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June 2021

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Subject	From	Date	Size
[git/cctbx_project] master: XFEL GUI: first pass at adding phenix jobs as final step after merging for automatic refinement (e373c4e4c7)	CCTBX commit	Wed, 30 Jun 2021 15:15:12 -0700	1451 lines
[git/cctbx_project] master: Set map and model when not specified (d1a81a54a1)	CCTBX commit	Wed, 30 Jun 2021 13:45:16 -0700	180 lines
[git/cctbx_project] master: clean clutter (f919c49060)	CCTBX commit	Mon, 28 Jun 2021 20:39:08 -0700	64 lines
[git/cctbx_project] master: make dummy map_manager when requested (0b99c4a117)	CCTBX commit	Mon, 28 Jun 2021 20:23:27 -0700	105 lines
[git/dxtbx] main: DIALS 3.5.2 Changelog (c92f9946)	DXTBX commit	Mon, 28 Jun 2021 19:21:21 +0100	128 lines
[git/dxtbx] main: Azure job restructuring (#390) (00761127)	DXTBX commit	Mon, 28 Jun 2021 14:48:16 +0100	714 lines
[git/cctbx_project] master: Python bindings for parts of LatticeRepLib (#619) (a7fcb23287)	CCTBX commit	Mon, 28 Jun 2021 08:54:53 -0400	864 lines
[git/dxtbx] main: Fix error reading BioMAX data with H5py>=3.3 (#389) (fbd4f263)	DXTBX commit	Mon, 28 Jun 2021 11:08:27 +0100	109 lines
[git/cctbx_project] master: clean clutter (c782f3906f)	CCTBX commit	Sat, 26 Jun 2021 06:46:21 -0700	64 lines
[git/cctbx_project] master: Keep track of rmsd info (c943c8bebd)	CCTBX commit	Sat, 26 Jun 2021 06:11:12 -0700	131 lines
[git/cctbx_project] master: clean clutter (a42bf90490)	CCTBX commit	Fri, 25 Jun 2021 17:25:44 -0600	64 lines
[git/cctbx_project] master: Update instructions (3a8efb6d60)	CCTBX commit	Fri, 25 Jun 2021 11:15:07 -0700	97 lines
[git/cctbx_project] master: Add instructions for simple_parallel (12f7bd99f8)	CCTBX commit	Fri, 25 Jun 2021 12:07:03 -0600	226 lines
[git/cctbx_project] master: Update simple_parallel (76704b0f66)	CCTBX commit	Fri, 25 Jun 2021 09:52:37 -0700	322 lines
[git/cctbx_project] master: Temporary fix in psana envs for issue #627 (89fa3008a9)	CCTBX commit	Fri, 25 Jun 2021 07:29:54 -0700	130 lines
[git/dxtbx] main: End forced DLS I03 Eiger masking period (#385) (bfaa6366)	DXTBX commit	Fri, 25 Jun 2021 14:42:42 +0100	125 lines
[git/dxtbx] main: Remove os.chdir() calls (#386) (5491d04a)	DXTBX commit	Fri, 25 Jun 2021 14:41:16 +0100	636 lines
[git/dxtbx] main: More gracefully handle cleanup of test temporary files (#388) (1a5eef17)	DXTBX commit	Fri, 25 Jun 2021 14:38:27 +0100	219 lines
[git/cctbx_project] master: remove clutter (95018ab712)	CCTBX commit	Thu, 24 Jun 2021 18:51:02 -0700	66 lines
[git/cctbx_project] master: Keep track of dummy map_manager (fb3e0b13a3)	CCTBX commit	Thu, 24 Jun 2021 18:49:00 -0700	510 lines
[git/dxtbx] main: Accept a missing χ or φ axis in dlsnxs2cbf (#387) (fd1dc274)	DXTBX commit	Thu, 24 Jun 2021 17:06:30 +0100	248 lines
[git/dxtbx] main: restrict numpy to 1.20, cctbx/cctbx_project#627 (ecd4ff10)	DXTBX commit	Wed, 23 Jun 2021 10:03:32 +0100	88 lines
[git/cctbx_project] master: Update ensemble refinement (#625) (0af5a0e7b9)	CCTBX commit	Tue, 22 Jun 2021 11:20:49 -0700	722 lines
[git/cctbx_project] master: clean clutter (bcd372496e)	CCTBX commit	Mon, 21 Jun 2021 11:59:46 -0700	64 lines
[git/cctbx_project] master: Add dummy crystal_symmetry (b7a46a2abf)	CCTBX commit	Mon, 21 Jun 2021 07:56:17 -0700	157 lines
[git/dxtbx] main: Print detailed information about HDF5 errors (#374) (f899da72)	DXTBX commit	Mon, 21 Jun 2021 14:36:47 +0100	125 lines
[git/cctbx_project] master: scitbx: fix segmentation fault in flex.size_t on Windows (8a572444f4)	CCTBX commit	Sat, 19 Jun 2021 19:23:56 -0700	100 lines
[git/cctbx_project] master: merge border regions (6e928af82f)	CCTBX commit	Fri, 18 Jun 2021 18:51:23 -0700	145 lines
[git/cctbx_project] master: do not use simplified alg-a by default (39b83bc7a1)	CCTBX commit	Thu, 17 Jun 2021 18:00:05 -0700	92 lines
[git/cctbx_project] master: always use simple model first (1f8546ccfa)	CCTBX commit	Thu, 17 Jun 2021 11:17:54 -0700	156 lines
[git/dxtbx] main: Remove DataBlock dependency for ExperimentList.from_templates (#381) (7d071992)	DXTBX commit	Thu, 17 Jun 2021 16:57:12 +0100	459 lines
[git/dxtbx] main: Fix azure build by pinning cctbx_project (#384) (91b71031)	DXTBX commit	Thu, 17 Jun 2021 15:49:50 +0100	161 lines
[git/cctbx_project] master: try 50 (7cdb143fe5)	CCTBX commit	Thu, 17 Jun 2021 00:07:08 -0700	92 lines
[git/cctbx_project] master: Treat weak features (and separately) (390bc08ecc)	CCTBX commit	Wed, 16 Jun 2021 17:04:19 -0700	260 lines
[git/cctbx_project] master: Lunus merging worker (#622) (9e5ad28c9f)	CCTBX commit	Wed, 16 Jun 2021 17:02:13 -0700	744 lines
[git/cctbx_project] master: move flag to a correct location (889c496f3d)	CCTBX commit	Wed, 16 Jun 2021 15:01:32 -0700	124 lines
[git/cctbx_project] master: Treat regions 10	CCTBX commit	Wed, 16 Jun 2021 13:42:50 -0700	193 lines
[git/cctbx_project] master: possibly save a few ms by using scitbx.math rotation matrix (e9f1ddaa16)	CCTBX commit	Wed, 16 Jun 2021 10:50:51 -0700	131 lines
[git/cctbx_project] master: Enable simplified mosaic (a option) (858434560c)	CCTBX commit	Tue, 15 Jun 2021 15:55:13 -0700	713 lines
[git/cctbx_project] master: README: just run all conda tests at the same time (5d40ae6bbf)	CCTBX commit	Mon, 14 Jun 2021 17:21:59 -0700	109 lines
[git/dxtbx] main: DIALS 3.5.1 Changelog (7ea001a5)	DXTBX commit	Mon, 14 Jun 2021 15:01:34 +0100	132 lines
[git/cctbx_project] master: README: updates for nightly build (e9b1146d7d)	CCTBX commit	Sun, 13 Jun 2021 16:18:24 -0700	120 lines
[git/cctbx_project] master: xfel.merge modify_cosym: match new behavior in dials commit 1cd5afe42 (ee6176bfcf)	CCTBX commit	Fri, 11 Jun 2021 12:59:06 -0700	238 lines
[git/dxtbx] main: Extend duration of I03 bad module mask (#370) (aef57b7c)	DXTBX commit	Fri, 11 Jun 2021 15:12:47 +0100	125 lines
[git/cctbx_project] master: Explicitly include dxtbx headers in xfel (933f6e9d83)	CCTBX commit	Fri, 11 Jun 2021 14:56:09 +0100	94 lines
[git/cctbx_project] master: Allow subclassing of sharing_handle (#618) (ab8949cd76)	CCTBX commit	Fri, 11 Jun 2021 10:26:16 +0100	156 lines
[git/cctbx_project] master: README: update badge (e8c027d42a)	CCTBX commit	Thu, 10 Jun 2021 23:47:48 -0700	124 lines
[git/cctbx_project] master: README: add information about nightly builds (aaf1905558)	CCTBX commit	Thu, 10 Jun 2021 23:12:13 -0700	780 lines
[git/cctbx_project] master: Add pandas to the psana environments (5e5818d598)	CCTBX commit	Thu, 10 Jun 2021 17:04:05 -0700	109 lines
[git/cctbx_project] master: cctbx.xfel.merge: add program defaults phil string (818c407a18)	CCTBX commit	Thu, 10 Jun 2021 14:45:23 -0700	113 lines
[git/dxtbx] main: Reduce reliance on libtbx.dist_path in tests (#380) (1a7a3f66)	DXTBX commit	Thu, 10 Jun 2021 16:36:52 +0100	376 lines
[git/cctbx_project] master: Fix xfel_regression test failures involving modify_cosym (955d97d680)	CCTBX commit	Thu, 10 Jun 2021 08:35:30 -0700	144 lines
[git/cctbx_project] master: CI: disable Base tests (37ae54090d)	CCTBX commit	Wed, 9 Jun 2021 21:30:37 -0700	120 lines
[git/cctbx_project] master: added a link and fixed some typos (84505796f1)	CCTBX commit	Wed, 9 Jun 2021 18:06:41 -0700	202 lines
[git/cctbx_project] master: Use bytes as IO for detector_image_as_png (df049ff7d2)	CCTBX commit	Wed, 9 Jun 2021 10:52:17 -0700	126 lines
[git/dxtbx] main: Cope gracefully with scans wrapping around 0° (#379) (6af539f2)	DXTBX commit	Wed, 9 Jun 2021 09:25:59 +0100	177 lines
[git/cctbx_project] master: XFEL GUI: add auto update toggle to the runstats and unit cell tabs, add hide options toggle to runstats tab (9e2053cbaf)	CCTBX commit	Tue, 8 Jun 2021 12:43:36 -0700	882 lines
[git/cctbx_project] master: XFEL GUI: add clusters plot to unit cell tab, using the uc_metrics.db_scan algorithm (610da1239c)	CCTBX commit	Mon, 7 Jun 2021 17:30:12 -0700	430 lines
[git/cctbx_project] master: bug fix: order matters (a640330e05)	CCTBX commit	Mon, 7 Jun 2021 15:00:47 -0700	90 lines
[git/cctbx_project] master: DataManager: add short_caption for miller_array datatype (24f1ca7875)	CCTBX commit	Sun, 6 Jun 2021 17:14:05 -0700	91 lines
[git/cctbx_project] master: clean clutter (1a5e3a3003)	CCTBX commit	Sun, 6 Jun 2021 11:43:30 -0700	64 lines
[git/cctbx_project] master: Add method to get a map_model_manager from a model (1360e9b926)	CCTBX commit	Sun, 6 Jun 2021 11:04:15 -0700	167 lines
[git/cctbx_project] master: XFEL UI: embed matplotlib canvas for unit cell tab (438eece5cb)	CCTBX commit	Fri, 4 Jun 2021 15:48:50 -0700	369 lines
[git/cctbx_project] master: XFEL UI: embed matplotlib canvas for run stats tab (03b5d67a1b)	CCTBX commit	Fri, 4 Jun 2021 15:48:50 -0700	535 lines
[git/cctbx_project] master: typo and new class of ligand parents (dcccbe852f)	CCTBX commit	Fri, 4 Jun 2021 14:39:30 -0700	106 lines
[git/dxtbx] main: Build against cctbx 2021.5 (#375) (2cb9ef28)	DXTBX commit	Fri, 4 Jun 2021 20:06:54 +0100	100 lines
[git/cctbx_project] master: Sync xtc_process with dials/dials#1569, a mask generation API change (f3321b75b0)	CCTBX commit	Thu, 3 Jun 2021 17:17:41 -0700	137 lines
[git/dxtbx] main: Add hdf5plugin dependency (#373) (289b29fb)	DXTBX commit	Thu, 3 Jun 2021 16:29:40 +0100	209 lines
[git/dxtbx] main: Add timezone check to format/FormatSMVADSCSN442.py (#369) (c9cc5152)	DXTBX commit	Thu, 3 Jun 2021 16:15:02 +0100	125 lines
[git/dxtbx] main: remove ExperimentListTemplateImporter (0f28d541)	DXTBX commit	Thu, 3 Jun 2021 16:09:16 +0100	144 lines
[git/cctbx_project] master: README: update badge links for nightly tests (d353f80995)	CCTBX commit	Thu, 3 Jun 2021 03:52:33 -0700	327 lines
[git/cctbx_project] master: rstbx: simplify how test data is loaded (50b3afb8e6)	CCTBX commit	Wed, 2 Jun 2021 22:55:58 -0700	170 lines
[git/cctbx_project] master: Add whole map sd for postprocessing; use original binning in A2013 in mosaic (b38f2f82e5)	CCTBX commit	Wed, 2 Jun 2021 18:53:08 -0700	248 lines
[git/cctbx_project] master: smtbx: skip fast_linalg checks if module is not available (922ef0b55c)	CCTBX commit	Wed, 2 Jun 2021 15:11:42 -0700	110 lines
[git/cctbx_project] master: cctbx: update boost import in test (596db3ec07)	CCTBX commit	Wed, 2 Jun 2021 12:36:13 -0700	94 lines
[git/cctbx_project] master: CI: ignore data cache update errors (980abc140f)	CCTBX commit	Wed, 2 Jun 2021 11:28:10 -0700	185 lines
[git/cctbx_project] master: sphinx: remove SCons txt (moved to new page) (d01878eb93)	CCTBX commit	Wed, 2 Jun 2021 11:07:21 -0700	231 lines
[git/cctbx_project] master: sphinx doc: remove txt about hierarchy (moved to new page) (028f03c00b)	CCTBX commit	Wed, 2 Jun 2021 10:48:17 -0700	2001 lines
[git/cctbx_project] master: cctbx doc: add page about pdb hierarchy (edf8b12ff0)	CCTBX commit	Tue, 1 Jun 2021 21:16:30 -0700	2430 lines
[git/cctbx_project] master: merge bins (01e565f4ea)	CCTBX commit	Tue, 1 Jun 2021 18:57:33 -0700	185 lines
[git/cctbx_project] tag 'v2021.5' created	CCTBX commit	Tue, 1 Jun 2021 16:10:01 -0700	40 lines
[git/cctbx_project] master: Update CHANGELOG.rst for 2021.5 release (b74e38d7bb)	CCTBX commit	Tue, 1 Jun 2021 16:10:01 -0700	90 lines
[git/cctbx_project] master: quote a multiword phil param (71036982ef)	CCTBX commit	Tue, 1 Jun 2021 12:37:29 -0700	90 lines
[git/cctbx_project] master: fix tdata readme (6db8f96f63)	CCTBX commit	Tue, 1 Jun 2021 12:04:03 -0700	91 lines
[git/cctbx_project] master: check for python version running the GUI (a4a4a13f8d)	CCTBX commit	Tue, 1 Jun 2021 16:22:59 +0100	120 lines
[git/cctbx_project] master: clean clutter (33597dc3e6)	CCTBX commit	Tue, 1 Jun 2021 07:59:58 -0700	64 lines
[git/cctbx_project] master: Minor changes; allow model with shift set (aed5302019)	CCTBX commit	Tue, 1 Jun 2021 07:34:28 -0700	325 lines
[git/cctbx_project] master: Better bookkeeping of regions (b79a507f05)	CCTBX commit	Mon, 31 May 2021 18:25:06 -0700	201 lines
[git/cctbx_project] master: scitbx: skip fast_linalg checks if module is not available (ded4fc3744)	CCTBX commit	Mon, 31 May 2021 14:48:43 -0700	119 lines

CCTBX-COMMIT Archives

June 2021

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