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July 2022

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Subject	From	Date	Size
[git/cctbx_project] master: halfway fixing domains_from_pae (977c104df2)	CCTBX commit	Sun, 31 Jul 2022 12:37:35 -0700	214 lines
[git/cctbx_project] master: Workaround for bug in fontspin control when resizing GUI when changing font size by implementing QDoubleSpinBox.mouseReleaseEvent() as a signal rather than using buggy valueChanged(). Bug fix for scaling radii properly according to data values (ea5961437a)	CCTBX commit	Sat, 30 Jul 2022 16:07:45 +0100	692 lines
[git/cctbx_project] master: lowered hard-coded unit cell limit from 70 A^3 to 40 A^3 (b906a8c626)	CCTBX commit	Fri, 29 Jul 2022 10:14:41 -0700	143 lines
[git/cctbx_project] master: Fix aniso diffuse calculation in diffBragg (#773) (d1a605fcf2)	CCTBX commit	Fri, 29 Jul 2022 09:51:00 -0600	562 lines
[git/cctbx_project] master: adding CCL entity type (b3a87db39b)	CCTBX commit	Tue, 26 Jul 2022 06:45:55 -0700	93 lines
[git/cctbx_project] master: XFEL GUI: fix trial selection bug (b601c28698)	CCTBX commit	Tue, 26 Jul 2022 00:21:09 -0700	105 lines
[git/cctbx_project] master: conda: update pyside2 and numpy selectors (c182cb70bb)	CCTBX commit	Sun, 24 Jul 2022 06:53:42 -0700	111 lines
[git/cctbx_project] master: iotbx: add fmodel PHIL to DataManager (b23e45a851)	CCTBX commit	Fri, 22 Jul 2022 09:33:24 -0700	328 lines
[git/cctbx_project] master: Stabilize the test. (1cfdc21a49)	CCTBX commit	Thu, 21 Jul 2022 15:31:14 -0700	147 lines
[git/cctbx_project] master: Clean clutter (9ea1eb96cc)	CCTBX commit	Thu, 21 Jul 2022 12:13:52 -0700	105 lines
[git/cctbx_project] master: Moved from phenix_regression/real_space_refine/tst_52, streamlined. Marked as expected failure. (e39e4b523a)	CCTBX commit	Thu, 21 Jul 2022 12:01:50 -0700	1188 lines
[git/cctbx_project] master: New ability to associate nanoBragg sources with (ccbb3de796)	CCTBX commit	Thu, 21 Jul 2022 10:24:21 -0700	453 lines
[git/cctbx_project] master: Return fmodel (30b5d43302)	CCTBX commit	Thu, 21 Jul 2022 09:19:12 -0600	82 lines
[git/cctbx_project] master: Update pbs submission settings in XFEL GUI (7156a6bd01)	CCTBX commit	Thu, 21 Jul 2022 02:38:12 +0900	164 lines
[git/cctbx_project] master: Allow fixed_offset for renumber_residues (36130787e3)	CCTBX commit	Wed, 20 Jul 2022 10:59:57 -0600	127 lines
[git/cctbx_project] master: python2 ok (5af736b575)	CCTBX commit	Wed, 20 Jul 2022 08:08:30 -0700	103 lines
[git/cctbx_project] master: changing some QI defaults (01c987316a)	CCTBX commit	Wed, 20 Jul 2022 08:08:30 -0700	121 lines
[git/cctbx_project] master: Allow remove_unknowns in get_sequences (2a60a1b1f1)	CCTBX commit	Wed, 20 Jul 2022 05:29:38 -0700	122 lines
[git/cctbx_project] master: Allow undo_shift_cart (03382cbc3b)	CCTBX commit	Tue, 19 Jul 2022 14:05:29 -0700	155 lines
[git/cctbx_project] master: moved display2.py to crys3d/hklviewer/ (12029105c9)	CCTBX commit	Tue, 19 Jul 2022 18:17:11 +0100	83 lines
[git/cctbx_project] master: Bug fix: use correct way of checking reflections are only expanded in browser (68ac47c49b)	CCTBX commit	Tue, 19 Jul 2022 14:49:32 +0100	137 lines
[git/dxtbx] main: Fix mask_untrusted_circle when circle extends outside detector (#525) (660efc58)	DXTBX commit	Mon, 18 Jul 2022 14:52:16 +0000	105 lines
[git/dxtbx] main: Be more forgiving of missing values (#534) (7ea8628b)	DXTBX commit	Mon, 18 Jul 2022 12:42:05 +0100	125 lines
[git/cctbx_project] master: Bugfix: switch indices to correct order. (070ff4ba59)	CCTBX commit	Fri, 15 Jul 2022 21:57:44 -0700	196 lines
[git/cctbx_project] master: Ignore encoding errors in find_files, change non-ASCII symbols to similar ASCII ones. (6f82e116b8)	CCTBX commit	Fri, 15 Jul 2022 11:53:14 -0700	166 lines
[git/cctbx_project] master: change colour background of WebGL in browser if using more recent version of Qt than 5.12 which is buggy and can't do that (3d93ef4a97)	CCTBX commit	Fri, 15 Jul 2022 18:53:01 +0100	226 lines
[git/cctbx_project] master: Clutter (33e693b445)	CCTBX commit	Fri, 15 Jul 2022 08:48:25 -0700	61 lines
[git/dxtbx] main: Fix CMake build when HDF5 is not in system path (#533) (9339a9e1)	DXTBX commit	Fri, 15 Jul 2022 13:18:49 +0000	116 lines
[git/cctbx_project] master: web services changes (5d76aac190)	CCTBX commit	Thu, 14 Jul 2022 17:10:08 -0700	95 lines
[git/cctbx_project] master: Swithc to RCSB API v2 link. Fix the tool and add a test. (0283606900)	CCTBX commit	Thu, 14 Jul 2022 16:44:26 -0700	252 lines
[git/cctbx_project] master: Workaround for changing background colour in QWebEngineView by assigning a QPalette to the QWebEngineView (1c6e4bb154)	CCTBX commit	Fri, 15 Jul 2022 00:12:00 +0100	877 lines
[git/dxtbx] main: Use pytest.approx to fix failing test (#531) (bf6f5810)	DXTBX commit	Thu, 14 Jul 2022 22:59:32 +0100	108 lines
[git/cctbx_project] master: mmtbx: move polygon data test from chem_data (ef957f8238)	CCTBX commit	Thu, 14 Jul 2022 13:26:50 -0700	417 lines
[git/cctbx_project] master: uctbx: define env_etc.ncdist_resource_common_includes only if the ncdist repository exists (ab4c3baa41)	CCTBX commit	Thu, 14 Jul 2022 12:59:50 -0700	142 lines
[git/cctbx_project] master: iotbx: Fix DeprecationWarning (10b18c2fc7)	CCTBX commit	Thu, 14 Jul 2022 12:57:35 -0700	97 lines
[git/cctbx_project] master: update (113617c94d)	CCTBX commit	Wed, 13 Jul 2022 17:58:18 -0700	145 lines
[git/cctbx_project] master: Backend of phenix.map_values_along_line program, with a test (5c83f219c1)	CCTBX commit	Wed, 13 Jul 2022 17:47:14 -0700	244 lines
[git/cctbx_project] master: Removing unused untested and broken tool (7e97dd1f47)	CCTBX commit	Wed, 13 Jul 2022 15:21:35 -0700	159 lines
[git/cctbx_project] master: Py3 compatibility (d03a4dc41e)	CCTBX commit	Wed, 13 Jul 2022 15:18:52 -0700	136 lines
[git/dxtbx] main: NeXus: use median oscillation width (#526) (1cdac202)	DXTBX commit	Wed, 13 Jul 2022 11:57:05 +0000	291 lines
[git/cctbx_project] master: better test and tidy (729978a87d)	CCTBX commit	Tue, 12 Jul 2022 17:05:03 -0700	214 lines
[git/cctbx_project] master: start of cdl_nuc factor (7b60a12acd)	CCTBX commit	Tue, 12 Jul 2022 16:27:46 -0700	138 lines
[git/cctbx_project] master: added NA CDL factor and moved to PHIL scope (3ccfadde0e)	CCTBX commit	Tue, 12 Jul 2022 16:27:46 -0700	297 lines
[git/cctbx_project] master: Update message about PySide2 (b6eccb869d)	CCTBX commit	Tue, 12 Jul 2022 16:20:48 -0700	92 lines
[git/dxtbx] main: DIALS 3.10.1 Changelog (24362c28)	DXTBX commit	Tue, 12 Jul 2022 22:07:45 +0100	140 lines
[git/cctbx_project] master: test moved to py (df79cf6b57)	CCTBX commit	Tue, 12 Jul 2022 12:58:12 -0700	96 lines
[git/cctbx_project] master: mmtbx: unset log in molprobity for pickling (bedf7886e3)	CCTBX commit	Tue, 12 Jul 2022 10:37:07 -0700	95 lines
[git/cctbx_project] master: Fix for corner case for empty result with SS, with test. (4aea1f1178)	CCTBX commit	Mon, 11 Jul 2022 15:56:50 -0700	445 lines
[git/cctbx_project] master: Buffering outputs because cablam mirrors output to stderr which is discouraged in tests. (564cbd8f43)	CCTBX commit	Mon, 11 Jul 2022 15:17:08 -0700	96 lines
[git/cctbx_project] master: fixed test based on user example (88ee6b1781)	CCTBX commit	Mon, 11 Jul 2022 10:50:08 -0700	311 lines
[git/cctbx_project] master: Catch different formats in PDB (3d87465f87)	CCTBX commit	Mon, 11 Jul 2022 09:49:17 -0700	93 lines
[git/cctbx_project] master: Fix apply_duplicate_multiple_chains (0e08643455)	CCTBX commit	Sun, 10 Jul 2022 18:17:19 -0700	212 lines
[git/cctbx_project] master: Alternative mosaicity refinement, block size only. (0359f11c7b)	CCTBX commit	Sun, 10 Jul 2022 16:37:33 -0700	272 lines
[git/cctbx_project] master: Add variable to class, so caller can access it. (b0f227a007)	CCTBX commit	Sun, 10 Jul 2022 16:37:33 -0700	148 lines
[git/cctbx_project] master: Implement info_lock in multiprocessing (e8e699fd78)	CCTBX commit	Sun, 10 Jul 2022 16:59:26 -0600	140 lines
[git/cctbx_project] master: Fix multiple lines (aa305af3c7)	CCTBX commit	Sat, 9 Jul 2022 14:15:11 -0700	94 lines
[git/cctbx_project] master: write multiple copies of sequences marked as multiple in PDB-style fa like >7WZE_1\|Chains A, B (fb9ee9c927)	CCTBX commit	Sat, 9 Jul 2022 13:58:32 -0700	245 lines
[git/cctbx_project] master: passing args down into H terminii (71c482d991)	CCTBX commit	Fri, 8 Jul 2022 14:26:54 -0700	384 lines
[git/cctbx_project] master: Checking if RCSB actually found something (57f91a0ebf)	CCTBX commit	Fri, 8 Jul 2022 14:22:50 -0700	185 lines
[git/cctbx_project] master: Catch None for b_values (62ea3f15a5)	CCTBX commit	Fri, 8 Jul 2022 12:57:14 -0700	91 lines
[git/cctbx_project] master: failing RCSB web services (5a659c53d5)	CCTBX commit	Fri, 8 Jul 2022 11:35:47 -0700	109 lines
[git/cctbx_project] master: Update to use suggested function, thus removing DeprecationWarning. (347ee3ea8a)	CCTBX commit	Fri, 8 Jul 2022 11:10:12 -0700	110 lines
[git/dxtbx] main: Fix ExperimentList N² complexity appending experiments (#528) (37308bcb)	DXTBX commit	Fri, 8 Jul 2022 12:31:28 +0100	433 lines
[git/dxtbx] main: NXmx: support multiple wavelength in incident_beam (#527) (3072dc4e)	DXTBX commit	Fri, 8 Jul 2022 12:15:27 +0100	563 lines
[git/cctbx_project] master: clean clutter (ef4e5bd816)	CCTBX commit	Thu, 7 Jul 2022 11:21:38 -0700	61 lines
[git/cctbx_project] master: Allow call of explode_and_refine.py without map_data_ref (8ec34073aa)	CCTBX commit	Thu, 7 Jul 2022 11:20:02 -0700	94 lines
[git/cctbx_project] master: made SVM options strings from byte (f8e9991151)	CCTBX commit	Thu, 7 Jul 2022 11:15:14 -0700	109 lines
[git/cctbx_project] master: Remove the word error from normal output (669545d141)	CCTBX commit	Thu, 7 Jul 2022 11:00:35 -0700	93 lines
[git/cctbx_project] master: Remove the word error from normal output (00b1c0dd26)	CCTBX commit	Thu, 7 Jul 2022 10:57:48 -0700	473 lines
[git/dxtbx] main: Updated bad pixel mask for DLS I23 PILATUS 12M for 2022 run 3 (#530) (5cda055a)	DXTBX commit	Thu, 7 Jul 2022 14:44:45 +0100	166 lines
[git/cctbx_project] master: Add end of line (81c5171953)	CCTBX commit	Wed, 6 Jul 2022 23:21:48 -0700	61 lines
[git/cctbx_project] master: clean clutter (7eaba2d9e0)	CCTBX commit	Wed, 6 Jul 2022 17:41:17 -0700	61 lines
[git/cctbx_project] master: Do not shift model if no map-manager; temp fixes for GUI in python 3 (38c63b3dcb)	CCTBX commit	Wed, 6 Jul 2022 16:46:16 -0600	146 lines
[git/cctbx_project] master: Fixing warning, moving test to PY and to cctbx (55ecfd7dac)	CCTBX commit	Wed, 6 Jul 2022 15:05:29 -0700	93 lines
[git/cctbx_project] master: Attempt on improving cross-platform stability (18d7e28fd2)	CCTBX commit	Wed, 6 Jul 2022 15:05:29 -0700	92 lines
[git/cctbx_project] master: fixing QI test (b5b10b37ba)	CCTBX commit	Wed, 6 Jul 2022 10:43:38 -0700	169 lines
[git/cctbx_project] master: better clean (09c0e4b605)	CCTBX commit	Wed, 6 Jul 2022 10:00:27 -0700	100 lines
[git/cctbx_project] master: clean clutter (7650d0eed9)	CCTBX commit	Wed, 6 Jul 2022 10:00:27 -0700	116 lines
[git/cctbx_project] master: Should be more compatible with various platforms (b09042a641)	CCTBX commit	Wed, 6 Jul 2022 09:45:52 -0700	133 lines
[git/cctbx_project] master: Molprobity2 debug3 (#768) (8d02c6f8a9)	CCTBX commit	Wed, 6 Jul 2022 08:24:32 -0400	2380 lines
[git/cctbx_project] master: Moving test from phenix, changing 1.26515 to 1.26514 to make work. (f116a8d51b)	CCTBX commit	Tue, 5 Jul 2022 16:51:29 -0700	137 lines
[git/cctbx_project] master: libtbx: do not set GUI environment variables in dispatchers for Python 3 (60f99eec2d)	CCTBX commit	Tue, 5 Jul 2022 16:40:35 -0700	373 lines
[git/cctbx_project] master: add QI helper program and planarity info (c798f51f3f)	CCTBX commit	Tue, 5 Jul 2022 12:31:45 -0700	557 lines
[git/cctbx_project] master: rename Overview tab to Quick View (84a1113f73)	CCTBX commit	Tue, 5 Jul 2022 17:48:52 +0100	252 lines
[git/cctbx_project] master: Clarify effect of maximum_b_value (7dc9db5b33)	CCTBX commit	Tue, 5 Jul 2022 06:37:06 -0600	105 lines
[git/cctbx_project] master: rename maximum_b to maximum_output_b and remove extra parameter (f16847b1c2)	CCTBX commit	Tue, 5 Jul 2022 06:29:49 -0600	241 lines
[git/cctbx_project] master: Allow setting maximum_output_b for process_predicted_model (e7de34cc0a)	CCTBX commit	Tue, 5 Jul 2022 06:21:57 -0600	295 lines
[git/cctbx_project] master: don't override mouse speed and browser font size with defaults when loading a new file (95023b5883)	CCTBX commit	Tue, 5 Jul 2022 12:17:20 +0100	261 lines
[git/cctbx_project] master: Fix sort that could use non-numbers (f0bea6ca8e)	CCTBX commit	Mon, 4 Jul 2022 15:17:27 -0700	98 lines
[git/cctbx_project] master: Update CHANGELOG.rst for 2022.6 release (1c24e1cee0)	CCTBX commit	Mon, 4 Jul 2022 11:01:12 -0700	95 lines
[git/cctbx_project] tag 'v2022.6' created	CCTBX commit	Mon, 4 Jul 2022 11:01:12 -0700	40 lines
[git/cctbx_project] master: This fixes refinement/tst_099.py and refinement/tst_133.py (9bf65f638a)	CCTBX commit	Mon, 4 Jul 2022 10:57:17 -0700	94 lines
[git/cctbx_project] master: more fixes for entering bin values (8d40da4a35)	CCTBX commit	Mon, 4 Jul 2022 18:49:45 +0100	675 lines
[git/cctbx_project] master: Fix random seed at value that makes this test fail (5e0f0d181a)	CCTBX commit	Sun, 3 Jul 2022 11:43:32 -0700	121 lines
[git/cctbx_project] master: Bugfix: refinement selections for sites were not passed into NCS constrained refinement (9d65f35efd)	CCTBX commit	Sun, 3 Jul 2022 10:32:51 -0700	158 lines
[git/cctbx_project] master: More safely temporarily add cs for __setstate__ in model (5dafffaebc)	CCTBX commit	Sun, 3 Jul 2022 07:49:05 -0600	116 lines
[git/cctbx_project] master: Undo setting crystal symmetry in setstate...do this outside (65d2613db9)	CCTBX commit	Sun, 3 Jul 2022 06:20:48 -0600	88 lines
[git/cctbx_project] master: Catch case where a model has not crystal symmetry (2477b5b461)	CCTBX commit	Sun, 3 Jul 2022 06:19:22 -0600	88 lines
[git/cctbx_project] master: Bug fix: allow entering bin values outside upper and lower bounds of the dataset used for binning (c2c208a9b7)	CCTBX commit	Fri, 1 Jul 2022 21:06:21 +0100	128 lines
[git/cctbx_project] master: updates hopper_utils (8f7b859e6d)	CCTBX commit	Fri, 1 Jul 2022 15:31:01 -0400	1011 lines
[git/cctbx_project] master: hopper_utils updates (724aa28f40)	CCTBX commit	Fri, 1 Jul 2022 15:31:01 -0400	195 lines
[git/cctbx_project] master: refinement parameters update (d1ee2406a7)	CCTBX commit	Fri, 1 Jul 2022 15:31:01 -0400	197 lines
[git/cctbx_project] master: hopper updates (dd06b22a75)	CCTBX commit	Fri, 1 Jul 2022 15:31:01 -0400	437 lines
[git/cctbx_project] master: updates ensemble refine launcher (016d3b3fa2)	CCTBX commit	Fri, 1 Jul 2022 15:31:01 -0400	155 lines
[git/cctbx_project] master: updates to parameter errors (fef445d3cf)	CCTBX commit	Fri, 1 Jul 2022 15:31:01 -0400	228 lines
[git/cctbx_project] master: adds a script for getting Fcalc errors (499b8f4d44)	CCTBX commit	Fri, 1 Jul 2022 15:31:01 -0400	512 lines
[git/cctbx_project] master: tests spectrum refinement (f193209a31)	CCTBX commit	Fri, 1 Jul 2022 15:31:01 -0400	364 lines
[git/cctbx_project] master: shows time-per-iteration in geometry refiner (70f970ede1)	CCTBX commit	Fri, 1 Jul 2022 15:31:01 -0400	130 lines
[git/cctbx_project] master: fcalc refiner saves MTZ with errors (5815f03166)	CCTBX commit	Fri, 1 Jul 2022 15:31:01 -0400	459 lines
[git/cctbx_project] master: simtbx.diffBragg.hopper script udpates (7ef3c26c5c)	CCTBX commit	Fri, 1 Jul 2022 15:31:01 -0400	382 lines
[git/cctbx_project] master: adds new phil options (f99506b532)	CCTBX commit	Fri, 1 Jul 2022 15:31:01 -0400	178 lines
[git/cctbx_project] master: updates to phil params (8fd479f93d)	CCTBX commit	Fri, 1 Jul 2022 15:31:01 -0400	193 lines
[git/cctbx_project] master: adds option for per-pixel RMS (e2e8dc3630)	CCTBX commit	Fri, 1 Jul 2022 15:31:01 -0400	797 lines
[git/cctbx_project] master: fcalc refiner (7410e0f3e1)	CCTBX commit	Fri, 1 Jul 2022 15:31:01 -0400	1828 lines
[git/cctbx_project] master: geom refiner udpates (65d1025f17)	CCTBX commit	Fri, 1 Jul 2022 15:31:01 -0400	700 lines
[git/cctbx_project] master: move argparse to top of script (faster -h response) (1c942dbb1f)	CCTBX commit	Fri, 1 Jul 2022 15:31:01 -0400	222 lines
[git/cctbx_project] master: adds option to show pdb summary (e01577fa54)	CCTBX commit	Fri, 1 Jul 2022 15:31:01 -0400	123 lines
[git/cctbx_project] master: catch case where sys.stderr has been modified to be a multi-out object (a923a2b695)	CCTBX commit	Fri, 1 Jul 2022 11:09:38 -0600	97 lines
[git/cctbx_project] master: don't send binning.scene_bin_thresholds and binning.nbins together as they may disagree and mess up specifying explicit thresholds in the bins-table (f9ae01cd70)	CCTBX commit	Fri, 1 Jul 2022 17:51:41 +0100	403 lines

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