections. (e0a2c7fb0)
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Wed, 24 May 2017 16:40:15 -0700 |
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[git/cctbx] master: Installation: work with per user site-packages directory (2551739ee)
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Wed, 24 May 2017 16:35:49 -0700 |
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[git/cctbx] master: Bugfixes for cxi.fee_view if no dark image available (9508bf525)
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Wed, 24 May 2017 16:29:44 -0700 |
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[git/cctbx] master: Beautiful finding. (364cc7fc4)
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Wed, 24 May 2017 15:23:39 -0700 |
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[git/cctbx] master: Print output from all images, and note resolution cutoff imposed. (add4ae7bd)
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Wed, 24 May 2017 13:30:47 -0700 |
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[git/cctbx] master: Move log output to polder command line. (5f0ddfab8)
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Wed, 24 May 2017 10:09:40 -0700 |
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[git/cctbx] master: Add residuals.recompute_outliers. (4329c75f6)
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Wed, 24 May 2017 09:58:55 -0700 |
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[git/cctbx] master: Add new plot: observations-predictions colored by average per-pixel energy for the reflection (baca69885)
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Wed, 24 May 2017 09:58:55 -0700 |
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[git/cctbx] master: dxtbx: bug fix for DLS I23 detector format, particularly affecting non-zero detector offsets (d7ae073e7)
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Wed, 24 May 2017 13:12:49 +0100 |
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[git/cctbx] master: First step towards separating class and command line for polder. (114db85f0)
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Tue, 23 May 2017 17:15:32 -0700 |
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[git/cctbx] master: MI: output pkl if debug (bf1712123)
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Tue, 23 May 2017 15:37:52 -0700 |
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[git/cctbx] master: merge functionality for group_args with tests. (a879ed294)
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Tue, 23 May 2017 15:37:52 -0700 |
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[git/cctbx] master: If external symmetry is given, then existing scale matrix is unlikely to be consitent. (18dad0e7a)
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Tue, 23 May 2017 15:00:37 -0700 |
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[git/cctbx] master: Avoid storing unnecessary objects (0cb048b8b)
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Tue, 23 May 2017 15:00:37 -0700 |
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[git/cctbx] master: Revert ADP refinement to be per chain; also use soft masking. (352c510a4)
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Tue, 23 May 2017 15:00:37 -0700 |
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[git/cctbx] master: Allow pdb_inp; add shift_back ad hoc function (8c7d1af76)
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Tue, 23 May 2017 15:00:37 -0700 |
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[git/cctbx] master: This is sort of removing outliers as well. (3d967053a)
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Tue, 23 May 2017 15:00:37 -0700 |
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[git/cctbx] master: Writing polder as class. (01de65bfa)
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Tue, 23 May 2017 13:44:27 -0700 |
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[git/cctbx] master: Centos 5 compile fix (030178ec5)
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Tue, 23 May 2017 09:34:21 -0700 |
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[git/cctbx] master: dxtbx DataBlockTemplateImporter kwargs bug fix (fixes #36) (e7078add8)
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Tue, 23 May 2017 13:17:31 +0100 |
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[git/cctbx] master: more informative error message (8b4d8d1e1)
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Tue, 23 May 2017 10:31:06 +0100 |
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[git/cctbx] master: Installation: build OpenSSL for Linux as well; addresses compatibility issues with binary installers (c08805471)
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Mon, 22 May 2017 16:18:43 -0700 |
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[git/cctbx] master: Add repeat_until_converged=True to dxtbx.detector_superpose (c6debc89d)
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Mon, 22 May 2017 11:21:02 -0700 |
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Jenkins 5a cctbx Tests build 4412 Fixed
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Mon, 22 May 2017 11:56:28 +0100 |
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[git/cctbx] master: Added check for exception (1626c8d97)
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Mon, 22 May 2017 11:49:35 +0100 |
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Jenkins 5a cctbx Tests build 4411 Unstable
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Mon, 22 May 2017 10:47:03 +0100 |
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Jenkins 5a cctbx Tests build 4411 Unstable
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Mon, 22 May 2017 10:47:03 +0100 |
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[git/cctbx] master: Use simple method for 1 panel inscribed resolution (3f40d46d0)
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Mon, 22 May 2017 10:38:46 +0100 |
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[git/cctbx] master: added image masking (a379b4e51)
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Fri, 19 May 2017 18:47:19 -0700 |
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[git/cctbx] master: Fixing weight/sigma confusion on edits.parallelity (e821cf719)
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Fri, 19 May 2017 15:58:01 -0700 |
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[git/cctbx] master: Fixing planarity as well, test. (87922f075)
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Fri, 19 May 2017 14:12:47 -0700 |
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[git/cctbx] master: Fix bug with geometry_restraints.edits.parallelity, add test. (7789ceb0a)
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Fri, 19 May 2017 13:11:50 -0700 |
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Jenkins 5a cctbx Tests build 4403 Fixed
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Thu, 18 May 2017 23:39:03 +0100 |
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[git/cctbx] master: add bond/angle rmsd (8d5acb2e3)
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Thu, 18 May 2017 15:33:50 -0700 |
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Jenkins 5a cctbx Tests build 4402 Unstable
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Thu, 18 May 2017 23:33:23 +0100 |
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[git/cctbx] master: add bond/angle rmsd (ef81d300f)
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Thu, 18 May 2017 15:27:44 -0700 |
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[git/cctbx] master: add bond/angle rmsd (a12a5246c)
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Thu, 18 May 2017 15:12:05 -0700 |
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[git/cctbx] master: Updated --calib_dir to --pickle_calib_dir; --calib_dir now for all cases for non standard calibration folder location (7382fc566)
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Thu, 18 May 2017 13:06:06 -0700 |
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[git/cctbx] master: Remove oneliner (d1555af92)
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Thu, 18 May 2017 10:37:55 -0700 |
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[git/cctbx] master: Added padding parameter (76ebaaebb)
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Thu, 18 May 2017 09:03:20 +0100 |
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[git/cctbx] master: map_box.py: modifications for GUI (cf96efc96)
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Wed, 17 May 2017 15:38:21 -0700 |
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[git/cctbx] master: Replace ncs operators refinement with rigid-body refinement. (c90b2586b)
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Wed, 17 May 2017 14:21:34 -0700 |
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[git/cctbx] master: Check for psana environment and raise import error if not found. (0bc7cdadd)
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Wed, 17 May 2017 11:31:02 -0700 |
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[git/cctbx] master: Change mm to microns for some of the columns (964a720a7)
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Wed, 17 May 2017 11:20:37 -0700 |
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[git/cctbx] master: Revert de7005e21b335b8316671567624b299ce48db34f until we are officially moved off of the psana build system at LCLS onto conda (5abe4ba36)
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Wed, 17 May 2017 10:32:47 -0700 |
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[git/cctbx] master: add miller! (9659a9753)
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Wed, 17 May 2017 09:19:34 -0700 |
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[git/cctbx] master: Bug fix: fcalc sphere->box; result is unlikely to be visible in practice (e6194e22e)
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Wed, 17 May 2017 09:11:39 -0700 |
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[git/cctbx] master: Don't mask import errors, as things will only fail further down the line. If you really need to ignore import errors probably better to do something along the lines of (de7005e21)
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Wed, 17 May 2017 15:18:09 +0100 |
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[git/cctbx] master: dxtbx.serialize.xds: setup ParallaxCorrectedPxMmStrategy in case of EIGER as well as PILATUS, or when SILICON= was given. (4495975b3)
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Wed, 17 May 2017 18:55:52 +0900 |
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[git/cctbx] master: Need to repredict. Predictions in reflection table from refinement doesn't seem to have been updated (including delta psi values). (3e109abe7)
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Tue, 16 May 2017 17:13:17 -0700 |
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[git/cctbx] master: Original pickle file ended up huge in size. Correcting for this. (7583615f2)
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Tue, 16 May 2017 16:22:56 -0700 |
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[git/cctbx] master: bugfix to plot display (40dc07826)
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Tue, 16 May 2017 16:09:41 -0700 |
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[git/cctbx] master: Don't redownload if valid file present even with SSL errors. Related to #33 (6563f00b5)
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Tue, 16 May 2017 08:52:47 +0100 |
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[git/cctbx] master: Fixes #33 (537f7d77f)
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Tue, 16 May 2017 08:26:14 +0100 |
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[git/cctbx] master: MI: option for pickling, briefly tested. (0242058d5)
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Mon, 15 May 2017 17:38:16 -0700 |
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[git/cctbx] master: Installation: temporary fix for building base dependencies on macOS using system Python; use curl to download files if https url fails to open in Python (0ca0920fb)
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Mon, 15 May 2017 17:12:19 -0700 |
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[git/cctbx] master: changing CCs to five_cc and store them for future pickling (487e75dd9)
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Mon, 15 May 2017 17:06:56 -0700 |
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[git/cctbx] master: Bugfixes for cspad.detector_congruence2 (4fc05b4fc)
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Mon, 15 May 2017 13:28:22 -0700 |
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[git/cctbx] master: bug fix: gracefully handle situation where DYLD_LIBRARY_PATH may not be defined (491af3c92)
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Mon, 15 May 2017 13:20:26 -0700 |
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[git/cctbx] master: Add bond to GRM: make sure to add bond to the same copy, not symmetry-related one if possible. With tests. (57b314960)
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Fri, 12 May 2017 15:25:56 -0700 |
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[git/cctbx] master: Revive max_events for striping. (eec34b0fa)
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Fri, 12 May 2017 10:10:01 -0700 |
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[git/cctbx] master: Add smd-read feature. (83c331d0e)
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Fri, 12 May 2017 10:10:01 -0700 |
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[git/cctbx] master: inserting fixing rotamers in between steps (10f64813f)
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Wed, 10 May 2017 16:38:10 -0700 |
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[git/cctbx] master: separating function into two, add new parameter (d8b86eb73)
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Wed, 10 May 2017 16:38:10 -0700 |
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[git/cctbx] master: fixing rotamer in SS idealization - parameter. Off in many tests. adjusting tests for early exit strategy in MI (69ba3b20e)
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Wed, 10 May 2017 16:38:10 -0700 |
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[git/cctbx] master: Restructure MCL superpose ideal ligand to use restraints coordinates (868a44aef)
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Wed, 10 May 2017 14:07:27 -0700 |
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[git/cctbx] master: adding hydrogen bond angles for sheets (616616aa9)
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Wed, 10 May 2017 11:27:56 -0700 |
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[git/cctbx] master: Changing test to acknowledge hbond angles in sheets (9ba924a2f)
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Wed, 10 May 2017 11:27:56 -0700 |
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[git/cctbx] master: Check shared ptr is not NULL before dereference (58494cc8f)
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Wed, 10 May 2017 13:31:27 +0100 |
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Jenkins 5a cctbx Tests build 4363 Fixed
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Tue, 9 May 2017 23:46:36 +0100 |
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[git/cctbx] master: Web tools: updated test (0fce7cf1f)
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Tue, 9 May 2017 15:40:23 -0700 |
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Jenkins 5a cctbx Tests build 4362 Unstable
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Tue, 9 May 2017 23:34:05 +0100 |
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Jenkins 5a cctbx Tests build 4362 Unstable
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Tue, 9 May 2017 23:34:03 +0100 |
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[git/cctbx] master: Web tools: prevent potentially malformed text from being printed to avoid cross-site scripting issues (c62041639)
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Tue, 9 May 2017 15:27:03 -0700 |
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[git/cctbx] master: PDBTools: bug fixes for output filename not being returned and log output not appearing in GUI window (3e63a9734)
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Mon, 8 May 2017 16:48:06 -0700 |
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[git/cctbx] master: Validation GUI: updated real-space correlation code to use restructured mmtbx/maps/map_model_cc.py code (dafc6963f)
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Mon, 8 May 2017 15:17:55 -0700 |
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[git/cctbx] master: map_model_cc: bug fix for reporting chain id; added additional information for GUI (9257a2bf3)
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Mon, 8 May 2017 15:15:44 -0700 |
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[git/cctbx] master: Allow output filename for dxtbx.detector_superpose (55c1c307a)
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Mon, 8 May 2017 14:18:23 -0700 |
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[git/cctbx] master: Add column 'Lab dNorm': angle between normal vectors of panels being compared in lab space (b25cd8241)
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Mon, 8 May 2017 09:33:22 -0700 |
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[git/cctbx] master: Support negative indexing in experiment list from python side (f791b9621)
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Mon, 8 May 2017 09:19:17 +0100 |
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[git/cctbx] master: dxtbx.detector_superpose improvements (52f63a12e)
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Fri, 5 May 2017 13:27:43 -0700 |
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[git/cctbx] master: Bugfix (bc11c0e2a)
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Thu, 4 May 2017 17:22:59 -0700 |
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[git/cctbx] master: Fix warnings (2429600d4)
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Thu, 4 May 2017 16:52:17 -0700 |
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[git/cctbx] master: Fix warnings and compile error on centos 5 (d94b30772)
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Thu, 4 May 2017 16:46:17 -0700 |
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[git/cctbx] master: Clean up a bit (493ca598c)
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Thu, 4 May 2017 11:39:22 -0700 |
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[git/cctbx] master: Add refinement to striping. Refactor phil parsing. (01680adf6)
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Thu, 4 May 2017 11:23:02 -0700 |
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[git/cctbx] master: pass extracted params (768d687dd)
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Thu, 4 May 2017 09:52:13 -0700 |
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[git/cctbx] master: Graeme's case problem (feb27cfa6)
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Thu, 4 May 2017 08:41:58 +0100 |
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Jenkins 5a cctbx Tests build 4342 Fixed
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Thu, 4 May 2017 08:26:24 +0100 |
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[git/cctbx] master: SyntaxError. (aba71ceb6)
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Thu, 4 May 2017 08:20:53 +0100 |
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Jenkins 5a cctbx Tests build 4340 Unstable
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Thu, 4 May 2017 07:50:35 +0100 |
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[git/cctbx] master: Revert changes; will revisit (0cf03f132)
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Thu, 4 May 2017 07:50:32 +0100 |
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[git/cctbx] master: Correct format (9e615ee84)
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Thu, 4 May 2017 07:43:49 +0100 |
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[git/cctbx] master: Case sensitive workaround; if not configure and is Configure use latter (f6298adb5)
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Thu, 4 May 2017 07:36:19 +0100 |
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[git/cctbx] master: Resolve ambiguity for boost vs. xcode isnan (compile error not on xcode on 10.9 but is on 10.10+) (a8fb330f6)
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Wed, 3 May 2017 16:39:23 -0700 |
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[git/cctbx] master: simtbx doesn't depend on dials. Remove dependency from libtbx_config (996eea713)
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Wed, 3 May 2017 15:56:16 -0700 |
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[git/cctbx] master: one more mac-specific fix (066120c58)
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Wed, 3 May 2017 15:50:01 -0700 |
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[git/cctbx] master: one more nan definition for macs (548351974)
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Wed, 3 May 2017 15:37:16 -0700 |
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[git/cctbx] master: Holton blessing Aaron's changes (ea47d9469)
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Wed, 3 May 2017 15:25:44 -0700 |
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[git/cctbx] master: Re-add simtbx as optional dependency to xfel. (740b4b2d8)
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Wed, 3 May 2017 15:18:13 -0700 |
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[git/cctbx] master: Use boost isnan instead of a wonky ifdef (1a03dd76e)
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Wed, 3 May 2017 15:05:16 -0700 |
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[git/cctbx] master: ifdef for windows vs. mac (f22c33023)
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Wed, 3 May 2017 14:54:58 -0700 |
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[git/cctbx] master: updated standalone for consistency with mainline (62fb56777)
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Wed, 3 May 2017 14:50:29 -0700 |
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[git/cctbx] master: Putative fixes to compile on windows. (adb332f00)
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Wed, 3 May 2017 14:43:40 -0700 |
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[git/cctbx] master: Compile fixes for mac. (6e8cf6d0f)
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Wed, 3 May 2017 09:36:37 -0700 |
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[git/cctbx] master: more revert (e93991fd4)
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Wed, 3 May 2017 08:59:31 -0700 |
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[git/cctbx] master: Revert until some compile errors are fixed (c706baa6b)
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Wed, 3 May 2017 08:35:08 -0700 |
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[git/cctbx] master: fixed sign of detector distance for predicted dials origin. Didn't I just do this? (89136de75)
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Wed, 3 May 2017 07:41:13 -0700 |
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Jenkins 5a cctbx Tests build 4323 Fixed
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Wed, 3 May 2017 11:45:53 +0100 |
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Jenkins 5a cctbx Tests build 4322 Still Failing
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Wed, 3 May 2017 11:36:12 +0100 |
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Jenkins 5a cctbx Tests build 4321 Failure
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Wed, 3 May 2017 09:31:28 +0100 |
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[git/cctbx] master: Hook up tests for simtbx to cctbx_regression.test_nightly (2484ac6e9)
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Tue, 2 May 2017 15:37:27 -0700 |
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[git/cctbx] master: Optional dependency for xfel: simtbx (9b8524fc4)
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Tue, 2 May 2017 15:23:17 -0700 |
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[git/cctbx] master: Modified a depreciated method (c33380a5a)
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Tue, 2 May 2017 12:47:22 -0700 |
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Jenkins 5b cctbx MacOS build 1238 Fixed
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Jenkins Build Server (Diamond) |
Tue, 2 May 2017 16:26:14 +0100 |
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[git/cctbx] master: Add reader for 8-bit streams (cd1001cd5)
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CCTBX Commit via DLS Jenkins |
Tue, 2 May 2017 14:14:18 +0100 |
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[git/cctbx] master: One more try to get bitshuffle to compile... (1efcf6f09)
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CCTBX Commit via DLS Jenkins |
Tue, 2 May 2017 14:07:53 +0100 |
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[git/cctbx] master: Remove built_*() methods. (cdb33d113)
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CCTBX Commit via DLS Jenkins |
Tue, 2 May 2017 11:48:39 +0100 |
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[git/cctbx] master: More bitshuffle fixes (6fd62d7d9)
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CCTBX Commit via DLS Jenkins |
Tue, 2 May 2017 10:00:12 +0100 |
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[git/cctbx] master: suggested 'fix' for bitshuffle. See discussion in #25, but really unrelated to that issue. (b8ad015ba)
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CCTBX Commit via DLS Jenkins |
Tue, 2 May 2017 09:36:25 +0100 |
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[git/cctbx] master: Don't test installation when not installing (800f3e2f7)
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CCTBX Commit via DLS Jenkins |
Tue, 2 May 2017 08:27:51 +0100 |
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[git/cctbx] master: Base: update to Python 2.7.13; added certifi package for macOS (>= 10.11) to provide root certificates so that OpenSSL works (8b3820d2b)
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CCTBX Commit via DLS Jenkins |
Mon, 1 May 2017 16:08:49 -0700 |
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[git/cctbx] master: Failure unification (e4645ac6f)
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CCTBX Commit via DLS Jenkins |
Mon, 1 May 2017 13:34:15 -0700 |
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[git/cctbx] master: disable debug pickling (0852045e2)
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CCTBX Commit via DLS Jenkins |
Mon, 1 May 2017 12:04:28 -0700 |
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[git/cctbx] master: Better filename determination (b800c8f03)
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CCTBX Commit via DLS Jenkins |
Mon, 1 May 2017 12:03:20 -0700 |
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[git/cctbx] master: more info (e7416befb)
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CCTBX Commit via DLS Jenkins |
Mon, 1 May 2017 12:03:20 -0700 |
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[git/cctbx] master: debug pikle output (5b427b27d)
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CCTBX Commit via DLS Jenkins |
Mon, 1 May 2017 12:03:20 -0700 |
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[git/cctbx] master: Safer use of normalize() (390348923)
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CCTBX Commit via DLS Jenkins |
Mon, 1 May 2017 12:03:20 -0700 |
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