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October 2018

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Subject	From	Date	Size
[git/cctbx] master: libtbx: Python 2/3 basestring and new changes (d2fc7d33a)	CCTBX commit	Wed, 31 Oct 2018 16:45:22 -0700	193 lines
[git/cctbx] master: Fix name spelling (1e3aad1e3)	CCTBX commit	Wed, 31 Oct 2018 16:26:16 -0700	86 lines
[git/cctbx] master: Same test but without overwriting Python 2 builtin (945de49e4)	CCTBX commit	Wed, 31 Oct 2018 15:48:25 -0700	108 lines
[git/cctbx] master: Switching from deprecated function (703a916ff)	CCTBX commit	Wed, 31 Oct 2018 13:17:24 -0700	643 lines
[git/cctbx] master: Removing deprecated functionality (0a49d2029)	CCTBX commit	Wed, 31 Oct 2018 12:05:40 -0700	166 lines
[git/cctbx] master: Removing unused functions (813790e9e)	CCTBX commit	Wed, 31 Oct 2018 12:05:40 -0700	212 lines
[git/cctbx] master: libtbx: Python 2/3 cmp change (edf752a0d)	CCTBX commit	Wed, 31 Oct 2018 11:36:34 -0700	135 lines
[git/cctbx] master: added iota_base.py (dd00377f9)	CCTBX commit	Wed, 31 Oct 2018 10:53:42 -0700	918 lines
[git/cctbx] master: Allow understand() to raise exception, and still interpret this as not understood. (b3c4c64aa)	CCTBX commit	Wed, 31 Oct 2018 10:51:01 -0700	120 lines
[git/cctbx] master: Have understand return early if the locator isn't valid. (81a7350e2)	CCTBX commit	Wed, 31 Oct 2018 10:15:30 -0700	83 lines
[git/cctbx] master: generalized job submission and better threading (c5ba8c539)	CCTBX commit	Tue, 30 Oct 2018 18:14:11 -0700	123 lines
[git/cctbx] master: libtbx: Python 2/3 str and round changes (2187b37b3)	CCTBX commit	Tue, 30 Oct 2018 17:24:59 -0700	414 lines
[git/cctbx] master: libtbx: Python 2/3 str changes (4122d0c7f)	CCTBX commit	Tue, 30 Oct 2018 15:24:51 -0700	143 lines
Jenkins 5a cctbx Tests build 7440 Fixed	DLS Jenkins	Tue, 30 Oct 2018 21:02:02 +0000	42 lines
[git/cctbx] master: bug fix: pass original exception message as well (01e172ed4)	CCTBX commit	Tue, 30 Oct 2018 13:56:26 -0700	87 lines
Jenkins 5a cctbx Tests build 7439 Unstable	DLS Jenkins	Tue, 30 Oct 2018 20:23:36 +0000	42 lines
[git/cctbx] master: libtbx: Python 2/3 exception with traceback changes (e4e6a1690)	CCTBX commit	Tue, 30 Oct 2018 13:17:40 -0700	207 lines
[git/cctbx] master: Port polarization code from cxi.merge to new merging application as a separate class. Designed to be called during the modify step. (e99564a96)	CCTBX commit	Tue, 30 Oct 2018 09:13:38 -0700	331 lines
[git/cctbx] master: Add return values and sync function signatures (88c0ee9ea)	CCTBX commit	Tue, 30 Oct 2018 09:12:01 -0700	153 lines
[git/cctbx] master: Bug fix for file loading and add return value (75233aa6a)	CCTBX commit	Tue, 30 Oct 2018 09:11:29 -0700	120 lines
[git/cctbx] master: Add support for installing fast_dp (5c980bd62)	CCTBX commit	Tue, 30 Oct 2018 15:28:26 +0000	178 lines
[git/cctbx] master: Add support for installing fast_dp (3bc34b423)	CCTBX commit	Tue, 30 Oct 2018 15:14:49 +0000	241 lines
[git/cctbx] master: Add support for additional script dispatchers (82845d0e0)	CCTBX commit	Tue, 30 Oct 2018 12:02:37 +0000	128 lines
[git/cctbx] master: libtbx: Python 2/3 unbuffered text change (b7a3ef4b3)	CCTBX commit	Mon, 29 Oct 2018 16:00:27 -0700	90 lines
[git/cctbx] master: Add select/remove experiments based on experiment identifiers (1a1e956cc)	CCTBX commit	Mon, 29 Oct 2018 21:00:36 +0000	253 lines
[git/cctbx] master: ias bugfix (ba9d10f87)	CCTBX commit	Mon, 29 Oct 2018 11:32:33 -0700	84 lines
[git/cctbx] master: Bug fix. (4cee9dc61)	CCTBX commit	Sat, 27 Oct 2018 14:59:00 -0700	187 lines
[git/cctbx] master: cspad_cbf_metrology can refine selected panels in expanding mode (7f42f9f27)	CCTBX commit	Fri, 26 Oct 2018 17:19:17 -0700	227 lines
[git/cctbx] master: Installer: bug fix for CCTBX installer (5b1f4ab59)	CCTBX commit	Fri, 26 Oct 2018 14:55:03 -0700	143 lines
[git/cctbx] master: Write saturation in the as_file method (9e9856bc7)	CCTBX commit	Fri, 26 Oct 2018 14:51:55 -0700	89 lines
[git/cctbx] master: libtbx: Python 2/3 Queue changes (7acd05ab6)	CCTBX commit	Fri, 26 Oct 2018 09:18:59 -0700	605 lines
[git/cctbx] master: ensure that batch_offset gets copied when slicing a scan (5a7a836f5)	CCTBX commit	Fri, 26 Oct 2018 13:35:50 +0100	164 lines
Jenkins CCTBX Branch Tests branch origin/python_code_parsing Failure	DLS Jenkins	Fri, 26 Oct 2018 09:28:41 +0100	156 lines
[git/cctbx] master: Add flags to libtbx.py_compile_all to show output (9c0c21826)	CCTBX commit	Thu, 25 Oct 2018 16:01:42 -0700	174 lines
[git/cctbx] master: libtbx: Python 2/3 __future__ changes (6a939d514)	CCTBX commit	Thu, 25 Oct 2018 12:00:44 -0700	823 lines
[git/cctbx] master: bugfix (c50eceba5)	CCTBX commit	Wed, 24 Oct 2018 15:33:38 -0700	88 lines
[git/cctbx] master: Add help strings for the cctbx.xfel dispatchers and clarify the naming (e21b8a3e8)	CCTBX commit	Wed, 24 Oct 2018 15:25:34 -0700	212 lines
[git/cctbx] master: Add small cell as an option in the XFEL gui. (bf10cbad0)	CCTBX commit	Wed, 24 Oct 2018 14:45:43 -0700	439 lines
[git/cctbx] master: missing module bugfix (e53ac339d)	CCTBX commit	Wed, 24 Oct 2018 12:32:53 -0700	499 lines
[git/cctbx] master: Move small cell stuff to its own command line folder (1d555b778)	CCTBX commit	Wed, 24 Oct 2018 11:34:41 -0700	1354 lines
[git/cctbx] master: Bugfixes (90e9e9dc2)	CCTBX commit	Wed, 24 Oct 2018 10:52:47 -0700	138 lines
Jenkins 5b cctbx MacOS build 3139 Fixed	DLS Jenkins	Wed, 24 Oct 2018 16:15:01 +0100	42 lines
Jenkins 5a cctbx Tests build 7411 Fixed	DLS Jenkins	Wed, 24 Oct 2018 15:21:04 +0100	41 lines
[git/cctbx] master: Remove profile model for test (see #246) (be947ffe1)	CCTBX commit	Wed, 24 Oct 2018 07:14:40 -0700	116 lines
[git/cctbx] master: Fix badly introduced __future__ in show_env.py (8e99df35f)	CCTBX commit	Wed, 24 Oct 2018 11:59:45 +0100	108 lines
Jenkins 5a cctbx Tests build 7408 Unstable	DLS Jenkins	Wed, 24 Oct 2018 05:08:35 +0100	50 lines
Jenkins 5b cctbx MacOS build 3138 Unstable	DLS Jenkins	Wed, 24 Oct 2018 02:01:35 +0100	55 lines
Jenkins 5a cctbx Tests build 7406 Fixed	DLS Jenkins	Wed, 24 Oct 2018 00:36:55 +0100	42 lines
[git/cctbx] master: libtbx: Python 2/3 cmp changes (b0620f8f0)	CCTBX commit	Tue, 23 Oct 2018 16:18:28 -0700	228 lines
[git/cctbx] master: Apparent bugfix for cbflib_adaptbx run_tests (b8f0390c4)	CCTBX commit	Tue, 23 Oct 2018 16:15:53 -0700	88 lines
Jenkins 5a cctbx Tests build 7405 Unstable	DLS Jenkins	Tue, 23 Oct 2018 23:47:23 +0100	51 lines
[git/cctbx] master: Test for equivalance between nanoBragg, dxtbx and cctbx crystal orientations (b689c3135)	CCTBX commit	Tue, 23 Oct 2018 15:41:08 -0700	726 lines
[git/cctbx] master: libtbx: Python 2/3 cmp change for citations.py (3cddce342)	CCTBX commit	Tue, 23 Oct 2018 15:14:24 -0700	187 lines
[git/cctbx] master: Multi-panel support for small cell (e94f9c823)	CCTBX commit	Tue, 23 Oct 2018 14:49:17 -0700	978 lines
[git/cctbx] master: ramalyze: centralize function for getting contours for Ramachandran plots (39c03508c)	CCTBX commit	Tue, 23 Oct 2018 13:21:38 -0700	230 lines
[git/cctbx] master: LV: Some more ADP output. (9179f910d)	CCTBX commit	Tue, 23 Oct 2018 13:21:30 -0700	137 lines
[git/cctbx] master: libtbx: Python 2/3 changes for python_code_parsing (a7a7cbd1c)	CCTBX commit	Tue, 23 Oct 2018 13:18:28 -0700	400 lines
[git/cctbx] master: Clean clutter. (a149f0acc)	CCTBX commit	Tue, 23 Oct 2018 12:12:02 -0700	109 lines
[git/cctbx] master: Fixed calculation of the U matrix (63bff6ec4)	CCTBX commit	Tue, 23 Oct 2018 12:08:29 -0700	221 lines
[git/cctbx] master: Ligand validation: ADPs. (0b6bb4eb5)	CCTBX commit	Tue, 23 Oct 2018 11:55:34 -0700	398 lines
[git/cctbx] master: libtbx: Python 2/3 accidentally reverted some cStringIO changes (5874df159)	CCTBX commit	Tue, 23 Oct 2018 11:41:59 -0700	120 lines
[git/cctbx] master: Workaround to ensure VC redistributables are installed before anything else. (a3d5cd087)	CCTBX commit	Tue, 23 Oct 2018 19:36:15 +0100	183 lines
[git/cctbx] master: In small cell, instead of failing on left-handed basis systems, invert them properly. (e2f898a54)	CCTBX commit	Tue, 23 Oct 2018 11:09:09 -0700	228 lines
[git/cctbx] master: Activate test. (bce5d1b34)	CCTBX commit	Tue, 23 Oct 2018 10:54:16 -0700	81 lines
[git/cctbx] master: Ligand validation: Add test. (415e45438)	CCTBX commit	Tue, 23 Oct 2018 10:10:40 -0700	1009 lines
[git/cctbx] master: Still debugging installation issues (1d0819554)	CCTBX commit	Tue, 23 Oct 2018 08:39:35 +0100	86 lines
[git/cctbx] master: Still debugging installation issues (6fc04304f)	CCTBX commit	Tue, 23 Oct 2018 08:15:23 +0100	140 lines
Jenkins 5a cctbx Tests build 7390 Fixed	DLS Jenkins	Tue, 23 Oct 2018 08:08:04 +0100	41 lines
[git/cctbx] master: fix typo (7d59c35a5)	CCTBX commit	Tue, 23 Oct 2018 08:02:10 +0100	81 lines
[git/cctbx] master: 2to3 compatibility, cctbx.xfel, StringIO (aaa6089c7)	CCTBX commit	Mon, 22 Oct 2018 21:08:38 -0700	1201 lines
[git/cctbx] master: 2to3 compatibility, cctbx.xfel, cPickle (bac790fb5)	CCTBX commit	Mon, 22 Oct 2018 20:12:29 -0700	1292 lines
[git/cctbx] master: 2to3 compatibility, cctbx.xfel, import (d0bf0f468)	CCTBX commit	Mon, 22 Oct 2018 19:33:15 -0700	298 lines
Jenkins 5a cctbx Tests build 7386 Fixed	DLS Jenkins	Tue, 23 Oct 2018 02:04:12 +0100	41 lines
[git/cctbx] master: bug fix: deleted some extra letters (e753512bf)	CCTBX commit	Mon, 22 Oct 2018 17:41:39 -0700	77 lines
[git/cctbx] master: Drop the obsolete image viewer code out of small cell (ba6288447)	CCTBX commit	Mon, 22 Oct 2018 16:59:16 -0700	808 lines
[git/cctbx] master: Tidy small cell, removing unused minimizers and commented out code. (a8070f02f)	CCTBX commit	Mon, 22 Oct 2018 16:59:16 -0700	1120 lines
Jenkins 5a cctbx Tests build 7384 Unstable	DLS Jenkins	Tue, 23 Oct 2018 00:33:28 +0100	35 lines
[git/cctbx] master: libtbx: Python 2/3 cPickle changes (3b85a67b9)	CCTBX commit	Mon, 22 Oct 2018 16:13:31 -0700	701 lines
[git/cctbx] master: Ligand validation: occpupancies. (afa247e13)	CCTBX commit	Mon, 22 Oct 2018 16:02:09 -0700	599 lines
[git/cctbx] master: Add detz_offset to FormatXTCCspad and hook up to GUI (57b7fb7df)	CCTBX commit	Mon, 22 Oct 2018 15:25:09 -0700	211 lines
[git/cctbx] master: libtbx: Python 2/3 StringIO changes (c7b531d7d)	CCTBX commit	Mon, 22 Oct 2018 13:38:59 -0700	960 lines
[git/cctbx] master: Ligand validation: multiple conformations. (a6201869f)	CCTBX commit	Mon, 22 Oct 2018 13:35:02 -0700	547 lines
[git/cctbx] master: Write less output when using cctbx.small_cell_process instead of cctbx.small_cell_index (d511cf5cf)	CCTBX commit	Mon, 22 Oct 2018 12:10:40 -0700	332 lines
[git/cctbx] master: catch case where only CA atoms and no N (266bf9e4c)	CCTBX commit	Mon, 22 Oct 2018 13:01:36 -0600	89 lines
[git/cctbx] master: Proper contours for Ramachandran plot, for Rama8000 database. (635c537e6)	CCTBX commit	Mon, 22 Oct 2018 11:36:57 -0700	129 lines
[git/cctbx] master: Add cctbx.small_cell_process, a program that derives from dials.stills_process but uses the small cell indexer. (0876fc0d4)	CCTBX commit	Mon, 22 Oct 2018 11:29:50 -0700	177 lines
[git/cctbx] master: Refactoring (cf4fd582b)	CCTBX commit	Mon, 22 Oct 2018 11:29:49 -0700	763 lines
[git/cctbx] master: Add missing columns to the reflection table and tweak return values (8aa0ef9b5)	CCTBX commit	Mon, 22 Oct 2018 11:29:49 -0700	318 lines
[git/cctbx] master: Hardcode in some faked mosaic paramters to be refined later (c07a5bbb9)	CCTBX commit	Mon, 22 Oct 2018 11:29:49 -0700	126 lines
[git/cctbx] master: Re-design distributing reflections over HKL chunks. Speed it up using a C++ extension. (9322128db)	CCTBX commit	Mon, 22 Oct 2018 10:26:28 -0700	1781 lines
[git/cctbx] master: Implement a C++ extension for distributing reflections over HKL chunks (33c347916)	CCTBX commit	Mon, 22 Oct 2018 10:26:28 -0700	94 lines
[git/cctbx] master: Implement a C++ extension for distributing reflections over HKL chunks (481f492fb)	CCTBX commit	Mon, 22 Oct 2018 10:26:27 -0700	319 lines
[git/cctbx] master: More debugging output (ec34a1b7e)	CCTBX commit	Mon, 22 Oct 2018 09:14:48 -0700	96 lines
[git/cctbx] master: Add an extra stub function to omptbx (dcaaaed15)	CCTBX commit	Mon, 22 Oct 2018 15:05:00 +0100	103 lines
Jenkins 5b cctbx MacOS build 3123 Fixed	DLS Jenkins	Sun, 21 Oct 2018 11:00:25 +0100	42 lines
[git/cctbx] master: Drop Python <2.6 compatibility code (ec15b877e)	CCTBX commit	Sun, 21 Oct 2018 10:05:57 +0100	313 lines
Jenkins 5b cctbx MacOS build 3122 Failure	DLS Jenkins	Sun, 21 Oct 2018 06:55:15 +0100	233 lines
Jenkins 5a cctbx Tests build 7370 Fixed	DLS Jenkins	Sun, 21 Oct 2018 02:04:15 +0100	42 lines
Jenkins 5a cctbx Tests build 7369 Still Failing	DLS Jenkins	Sat, 20 Oct 2018 01:17:28 +0100	240 lines
Jenkins 5a cctbx Tests build 7368 Still Failing	DLS Jenkins	Sat, 20 Oct 2018 01:11:41 +0100	235 lines
[git/cctbx] master: libtbx: Python 2/3 range changes (ee66bbdc0)	CCTBX commit	Fri, 19 Oct 2018 17:05:08 -0700	2210 lines
[git/cctbx] master: Add run function. (205fe7fae)	CCTBX commit	Fri, 19 Oct 2018 17:00:11 -0700	217 lines
Jenkins 5a cctbx Tests build 7367 Failure	DLS Jenkins	Sat, 20 Oct 2018 00:56:12 +0100	231 lines
[git/cctbx] master: Results class for each ligand. (9df9b3396)	CCTBX commit	Fri, 19 Oct 2018 16:38:08 -0700	441 lines
[git/cctbx] master: Installer: Force use of provided script (9c03b2b39)	CCTBX commit	Fri, 19 Oct 2018 13:20:20 -0700	132 lines
[git/cctbx] master: overlooked the other half of the if clause (410e6f3a5)	CCTBX commit	Fri, 19 Oct 2018 12:10:13 -0700	101 lines
[git/cctbx] master: Officially require a minimum python version of 2.6 (69cca0eae)	CCTBX commit	Fri, 19 Oct 2018 12:10:13 -0700	455 lines
[git/cctbx] master: Validate ligands: add test. (ef19be66f)	CCTBX commit	Fri, 19 Oct 2018 11:40:36 -0700	964 lines
[git/cctbx] master: Add installer hook to do pre-installation checks (032995903)	CCTBX commit	Fri, 19 Oct 2018 09:53:43 +0100	115 lines
Jenkins CCTBX Branch Tests branch origin/either-install-or-runscript Failure	DLS Jenkins	Fri, 19 Oct 2018 09:14:43 +0100	230 lines
[git/cctbx] master: Allow adjustment of mean/sd of output ccp4 map (587007290)	CCTBX commit	Thu, 18 Oct 2018 17:29:08 -0600	212 lines
[git/cctbx] master: libtbx: Python 2/3 dict changes (9fd5d4075)	CCTBX commit	Thu, 18 Oct 2018 14:56:18 -0700	721 lines
[git/cctbx] master: Revert "Freetype for new Ubuntu" (9099b1a55)	CCTBX commit	Thu, 18 Oct 2018 21:38:09 +0100	127 lines
[git/cctbx] master: libtbx: Python 2/3 isinstance, sorted, True changes (8b3eadb40)	CCTBX commit	Thu, 18 Oct 2018 13:25:34 -0700	757 lines
[git/cctbx] master: refactoring to remove redundant code (ddefc9179)	CCTBX commit	Thu, 18 Oct 2018 12:33:01 -0700	2983 lines
[git/cctbx] master: libtbx: Python 2/3 raise exception changes (44548dbfa)	CCTBX commit	Thu, 18 Oct 2018 11:23:48 -0700	2235 lines
[git/cctbx] master: MI: Turned out refine_ncs_operators can destroy the model (b1e5714e7)	CCTBX commit	Thu, 18 Oct 2018 10:42:12 -0700	87 lines
Jenkins 5b cctbx MacOS build 3111 Fixed	DLS Jenkins	Thu, 18 Oct 2018 18:29:26 +0100	42 lines
[git/cctbx] master: Dependency updates (#229) (821ed1549)	CCTBX commit	Thu, 18 Oct 2018 17:19:08 +0100	488 lines
Jenkins 5b cctbx MacOS build 3110 Still Failing	DLS Jenkins	Thu, 18 Oct 2018 15:00:21 +0100	158 lines
[git/cctbx] master: install_base_packages: New option --continue-from (987b85eea)	CCTBX commit	Thu, 18 Oct 2018 14:00:26 +0100	133 lines
[git/cctbx] master: install_base_packages: New option --continue_from (ff3deedb4)	CCTBX commit	Thu, 18 Oct 2018 13:57:15 +0100	133 lines
Jenkins 5a cctbx Tests build 7351 Fixed	DLS Jenkins	Thu, 18 Oct 2018 11:55:30 +0100	43 lines
Jenkins CCTBX Branch Tests branch origin/bootstrap-python Still Failing	DLS Jenkins	Thu, 18 Oct 2018 09:39:02 +0100	159 lines
Jenkins CCTBX Branch Tests branch origin/package-updates Failure	DLS Jenkins	Thu, 18 Oct 2018 09:22:06 +0100	155 lines
Jenkins 5a cctbx Tests build 7350 Still Failing	DLS Jenkins	Thu, 18 Oct 2018 06:22:55 +0100	166 lines
Jenkins 5a cctbx Tests build 7349 Still Failing	DLS Jenkins	Thu, 18 Oct 2018 05:39:45 +0100	162 lines
[git/cctbx] master: libtbx: Python 2/3 catch exception changes (d979bbe95)	CCTBX commit	Wed, 17 Oct 2018 21:38:29 -0700	166 lines
Jenkins 5a cctbx Tests build 7348 Failure	DLS Jenkins	Thu, 18 Oct 2018 02:32:37 +0100	155 lines
[git/cctbx] master: cleaned clutter (697ef1f63)	CCTBX commit	Wed, 17 Oct 2018 18:28:11 -0700	155 lines
Jenkins 5b cctbx MacOS build 3109 Failure	DLS Jenkins	Thu, 18 Oct 2018 00:28:00 +0100	147 lines
[git/cctbx] master: Create new validate_ligands class. (85b038c3a)	CCTBX commit	Wed, 17 Oct 2018 15:49:55 -0700	253 lines
[git/cctbx] master: reduced UI blocking, assorted refactoring (a57570e7c)	CCTBX commit	Wed, 17 Oct 2018 15:16:45 -0700	145 lines
[git/cctbx] master: libtbx: Python 2/3 print_function changes (bb466f729)	CCTBX commit	Wed, 17 Oct 2018 14:34:10 -0700	497 lines
[git/cctbx] master: Bug fixes for small cell (b7ac8e401)	CCTBX commit	Wed, 17 Oct 2018 13:57:55 -0700	178 lines
[git/cctbx] master: Convert mmtbx.validate_ligands to use the program template. (5cf4e51c2)	CCTBX commit	Wed, 17 Oct 2018 12:46:05 -0700	658 lines
[git/cctbx] master: MI:use whole RSR macro-cycle. (f019912a7)	CCTBX commit	Wed, 17 Oct 2018 10:53:28 -0700	320 lines
[git/cctbx] master: dumping the pdb to debug/test reduce when it fails. (ea1cf3511)	CCTBX commit	Wed, 17 Oct 2018 10:53:28 -0700	145 lines
[git/cctbx] master: Avoid stderr output. (b92d83534)	CCTBX commit	Wed, 17 Oct 2018 09:35:48 -0700	156 lines
[git/cctbx] master: More future-proof version of MacOS checks (98fdd87a5)	CCTBX commit	Wed, 17 Oct 2018 08:15:36 +0100	166 lines
[git/cctbx] master: refactor core modules (86619e8b6)	CCTBX commit	Tue, 16 Oct 2018 17:39:53 -0700	128 lines
[git/cctbx] master: PHIL: add function for updating default values (e105b19cb)	CCTBX commit	Tue, 16 Oct 2018 15:28:54 -0700	294 lines
[git/cctbx] master: Bugfix for operator== in imageset (6e71479b2)	CCTBX commit	Mon, 15 Oct 2018 16:17:22 -0700	93 lines
[git/cctbx] master: Polder: restore dispatcher name (8388574a5)	CCTBX commit	Mon, 15 Oct 2018 15:39:53 -0700	74 lines
[git/cctbx] master: Polder: remove unused import (50be0c685)	CCTBX commit	Mon, 15 Oct 2018 15:09:06 -0700	77 lines
[git/cctbx] master: Polder: update for GUI (0b9256277)	CCTBX commit	Mon, 15 Oct 2018 15:04:33 -0700	1507 lines
[git/cctbx] master: DataManager: pass logger argument to reflection_file_server (c2b262175)	CCTBX commit	Mon, 15 Oct 2018 15:01:36 -0700	168 lines
[git/cctbx] master: Rename file (8d758f5fc)	CCTBX commit	Mon, 15 Oct 2018 10:16:54 -0700	1886 lines
[git/cctbx] master: Rename polder class file. (51bd7b5f1)	CCTBX commit	Mon, 15 Oct 2018 10:16:12 -0700	296 lines
[git/cctbx] master: Cleanup. (9560057e7)	CCTBX commit	Mon, 15 Oct 2018 10:01:17 -0700	115 lines
[git/cctbx] master: Polder: use citations.params. (7d3eb4d57)	CCTBX commit	Mon, 15 Oct 2018 09:59:26 -0700	151 lines
[git/cctbx] master: Polder: some refactoring. (11ff5fbd6)	CCTBX commit	Fri, 12 Oct 2018 17:09:54 -0700	910 lines
[git/cctbx] master: Polder tests: python2 --> python3. (0bcafa67c)	CCTBX commit	Fri, 12 Oct 2018 16:14:02 -0700	687 lines
[git/cctbx] master: Pass model object instead of hierarchy and xrs. (5fb6d8fb8)	CCTBX commit	Fri, 12 Oct 2018 15:40:15 -0700	418 lines
[git/cctbx] master: Factor of nearly 2x increase in loading speed by changing how experiments lists/reflection tables are concatenated together (f0459027a)	CCTBX commit	Fri, 12 Oct 2018 15:07:10 -0700	119 lines
[git/cctbx] master: Catch up to recent changes (2876b3213)	CCTBX commit	Fri, 12 Oct 2018 14:50:13 -0700	99 lines
[git/cctbx] master: For polder GUI. (5e4f8b11e)	CCTBX commit	Fri, 12 Oct 2018 14:38:35 -0700	132 lines
[git/cctbx] master: MolProbity: re-enable output of percentiles from Polygon (f1ccdc889)	CCTBX commit	Fri, 12 Oct 2018 14:21:36 -0700	323 lines
[git/cctbx] master: Using int run number in geoaccess method of psana (40b1b3a4c)	CCTBX commit	Fri, 12 Oct 2018 11:29:45 -0700	172 lines
[git/cctbx] master: Delete clutter. (39ec42662)	CCTBX commit	Fri, 12 Oct 2018 10:43:56 -0700	79 lines
[git/cctbx] master: Refactor polder to use the program template. (8b3e8df9e)	CCTBX commit	Fri, 12 Oct 2018 10:31:26 -0700	1301 lines
[git/cctbx] master: Refactor polder to use the program template. (19984599b)	CCTBX commit	Fri, 12 Oct 2018 10:31:26 -0700	158 lines
[git/cctbx] master: Add psana2 ebeam. (ddb229e57)	CCTBX commit	Fri, 12 Oct 2018 10:21:30 -0700	97 lines
[git/cctbx] master: Add MolProbityParser to handle CLI flag for outputting PDB JSON (c73dbaf9c)	CCTBX commit	Thu, 11 Oct 2018 20:10:28 -0700	557 lines
Jenkins 5a cctbx Tests build 7313 Fixed	DLS Jenkins	Fri, 12 Oct 2018 00:52:05 +0100	42 lines
[git/cctbx] master: BytesIO() bugfix (eab71b8ee)	CCTBX commit	Thu, 11 Oct 2018 16:47:25 -0700	509 lines
[git/cctbx] master: make SVM the default in ion picking (4e9205bcf)	CCTBX commit	Thu, 11 Oct 2018 16:34:39 -0700	81 lines
[git/cctbx] master: comments (9aa9c112b)	CCTBX commit	Thu, 11 Oct 2018 16:34:39 -0700	100 lines
[git/cctbx] master: Python 3 syntax updates (dc7805489)	CCTBX commit	Thu, 11 Oct 2018 16:18:56 -0700	158 lines
[git/cctbx] master: Add passalong parameter slow_tests=False for add_test_parallel. (e08ca1dbf)	CCTBX commit	Thu, 11 Oct 2018 15:40:24 -0700	119 lines
[git/cctbx] master: UI update (43263b317)	CCTBX commit	Thu, 11 Oct 2018 15:07:24 -0700	226 lines
[git/cctbx] master: Add flag slow_tests=False to libtbx.run_tests_parallel (15759f54b)	CCTBX commit	Wed, 10 Oct 2018 17:10:06 -0700	232 lines
[git/cctbx] master: MI: ability to use hydrogens in minimization. (c8096adc8)	CCTBX commit	Wed, 10 Oct 2018 17:00:34 -0700	260 lines
Jenkins CCTBX Branch Tests branch origin/dxtbx_stillstemplate Unstable	DLS Jenkins	Thu, 11 Oct 2018 00:32:40 +0100	50 lines
[git/cctbx] master: report memory in bytes, not in Kb on Windows (c7e197156)	CCTBX commit	Wed, 10 Oct 2018 23:01:38 +0100	87 lines
[git/cctbx] master: Update HDF5 to 1.10.3 (3610cb7cd)	CCTBX commit	Wed, 10 Oct 2018 08:54:33 +0100	94 lines
[git/cctbx] master: Update HDF5 and h5py (282c2e537)	CCTBX commit	Wed, 10 Oct 2018 08:54:33 +0100	108 lines
[git/cctbx] master: DataManager: preserve input file order (a7b45d806)	CCTBX commit	Tue, 9 Oct 2018 16:59:39 -0700	153 lines
[git/cctbx] master: phi/psi/2 changed (6279b7f78)	CCTBX commit	Tue, 9 Oct 2018 14:04:58 -0700	88 lines
[git/cctbx] master: Skip the test in DIALS testing environment. (2aa712326)	CCTBX commit	Tue, 9 Oct 2018 12:04:14 -0700	110 lines
Jenkins 5b cctbx MacOS build 3078 Fixed	DLS Jenkins	Tue, 9 Oct 2018 19:50:34 +0100	43 lines
[git/cctbx] master: DataManager: change type to per array instead of per file (565224a92)	CCTBX commit	Tue, 9 Oct 2018 11:05:06 -0700	1038 lines
Jenkins 5b cctbx MacOS build 3077 Unstable	DLS Jenkins	Tue, 9 Oct 2018 18:40:00 +0100	39 lines
[git/cctbx] master: Allow setting start residue number (0aef2d436)	CCTBX commit	Tue, 9 Oct 2018 11:10:24 -0600	94 lines
[git/cctbx] master: Reraise invalid spacegroup parameters errors to prevent such a model file be recognized as restraints file. (a22023b95)	CCTBX commit	Mon, 8 Oct 2018 15:10:13 -0700	139 lines
[git/cctbx] master: clean clutter (e53eeb148)	CCTBX commit	Mon, 8 Oct 2018 14:54:22 -0700	345 lines
[git/cctbx] master: added test for multiresidue class (f2af37fe8)	CCTBX commit	Mon, 8 Oct 2018 14:31:45 -0700	584 lines
[git/cctbx] master: corrected omega for 2 (51a30cf7f)	CCTBX commit	Mon, 8 Oct 2018 14:31:45 -0700	139 lines
[git/cctbx] master: moved stuff from qrefine (35b0d3a76)	CCTBX commit	Mon, 8 Oct 2018 14:31:45 -0700	1440 lines
[git/cctbx] master: small changes (70fcc4bb0)	CCTBX commit	Mon, 8 Oct 2018 14:31:45 -0700	106 lines
[git/cctbx] master: needed new file for all t96 tests work (8d1c63718)	CCTBX commit	Mon, 8 Oct 2018 14:31:45 -0700	798 lines
[git/cctbx] master: new interface to phi/psi/2 (60a547279)	CCTBX commit	Mon, 8 Oct 2018 14:31:45 -0700	109 lines
[git/cctbx] master: more options for terminii (02b7f669a)	CCTBX commit	Mon, 8 Oct 2018 14:31:45 -0700	140 lines
[git/cctbx] master: more succinct generators (269af9140)	CCTBX commit	Mon, 8 Oct 2018 14:31:45 -0700	1735 lines
[git/cctbx] master: checkpoint on current progress (9e5fb9223)	CCTBX commit	Mon, 8 Oct 2018 14:31:45 -0700	420 lines
[git/cctbx] master: start on true mutli residue generators (963a1218e)	CCTBX commit	Mon, 8 Oct 2018 14:31:45 -0700	1172 lines
[git/cctbx] master: all t96 tests work (f0f9963ad)	CCTBX commit	Mon, 8 Oct 2018 14:31:45 -0700	505 lines
[git/cctbx] master: added a start at fours and fives (64f40aa57)	CCTBX commit	Mon, 8 Oct 2018 14:31:45 -0700	788 lines
[git/cctbx] master: assertion to catch obvious input problems (674d81465)	CCTBX commit	Mon, 8 Oct 2018 11:49:35 -0700	82 lines
[git/cctbx] master: fix Build status: FAILURE which is not at all an over-reaction (d30095710)	CCTBX commit	Mon, 8 Oct 2018 14:37:48 +0100	85 lines
[git/cctbx] master: Putative support for Eiger installed at P14 at Petra III - configured from serial number to have vertical goniometer, no other changes. (8e468702b)	CCTBX commit	Mon, 8 Oct 2018 14:28:59 +0100	196 lines
[git/cctbx] master: Allow variable occ,B,resname in model from sites; fix position of atom name in test (38c694f80)	CCTBX commit	Fri, 5 Oct 2018 18:31:07 -0700	290 lines
[git/cctbx] master: Support CUDA implementation of nanoBragg_add_spots(). Guard against the possibility that *.cu source file is not present. If not present, compile and run will still work; will only fail if add_nanoBragg_spots_cuda() function is called. (5a1ba7c42)	CCTBX commit	Fri, 5 Oct 2018 13:53:16 -0700	683 lines
[git/cctbx] master: option to choose name prefix for plots. (3c9c5a84a)	CCTBX commit	Fri, 5 Oct 2018 13:05:53 -0700	110 lines
[git/cctbx] master: Support partitioning of hkl chunks to address MPI allttoall memory problem (ba1ea4cdb)	CCTBX commit	Fri, 5 Oct 2018 12:09:14 -0700	89 lines
[git/cctbx] master: Optionally slice hkl chunks into portions to address MPI alltoall memory problem; write all merged hkl's intensities out to an ascii file; optimize the step of distributing hkl's over chunks; switch to using flex module methods to calculate hkl intensity statistics; re-implement timing of algorithm steps to account for repeated steps; report memory usage for each MPI rank (039892a06)	CCTBX commit	Fri, 5 Oct 2018 12:09:14 -0700	1685 lines
[git/cctbx] master: Rejigger dxtbx.show_registry to accept a file name as an optional argument. If provided, only show the format classes that understand that argument. (7e167d323)	CCTBX commit	Fri, 5 Oct 2018 09:16:41 -0700	178 lines
Jenkins 5b cctbx MacOS build 3062 Fixed	DLS Jenkins	Thu, 4 Oct 2018 15:09:35 +0100	43 lines
Jenkins 5b cctbx MacOS build 3061 Failure	DLS Jenkins	Thu, 4 Oct 2018 12:10:14 +0100	23 lines
[git/cctbx] master: add phil parameters to override polarization_fraction and polarization_normal (aa024ad9b)	CCTBX commit	Thu, 4 Oct 2018 11:21:28 +0100	170 lines
Jenkins 5b cctbx MacOS build 3060 Unstable	DLS Jenkins	Thu, 4 Oct 2018 11:04:23 +0100	39 lines
[git/cctbx] master: Add d_ring_overlap_limit as parameter to small cell index and bug fix for checking for bad pixels. (090d1e98c)	CCTBX commit	Wed, 3 Oct 2018 13:45:20 -0700	192 lines
Jenkins 5b cctbx MacOS build 3057 Fixed	DLS Jenkins	Wed, 3 Oct 2018 20:06:42 +0100	43 lines
[git/cctbx] master: Dust off cctbx.small_cell_index (11c9f44ec)	CCTBX commit	Wed, 3 Oct 2018 12:00:17 -0700	578 lines
[git/cctbx] master: check return code to assert that process was terminated (dd7356ae4)	CCTBX commit	Wed, 3 Oct 2018 11:43:29 -0700	94 lines
Jenkins 5b cctbx MacOS build 3056 Unstable	DLS Jenkins	Wed, 3 Oct 2018 17:48:22 +0100	39 lines
[git/cctbx] master: Tweaks for bootstrap building phaser with MinGW compiler on Windows (1bfe76442)	CCTBX commit	Wed, 3 Oct 2018 17:08:55 +0100	177 lines
Jenkins 5b cctbx MacOS build 3055 Fixed	DLS Jenkins	Wed, 3 Oct 2018 12:33:48 +0100	42 lines
[git/cctbx] master: Increase specificity of FormatBrukerFixedChi (8d6da6cc6)	CCTBX commit	Wed, 3 Oct 2018 10:15:24 +0100	268 lines
Jenkins 5b cctbx MacOS build 3054 Unstable	DLS Jenkins	Wed, 3 Oct 2018 07:39:27 +0100	39 lines
[git/cctbx] master: MI: exposing more parameters. (d74032db5)	CCTBX commit	Tue, 2 Oct 2018 16:32:40 -0700	139 lines
[git/cctbx] master: MI:calculate and output phi-psi-2 validations. (eeb72dbd9)	CCTBX commit	Tue, 2 Oct 2018 13:08:41 -0700	152 lines
[git/cctbx] master: remove reference to undeclared variable (4eb06e107)	CCTBX commit	Mon, 1 Oct 2018 10:29:04 +0100	87 lines
[git/cctbx] master: sigh (01ebd9471)	CCTBX commit	Mon, 1 Oct 2018 02:10:56 -0700	88 lines
[git/cctbx] master: not all except lines were updated (da80d0daa)	CCTBX commit	Sun, 30 Sep 2018 20:40:22 -0700	88 lines

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