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Subject	From	Date	Size
[git/cctbx_project] master: fix typo in help text (9adb0d6fda)	CCTBX commit	Thu, 31 Aug 2023 09:15:36 +1000	102 lines
[git/cctbx_project] master: cctbx: only run test if chem_data is available (07adc92190)	CCTBX commit	Wed, 30 Aug 2023 13:29:28 -0700	91 lines
[git/cctbx_project] master: Clarify comparison (0c9dec58e6)	CCTBX commit	Wed, 30 Aug 2023 12:50:29 -0600	97 lines
[git/cctbx_project] master: Fix consistency check for space group in cif/builders (c139f59e49)	CCTBX commit	Wed, 30 Aug 2023 12:07:52 -0600	129 lines
[git/cctbx_project] master: small change (b0047ee354)	CCTBX commit	Tue, 29 Aug 2023 21:46:01 -0700	96 lines
[git/cctbx_project] master: Bug fix, speedup and generalization (7c62d8b5d6)	CCTBX commit	Tue, 29 Aug 2023 15:27:38 -0700	1491 lines
[git/cctbx_project] master: Fix typo in doc string (d8aa8fc79c)	CCTBX commit	Tue, 29 Aug 2023 15:48:00 -0600	97 lines
[git/cctbx_project] master: clean clutter, add json_exchange class and fix errors (889d62ce4b)	CCTBX commit	Tue, 29 Aug 2023 13:11:13 -0700	432 lines
[git/cctbx_project] master: modify omegalyze program to use get_results (dd391499d0)	CCTBX commit	Tue, 29 Aug 2023 14:02:13 -0400	260 lines
[git/cctbx_project] master: Reduce2 speed (#921) (12195abaa1)	CCTBX commit	Sat, 26 Aug 2023 07:20:04 -0400	523 lines
[git/cctbx_project] master: return reverse shift but not the function (451eefd139)	CCTBX commit	Fri, 25 Aug 2023 18:13:03 -0700	202 lines
[git/cctbx_project] master: Catch None (5f809d8fbd)	CCTBX commit	Fri, 25 Aug 2023 18:52:24 -0600	109 lines
[git/cctbx_project] master: TNCS -> tNCS (82799b5dbb)	CCTBX commit	Fri, 25 Aug 2023 12:47:01 +0100	614 lines
[git/cctbx_project] master: added an option for probing ions (38516af9de)	CCTBX commit	Thu, 24 Aug 2023 17:57:28 -0700	357 lines
[git/cctbx_project] master: moved parameters for freezing to one choice parameter (bc8df4f3bf)	CCTBX commit	Thu, 24 Aug 2023 16:13:18 -0700	368 lines
[git/cctbx_project] master: lots of changes for a start at changing the PHIL (447020c52a)	CCTBX commit	Thu, 24 Aug 2023 14:58:26 -0700	577 lines
[git/cctbx_project] master: added a function parameter to help with QMR (0bac01020e)	CCTBX commit	Thu, 24 Aug 2023 14:57:15 -0700	143 lines
[git/cctbx_project] master: default for description filename (a437d53b20)	CCTBX commit	Thu, 24 Aug 2023 11:07:42 -0700	105 lines
[git/cctbx_project] master: send all to log (088b157a70)	CCTBX commit	Thu, 24 Aug 2023 11:05:39 -0700	96 lines
[git/dxtbx] main: Fix pkg_resources->importlib performance regression (#658) (2fc8ffad)	DXTBX commit	Thu, 24 Aug 2023 10:20:43 +0100	213 lines
[git/cctbx_project] master: Align tranche reports with 4 cosets-space group P3 (887a91bb16)	CCTBX commit	Wed, 23 Aug 2023 13:53:52 -0700	493 lines
[git/cctbx_project] master: Allow the use of Fcalc for isomorphous reference (a09069c307)	CCTBX commit	Wed, 23 Aug 2023 13:51:52 -0700	140 lines
[git/cctbx_project] master: Brehm-Diederichs embedding plot in 4D, for SG=P3 (d7ad3541de)	CCTBX commit	Wed, 23 Aug 2023 13:49:33 -0700	296 lines
[git/cctbx_project] master: Change expected output (6d8c941c1d)	CCTBX commit	Tue, 22 Aug 2023 10:27:13 -0700	96 lines
[git/cctbx_project] master: CI: speed up environment creation (7f3161be95)	CCTBX commit	Mon, 21 Aug 2023 11:55:09 -0700	139 lines
[git/cctbx_project] master: UC histograms: optionally set angle ranges (#919) (05090f426e)	CCTBX commit	Mon, 21 Aug 2023 14:03:09 -0400	296 lines
[git/cctbx_project] master: CI: update conda (df9f81490a)	CCTBX commit	Mon, 21 Aug 2023 09:25:56 -0700	98 lines
[git/cctbx_project] master: first commit for barbed_wire_analysis tool (2fa5d6dfb0)	CCTBX commit	Fri, 18 Aug 2023 13:18:42 -0400	1680 lines
[git/cctbx_project] master: allow copying table of datasets and binning table to clipboard (48b4e21791)	CCTBX commit	Thu, 17 Aug 2023 23:47:57 +0100	280 lines
[git/cctbx_project] master: silly (436b0a92f3)	CCTBX commit	Thu, 17 Aug 2023 13:54:06 -0700	98 lines
[git/cctbx_project] master: bootstrap: update some defaults for molprobity builder (39180c7b4e)	CCTBX commit	Thu, 17 Aug 2023 13:12:16 -0700	102 lines
[git/cctbx_project] master: check for missing keys (12f06eeaa0)	CCTBX commit	Thu, 17 Aug 2023 12:40:06 -0700	93 lines
[git/dxtbx] main: Clean Clutter (9657a162)	DXTBX commit	Thu, 17 Aug 2023 20:08:48 +0100	124 lines
[git/cctbx_project] master: removed duplicate mean calculation code (b376d78ce4)	CCTBX commit	Thu, 17 Aug 2023 14:34:21 -0400	351 lines
[git/dxtbx] main: Remove Datablock (#570) (6185cc38)	DXTBX commit	Thu, 17 Aug 2023 11:50:04 +0100	127 lines
[git/cctbx_project] master: bug fix when adding a complex array to existing datasets (7f4dfb6c87)	CCTBX commit	Wed, 16 Aug 2023 23:40:22 +0100	135 lines
[git/cctbx_project] master: 0 works better (602cf20bc3)	CCTBX commit	Wed, 16 Aug 2023 14:00:53 -0700	91 lines
[git/cctbx_project] master: Avoid division by zero (9a51d0c64a)	CCTBX commit	Wed, 16 Aug 2023 13:56:42 -0700	118 lines
[git/cctbx_project] master: Report rotamer favored and allowed statistics (fcf19f9aea)	CCTBX commit	Wed, 16 Aug 2023 13:44:35 -0700	200 lines
[git/cctbx_project] master: Output mmCIF model in geometry_minimization. Placeholder function in the model manager. (b02e654ef5)	CCTBX commit	Wed, 16 Aug 2023 12:06:04 -0700	170 lines
[git/cctbx_project] master: Refactor out ph.as_pdb_input() usage in this case. The shift_and_box_model() treats arguments better - not changing input model. (3da8b49e9a)	CCTBX commit	Wed, 16 Aug 2023 12:05:09 -0700	270 lines
[git/dxtbx] main: Add sample to source distance to Beam (#622) (831061fe)	DXTBX commit	Wed, 16 Aug 2023 14:23:45 +0100	2037 lines
[git/cctbx_project] master: general changes including adding nproc for radius steps (616747c967)	CCTBX commit	Tue, 15 Aug 2023 16:15:18 -0700	1245 lines
[git/cctbx_project] master: Small cell fixes (#914) (df7b157872)	CCTBX commit	Tue, 15 Aug 2023 13:42:51 -0700	1004 lines
[git/cctbx_project] master: bug fix for wrong sign on bond/angles validation for json output (05807b0eb0)	CCTBX commit	Tue, 15 Aug 2023 16:29:33 -0400	466 lines
[git/cctbx_project] master: Change so auto-sharpening takes place down to 10A resolution before local averaging, as this improved some test cases. (7cab3c8dd2)	CCTBX commit	Tue, 15 Aug 2023 14:37:31 +0100	97 lines
[git/dxtbx] main: Fix undefined behaviour from unthrown error (#656) (730b8d56)	DXTBX commit	Tue, 15 Aug 2023 11:16:48 +0000	126 lines
[git/cctbx_project] master: Tighten sigmaSphericityBeta to avoid unreasonable levels of anisotropy. New value is generally better in the published set of em_placement tests. (ba3f863266)	CCTBX commit	Tue, 15 Aug 2023 09:47:32 +0100	425 lines
[git/cctbx_project] master: bug fix: use correct values for s/k (41ed81d2fa)	CCTBX commit	Mon, 14 Aug 2023 14:30:03 -0700	669 lines
[git/dxtbx] main: dxtbx 3.16.0 (80787415)	DXTBX commit	Mon, 14 Aug 2023 22:20:21 +0100	100 lines
[git/dxtbx] main: NXmx general writer (#615) (0554ef39)	DXTBX commit	Mon, 14 Aug 2023 19:26:01 +0100	2833 lines
[git/dxtbx] main: dxtbx 3.16.0 Changelog (f464b576)	DXTBX commit	Mon, 14 Aug 2023 10:25:02 +0100	434 lines
[git/dxtbx] main: Bump version: 3.16.dev → 3.17.dev (df3e0b69)	DXTBX commit	Mon, 14 Aug 2023 10:25:02 +0100	111 lines
[git/dxtbx] tag 'v3.16.0' created	DXTBX commit	Mon, 14 Aug 2023 10:25:02 +0100	40 lines
[git/cctbx_project] master: mmtbx: update probe and reduce paths for kinemage (bc10f9ba78)	CCTBX commit	Mon, 14 Aug 2023 01:15:14 -0700	150 lines
[git/dxtbx] main: Clean Clutter (eda7169c)	DXTBX commit	Sun, 13 Aug 2023 05:11:09 +0100	92 lines
[git/cctbx_project] master: neutralize scatterers: add tests (e211b058eb)	CCTBX commit	Fri, 11 Aug 2023 23:05:05 -0700	351 lines
[git/cctbx_project] master: remove debugging leftover (4711409e9d)	CCTBX commit	Fri, 11 Aug 2023 16:26:12 -0700	128 lines
[git/cctbx_project] master: Fix log in cif_as_mtz, make biomt exp optional, .. (172ad4dcfa)	CCTBX commit	Fri, 11 Aug 2023 16:04:48 -0700	278 lines
[git/cctbx_project] master: Allow to control dot size (db060e0edb)	CCTBX commit	Fri, 11 Aug 2023 15:59:54 -0700	208 lines
[git/cctbx_project] master: neutralize scatterers: propagate into hierarchy and pdb_inp (8820ceab16)	CCTBX commit	Fri, 11 Aug 2023 15:06:59 -0700	120 lines
[git/cctbx_project] master: switch to using model.set_log, bug fix for rna_validate_suites (5dd268b9b1)	CCTBX commit	Fri, 11 Aug 2023 16:32:55 -0400	309 lines
[git/cctbx_project] master: Make code more forgiving of poor maps, e.g. subtomograms. (ca712cc05c)	CCTBX commit	Fri, 11 Aug 2023 15:36:11 +0100	122 lines
[git/dxtbx] main: Update CI prebuilt version of CCTBX (#655) (5e079c79)	DXTBX commit	Fri, 11 Aug 2023 12:14:14 +0000	101 lines
[git/dxtbx] main: NXmx: handle multidimensional arrays (#612) (3bc6e673)	DXTBX commit	Fri, 11 Aug 2023 09:05:16 +0000	545 lines
[git/cctbx_project] master: neutralize_scatterers: discard registry (4720493e56)	CCTBX commit	Thu, 10 Aug 2023 22:58:35 -0700	89 lines
[git/cctbx_project] master: Catch very small cell (b27e499b42)	CCTBX commit	Thu, 10 Aug 2023 16:19:44 -0600	123 lines
[git/cctbx_project] master: major reorg and tidyup of QMR (79fa31a5e0)	CCTBX commit	Thu, 10 Aug 2023 14:11:33 -0700	1396 lines
[git/cctbx_project] master: Fix typo (a773303f0a)	CCTBX commit	Thu, 10 Aug 2023 11:32:30 -0700	92 lines
[git/dxtbx] main: FormatCBFMiniEigerChessID7B2 (#649) (206c7cb2)	DXTBX commit	Thu, 10 Aug 2023 15:33:10 +0000	159 lines
[git/dxtbx] main: ESRF ID23-2 support (#651) (39c49235)	DXTBX commit	Thu, 10 Aug 2023 15:32:35 +0000	170 lines
[git/cctbx_project] master: CCTBXParser: fix file processing bug (f9db707d6f)	CCTBX commit	Wed, 9 Aug 2023 23:03:11 -0700	276 lines
[git/cctbx_project] master: hydrogenate: dont call model.select if not required (f17d6dd421)	CCTBX commit	Wed, 9 Aug 2023 22:52:23 -0700	121 lines
[git/cctbx_project] master: fix typo (a90bf17994)	CCTBX commit	Wed, 9 Aug 2023 15:41:03 -0600	92 lines
[git/cctbx_project] master: update link (ffd60fe7e9)	CCTBX commit	Wed, 9 Aug 2023 13:46:07 -0700	98 lines
[git/cctbx_project] master: Fix typos, use HETATM for AU and HOH instead of ATOM, use rcsb links (e160d1e325)	CCTBX commit	Wed, 9 Aug 2023 12:25:08 -0600	381 lines
[git/cctbx_project] master: CCTBXParser: consolidate duplicate paths when parsing files (93de07eedb)	CCTBX commit	Wed, 9 Aug 2023 11:06:42 -0700	147 lines
[git/cctbx_project] master: cctbx: ensure order in test values (c6c2b31633)	CCTBX commit	Wed, 9 Aug 2023 09:23:40 -0700	94 lines
[git/cctbx_project] master: Modernize test: use map_model_manager instead of lower-level objects (4bff6dd34b)	CCTBX commit	Tue, 8 Aug 2023 16:33:28 -0700	839 lines
[git/cctbx_project] master: proper case for elements (906447b7b8)	CCTBX commit	Tue, 8 Aug 2023 16:15:32 -0700	93 lines
[git/cctbx_project] master: Add discussion of PDB hierarchy and PDB and mmCIF files (7ddf723b2b)	CCTBX commit	Tue, 8 Aug 2023 15:41:14 -0600	460 lines
[git/cctbx_project] master: get_h_from_cc works with more files (a4476f32e5)	CCTBX commit	Tue, 8 Aug 2023 12:07:53 -0700	306 lines
[git/cctbx_project] master: Summary of the problem: The Phenix mmcif writer splits chains at end of protein/nucleic acid polymers, between ligands, and at the end of blocks of waters, creating new label_asym_id values to indicate these locations as chain breaks, but keeping the same auth_asym_id (chain_id) values. In particular, if a hierarchy has multiple protein or nucleic acid chains with the same chain_id value, the mmcif text will have different label_asym_id values but the same auth_asym_id for each of these chains. On reading an mmcif file, the builder begins a new chain when the auth_asym_id (chain_id) changes (or a new model is found). It ignores the label_asym_id values ( unless there is no auth_asym_id). This means that the information about chain breaks is lost, and all contiguous chains with the same chain_id are now contained in a single chain. Solution: Minor changes to mmcif builder to start a new chain when the label_asym_id changes and the auth_asym_id (chain_id) remains the same. Applies only when the previous residue was protein or nucleic acid. Main fix: mmcif.py (start new chain when label_asym_id changes; method to identify whether previous residue was either protein or nucleic acid, consistent with method used to do the same thing in mmcif writer in hierarchy.py). Fixes to tests: These are all simple additions of TER records at the end of protein/ nucleic acid chains in PDB format files. This is the standard for PDB files. Additionally, mmcif input files are modified to fix label_asym_id for ligands (changes each ligand), compatible with mmcif standard. (003f38ba5f)	CCTBX commit	Tue, 8 Aug 2023 11:48:52 -0700	505 lines
[git/cctbx_project] master: iotbx: mark test to expected failure (a4c5026691)	CCTBX commit	Tue, 8 Aug 2023 06:22:24 -0700	105 lines
[git/dxtbx] main: Fix bit depth for Eiger / NXmx for i19-2 (#652) (d516f204)	DXTBX commit	Tue, 8 Aug 2023 14:09:39 +0100	149 lines
[git/cctbx_project] master: Add test for conversion between mmcif and hierarchy for case where there are multiple chains with same chain_id. Currently fails (f435c9c252)	CCTBX commit	Mon, 7 Aug 2023 12:44:47 -0700	91 lines
[git/cctbx_project] master: Add regression test for mmcif to and from hierarchy (8495a3ac59)	CCTBX commit	Mon, 7 Aug 2023 12:41:47 -0700	634 lines
[git/cctbx_project] master: Fix setting of shift_cart for ncs_object upon change of unit_cell_crystal_symmetry in map_manager (480272d6ca)	CCTBX commit	Mon, 7 Aug 2023 12:54:32 -0600	345 lines
[git/cctbx_project] master: When slicing refls for hopper into 1 file/expt, reset_ids to 0 in refl (8d8b34bd8c)	CCTBX commit	Fri, 4 Aug 2023 19:24:51 -0700	93 lines
[git/cctbx_project] master: Add generate_map for map-model fsc (6ff80be817)	CCTBX commit	Fri, 4 Aug 2023 19:59:15 -0600	127 lines
[git/cctbx_project] master: Default to model_based if no info (5ba1b71f5f)	CCTBX commit	Fri, 4 Aug 2023 13:07:48 -0600	119 lines
[git/cctbx_project] master: libtbx: add context manager for timing code blocks (3f30bcb18a)	CCTBX commit	Fri, 4 Aug 2023 11:19:30 -0700	117 lines
[git/dxtbx] main: Add probe type to the Beam model (#647) (4783b2c7)	DXTBX commit	Fri, 4 Aug 2023 16:48:36 +0100	1771 lines
[git/cctbx_project] master: fix typo (b5a81e9c21)	CCTBX commit	Fri, 4 Aug 2023 05:52:35 -0700	91 lines
[git/cctbx_project] master: major change to QMR PHIL options (0667ab8d28)	CCTBX commit	Thu, 3 Aug 2023 13:46:57 -0700	1147 lines
[git/cctbx_project] master: Move get_selection_string_from_model to cctbx and write out selection strings for process_predicted_model (e6101ddc4d)	CCTBX commit	Thu, 3 Aug 2023 10:37:49 -0600	333 lines
[git/dxtbx] main: FormatROD - Multi-axis goniometer, faster decompression (#653) (5c27616f)	DXTBX commit	Thu, 3 Aug 2023 17:01:39 +0100	1334 lines
[git/dxtbx] main: Merge pull request #653 from dials/FormatROD-multiaxis (e91a6f53)	DXTBX commit	Thu, 3 Aug 2023 16:53:20 +0100	88 lines
[git/dxtbx] main: Merge branch 'main' into FormatROD-multiaxis (1995c94f)	DXTBX commit	Thu, 3 Aug 2023 09:42:56 +0100	76 lines
[git/cctbx_project] master: iotbx: clean clutter (3129f5d371)	CCTBX commit	Wed, 2 Aug 2023 16:49:08 -0700	65 lines
[git/cctbx_project] master: Remove segid_as_auth_segid from pdb_as_cif (f5c5a1b603)	CCTBX commit	Wed, 2 Aug 2023 14:56:30 -0600	136 lines
[git/cctbx_project] master: Return hierarchy info as group_args in pdb_or_mmcif_string_as_hierarchy (961d9775b4)	CCTBX commit	Wed, 2 Aug 2023 12:45:21 -0700	295 lines
[git/cctbx_project] master: Update web site for translation of ATOM records (7fca339121)	CCTBX commit	Wed, 2 Aug 2023 08:41:34 -0700	92 lines
[git/dxtbx] main: FormatROD: clarified function names (5cb88a9c)	DXTBX commit	Wed, 2 Aug 2023 22:18:32 +0900	378 lines
[git/dxtbx] main: Add polychromatic beam (#621) (ef5f9aba)	DXTBX commit	Wed, 2 Aug 2023 14:15:44 +0100	2141 lines
[git/cctbx_project] master: Fix typo (454345edd3)	CCTBX commit	Wed, 2 Aug 2023 05:57:57 -0700	93 lines
[git/dxtbx] main: FormatROD: fix variable names in a comment to match the code (604ea58a)	DXTBX commit	Wed, 2 Aug 2023 18:18:55 +0900	97 lines
[git/dxtbx] main: Merge branch 'FormatROD-multiaxis' of github.com:dials/dxtbx into FormatROD-multiaxis (00bc2999)	DXTBX commit	Wed, 2 Aug 2023 18:07:13 +0900	67 lines
[git/dxtbx] main: FormatROD: added comments about two's complement representation (094fc7b7)	DXTBX commit	Wed, 2 Aug 2023 18:05:19 +0900	152 lines
[git/dxtbx] main: Rename newsfragments/xxx.feature to newsfragments/653.feature (af1f9ecd)	DXTBX commit	Wed, 2 Aug 2023 09:04:12 +0000	94 lines
[git/dxtbx] main: News (c73abba0)	DXTBX commit	Wed, 2 Aug 2023 10:01:43 +0100	76 lines
[git/cctbx_project] master: Add support for segid in PDB<==>mmCIF (f4895de5cf)	CCTBX commit	Tue, 1 Aug 2023 15:50:54 -0700	619 lines
[git/cctbx_project] master: Molprobity2 debug9 (#913) (949d3726cb)	CCTBX commit	Tue, 1 Aug 2023 15:05:14 -0400	1942 lines
[git/cctbx_project] master: Refactor `small_cell_index_detail` (#912) (ee1a261f33)	CCTBX commit	Tue, 1 Aug 2023 10:36:01 -0700	3259 lines
[git/cctbx_project] master: added mp_validate_bonds (9e107d3e31)	CCTBX commit	Mon, 31 Jul 2023 19:52:02 -0400	2012 lines
[git/cctbx_project] master: added json output to cablam (17c816e0bd)	CCTBX commit	Mon, 31 Jul 2023 19:52:02 -0400	2629 lines
[git/cctbx_project] master: adding chiral_validation program and json output (e4d5d04844)	CCTBX commit	Mon, 31 Jul 2023 19:52:02 -0400	2003 lines
[git/cctbx_project] master: added merge dict function to avoid usage of unpacking operator (bb7d1f4211)	CCTBX commit	Mon, 31 Jul 2023 19:52:02 -0400	280 lines
[git/cctbx_project] master: updated rna_validate to use new suitealyze, updated test code (6acc932131)	CCTBX commit	Mon, 31 Jul 2023 19:52:02 -0400	911 lines
[git/cctbx_project] master: small change to reuse some clashscore code in undowser (8ccb3e5132)	CCTBX commit	Mon, 31 Jul 2023 19:52:02 -0400	129 lines
[git/cctbx_project] master: initial add of json output to suitename (fa59277f81)	CCTBX commit	Mon, 31 Jul 2023 19:52:02 -0400	1860 lines
[git/cctbx_project] master: adding json to cbetadev (53e1010480)	CCTBX commit	Mon, 31 Jul 2023 19:52:02 -0400	539 lines
[git/cctbx_project] master: initial undowser commit (b7b60c45ce)	CCTBX commit	Mon, 31 Jul 2023 19:52:02 -0400	89 lines
[git/cctbx_project] master: temp switch rna_validate to use old suitename (eb0794e240)	CCTBX commit	Mon, 31 Jul 2023 19:52:02 -0400	96 lines
[git/cctbx_project] master: added rna_suitelyze program (1e687a6462)	CCTBX commit	Mon, 31 Jul 2023 19:52:01 -0400	308 lines
[git/cctbx_project] master: new cctbx-like interface for suitename validation (17531b070d)	CCTBX commit	Mon, 31 Jul 2023 19:52:01 -0400	1348 lines
[git/cctbx_project] master: adding json output to rotalyze (3def84118a)	CCTBX commit	Mon, 31 Jul 2023 19:52:01 -0400	672 lines
[git/cctbx_project] master: updated ramalyze json to output multi-model summary (d318eefd8f)	CCTBX commit	Mon, 31 Jul 2023 19:52:01 -0400	456 lines
[git/cctbx_project] master: rename suitename program and update commandline to match (4e3fcdb30b)	CCTBX commit	Mon, 31 Jul 2023 19:52:01 -0400	1189 lines
[git/cctbx_project] master: rename suitename commandline (0583e89bb9)	CCTBX commit	Mon, 31 Jul 2023 19:52:01 -0400	131 lines
[git/cctbx_project] master: updated summary results for json output for clashscore and rotalyze (d6ebf8ecf8)	CCTBX commit	Mon, 31 Jul 2023 19:52:01 -0400	521 lines
[git/cctbx_project] master: add rna_puckerlyze program (34c618637a)	CCTBX commit	Mon, 31 Jul 2023 19:52:01 -0400	299 lines
[git/cctbx_project] master: added json output to ramalyze (170c93b88b)	CCTBX commit	Mon, 31 Jul 2023 19:52:01 -0400	678 lines
[git/cctbx_project] master: phenix.suitename now invokes the new suitealyze interface (487feb5f2b)	CCTBX commit	Mon, 31 Jul 2023 19:52:01 -0400	549 lines
[git/cctbx_project] master: convert rna_validate to use program template (7180c45301)	CCTBX commit	Mon, 31 Jul 2023 19:52:01 -0400	429 lines
[git/cctbx_project] master: allow nonstandard RNA bases in linked residues (15485ffad3)	CCTBX commit	Mon, 31 Jul 2023 19:52:01 -0400	97 lines
[git/cctbx_project] master: omegalyze json output updated to deal with models, updates to test code (deaf4321cf)	CCTBX commit	Mon, 31 Jul 2023 19:52:01 -0400	491 lines
[git/cctbx_project] master: added json output to rna_validate (d09a37e5cb)	CCTBX commit	Mon, 31 Jul 2023 19:52:01 -0400	1540 lines
[git/cctbx_project] master: rename puckerlyze and suitelyze to rna_validate_puckers and rna_validate_suites (dfda3d8270)	CCTBX commit	Mon, 31 Jul 2023 19:52:01 -0400	1018 lines
[git/cctbx_project] master: omegalyze json added (7551594e90)	CCTBX commit	Mon, 31 Jul 2023 19:52:01 -0400	801 lines
[git/cctbx_project] master: adding rna_validate_bonds program and command_line (155d0d4ef3)	CCTBX commit	Mon, 31 Jul 2023 19:52:01 -0400	335 lines
[git/cctbx_project] master: usage text was printed regardless of need (27dedcb6ce)	CCTBX commit	Mon, 31 Jul 2023 19:52:01 -0400	89 lines
[git/cctbx_project] master: adding json to clashscore (84a77ebf0a)	CCTBX commit	Mon, 31 Jul 2023 19:52:01 -0400	936 lines
[git/dxtbx] main: FormatROD: Ported the decompression routine to C++ (50x faster!) (89fc12d6)	DXTBX commit	Mon, 31 Jul 2023 16:10:02 +0900	672 lines
[git/dxtbx] main: FormatROD: Use a multiaxis goniometer model to allow simultaneous indexing of multiple scans (4ab3a8f2)	DXTBX commit	Fri, 28 Jul 2023 21:05:12 +0900	629 lines
[git/dxtbx] main: FormatROD: sorted out coordinate system, removing adhoc negations (TODO: validate the handedness by anomalous signals) (08a49c1a)	DXTBX commit	Fri, 28 Jul 2023 16:41:30 +0900	495 lines

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