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November 2019

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Subject	From	Date	Size
[git/cctbx_project] master: clean clutter (46f1c5c149)	CCTBX commit	Fri, 29 Nov 2019 15:47:25 -0700	62 lines
[git/cctbx_project] master: Add external_map_file to params for segment_and_split (509d9f20ae)	CCTBX commit	Fri, 29 Nov 2019 14:31:10 -0800	108 lines
[git/cctbx_project] master: Remove duplication (e06192d5f2)	CCTBX commit	Fri, 29 Nov 2019 14:22:08 -0800	151 lines
[git/cctbx_project] master: Make sure expand size is at least 1 (73c390926f)	CCTBX commit	Fri, 29 Nov 2019 14:15:11 -0800	92 lines
[git/cctbx_project] master: Allow external map sharpening (cf0d786cb8)	CCTBX commit	Thu, 28 Nov 2019 15:37:13 -0700	656 lines
[git/cctbx_project] master: Bug fix: allow reloading of the same file (7713ecc255)	CCTBX commit	Thu, 28 Nov 2019 18:27:55 +0000	668 lines
[git/dxtbx] master: Use panel.add_mask() to mask bad modules (#121) (5d912d5)	DXTBX commit	Thu, 28 Nov 2019 16:20:07 +0000	408 lines
[git/cctbx_project] master: Update SCons to 3.1.1 (#423) (88436dedf3)	CCTBX commit	Thu, 28 Nov 2019 07:59:54 +0000	106 lines
[git/cctbx_project] master: corner case (9239352b2b)	CCTBX commit	Wed, 27 Nov 2019 16:59:07 -0800	87 lines
[git/cctbx_project] master: Using new release of the NGL.js library file. Towards better controlling clip planes. (334860a2a5)	CCTBX commit	Wed, 27 Nov 2019 18:40:08 +0000	84 lines
[git/cctbx_project] master: Handle any spaces in installation path name on Windows as to avoid Visual Studio redistributables failing to install (7176d62d51)	CCTBX commit	Wed, 27 Nov 2019 18:40:07 +0000	117 lines
[git/cctbx_project] master: new entity class (f459e39db2)	CCTBX commit	Wed, 27 Nov 2019 09:57:33 -0800	92 lines
Jenkins 5a cctbx Tests build 9384 Fixed	DLS Jenkins	Wed, 27 Nov 2019 13:32:09 +0000	43 lines
[git/cctbx_project] master: allow specifying a build cache directory (bdda15a585)	CCTBX commit	Wed, 27 Nov 2019 13:25:20 +0000	103 lines
Jenkins 5a cctbx Tests build 9383 Failure	DLS Jenkins	Wed, 27 Nov 2019 11:35:11 +0000	104 lines
[git/dxtbx] master: New dead module locations (8376879)	DXTBX commit	Wed, 27 Nov 2019 10:59:47 +0000	106 lines
[git/cctbx_project] master: Initial plumbing to enable cartesian NCS manager to use ncs_restraints_group_list for outputting information. (9b53b7d7fb)	CCTBX commit	Tue, 26 Nov 2019 16:36:44 -0800	223 lines
[git/cctbx_project] master: Add sharpening based on adjusted path length and fix minor printout bug in map_box (352b218a3b)	CCTBX commit	Tue, 26 Nov 2019 17:13:32 -0700	526 lines
[git/cctbx_project] master: More robust comparison. This fixes phenix_regression/real_space_refine/tst_09.py (abce887d21)	CCTBX commit	Tue, 26 Nov 2019 15:51:15 -0800	123 lines
[git/cctbx_project] master: simple option to not write PyMOL files (39c3e846af)	CCTBX commit	Tue, 26 Nov 2019 15:39:04 -0800	125 lines
[git/cctbx_project] master: Bug fix, this function lacks a test (d4ae724046)	CCTBX commit	Tue, 26 Nov 2019 15:38:25 -0800	141 lines
[git/cctbx_project] master: py3... (a68e0f6e54)	CCTBX commit	Tue, 26 Nov 2019 15:03:28 -0800	106 lines
[git/cctbx_project] master: hide option (8104244744)	CCTBX commit	Tue, 26 Nov 2019 14:46:00 -0800	89 lines
[git/cctbx_project] master: Added test for CDL-SVL (c5b28ab224)	CCTBX commit	Tue, 26 Nov 2019 14:46:00 -0800	84 lines
[git/cctbx_project] master: moving towards CDL-SVL for cis and trans (995860909e)	CCTBX commit	Tue, 26 Nov 2019 14:46:00 -0800	196 lines
[git/cctbx_project] master: CDL-SVL overrides CDL if requested (14864d5093)	CCTBX commit	Tue, 26 Nov 2019 14:46:00 -0800	249 lines
[git/cctbx_project] master: Added CDL-SVL for cis (trans available but not coded). (999cfc9fc8)	CCTBX commit	Tue, 26 Nov 2019 14:46:00 -0800	255 lines
[git/cctbx_project] master: ready for production (b805f0c3dd)	CCTBX commit	Tue, 26 Nov 2019 14:46:00 -0800	262 lines
[git/cctbx_project] master: Added CDL-SVL database file (f5a4d155af)	CCTBX commit	Tue, 26 Nov 2019 14:46:00 -0800	244 lines
[git/cctbx_project] master: cablam: update py3 fix to check against None instead (2b62a9fd76)	CCTBX commit	Tue, 26 Nov 2019 13:03:01 -0800	150 lines
[git/dxtbx] master: If updating oscillation, update is_still (2a91b57)	DXTBX commit	Tue, 26 Nov 2019 11:19:47 +0000	98 lines
Jenkins 5a cctbx Tests build 9377 Fixed	DLS Jenkins	Tue, 26 Nov 2019 09:59:12 +0000	43 lines
Jenkins 5a cctbx Tests build 9376 Failure	DLS Jenkins	Tue, 26 Nov 2019 09:21:52 +0000	151 lines
[git/dxtbx] master: drop libtbx testing compatibility layer (#120) (1090499)	DXTBX commit	Tue, 26 Nov 2019 09:16:09 +0000	154 lines
[git/cctbx_project] master: Py3 compatibility (55aad7257e)	CCTBX commit	Mon, 25 Nov 2019 17:06:16 -0800	266 lines
[git/cctbx_project] master: Py3 compatibility Tom's code (e9e2f1dc2d)	CCTBX commit	Mon, 25 Nov 2019 17:06:02 -0800	93 lines
[git/cctbx_project] master: Py3 compatibility Chris' code (15a07d103c)	CCTBX commit	Mon, 25 Nov 2019 17:05:46 -0800	87 lines
[git/cctbx_project] master: bugfix (f26eb1b79b)	CCTBX commit	Mon, 25 Nov 2019 16:52:09 -0800	141 lines
[git/cctbx_project] master: Fix a python3 bug in appending a tuple to a flex.miller_index array. (51cfd9e7cb)	CCTBX commit	Mon, 25 Nov 2019 16:42:51 -0800	98 lines
[git/cctbx_project] master: show processing results if image viewer launched from IOTA (#420) (a284c6ab73)	CCTBX commit	Mon, 25 Nov 2019 15:09:33 -0800	708 lines
[git/cctbx_project] master: more testing modules (d7287f98b9)	CCTBX commit	Mon, 25 Nov 2019 14:42:23 -0800	139 lines
[git/cctbx_project] master: some ensemble sizes are not equal (31448a84c2)	CCTBX commit	Mon, 25 Nov 2019 14:32:25 -0800	99 lines
[git/cctbx_project] master: Improve selection of model (713523d847)	CCTBX commit	Mon, 25 Nov 2019 14:27:28 -0800	85 lines
[git/cctbx_project] master: add extension (c4c0bc10ea)	CCTBX commit	Mon, 25 Nov 2019 14:27:28 -0800	90 lines
[git/cctbx_project] master: Rama-Z: plotting functionality (e31d86929b)	CCTBX commit	Mon, 25 Nov 2019 14:27:28 -0800	344 lines
[git/cctbx_project] master: PRIME Python 3.8 syntax fix (0607c84c17)	CCTBX commit	Mon, 25 Nov 2019 13:02:26 -0800	100 lines
[git/cctbx_project] master: CI: bump CentOS 7 to 7.7.1908 (2153cd14c3)	CCTBX commit	Mon, 25 Nov 2019 12:41:43 -0800	94 lines
[git/cctbx_project] master: bad imports fix (693793cfae)	CCTBX commit	Mon, 25 Nov 2019 12:06:56 -0800	119 lines
[git/cctbx_project] master: Bug fixes, returning camera distance in additional list element rather than overwriting the 15th. Towards better controlling clip planes when rotating stage. Calling ProcessMessages() in closeEvent() to terminate GUI correctly. (a84b09419a)	CCTBX commit	Mon, 25 Nov 2019 19:39:50 +0000	438 lines
[git/cctbx_project] master: ProgramTemplate: generalize default output name (8de38fddcc)	CCTBX commit	Mon, 25 Nov 2019 09:57:47 -0800	338 lines
[git/cctbx_project] master: Remove assert that otherwises causes error on empty files (271197be1d)	CCTBX commit	Mon, 25 Nov 2019 17:00:44 +0000	91 lines
[git/dxtbx] master: Catch an exception if image_file has zero bytes (#522) (edc9ded)	DXTBX commit	Mon, 25 Nov 2019 16:56:11 +0000	97 lines
Jenkins 5b cctbx MacOS build 4446 Failure	DLS Jenkins	Mon, 25 Nov 2019 12:56:38 +0000	637 lines
[git/cctbx_project] master: Correct spelling (63e98cc636)	CCTBX commit	Mon, 25 Nov 2019 09:55:00 +0000	193 lines
Jenkins 5a cctbx Tests build 9363 Fixed	DLS Jenkins	Sun, 24 Nov 2019 21:51:17 +0000	42 lines
[git/cctbx_project] master: Update expected outputs after fixing error in utils/__init__.py where original instead of box crystal symmetry was used in smoothing (44cf587faa)	CCTBX commit	Sun, 24 Nov 2019 13:27:16 -0800	117 lines
[git/cctbx_project] master: Automatic boundary decision for soft_mask on edge of cell (b6570adeed)	CCTBX commit	Sat, 23 Nov 2019 17:12:09 -0800	92 lines
Jenkins 5a cctbx Tests build 9361 Unstable	DLS Jenkins	Sat, 23 Nov 2019 19:57:58 +0000	38 lines
[git/cctbx_project] master: Fix map-box bug in using cs vs self.box_crystal_symmetry and use border of 2 grid units always in apply_soft_mask (778f6b5a64)	CCTBX commit	Sat, 23 Nov 2019 11:34:35 -0800	226 lines
[git/cctbx_project] master: added functionality for D and tests... (c8da883c87)	CCTBX commit	Fri, 22 Nov 2019 16:58:56 -0800	732 lines
[git/cctbx_project] master: added condiftional CYS HG (d137b36d77)	CCTBX commit	Fri, 22 Nov 2019 15:32:40 -0800	1077 lines
[git/cctbx_project] master: allow for adding deuterium (66a4cb35e4)	CCTBX commit	Fri, 22 Nov 2019 15:32:40 -0800	126 lines
[git/cctbx_project] master: Fix unicode parsing of dispatchers for py3 for docker images (like azure) (fd05530454)	CCTBX commit	Fri, 22 Nov 2019 15:08:23 -0800	759 lines
[git/cctbx_project] master: Dials branch is live (56a169cdfd)	CCTBX commit	Fri, 22 Nov 2019 15:08:23 -0800	88 lines
[git/cctbx_project] master: Add CS6Dist stubs (114f631f0a)	CCTBX commit	Fri, 22 Nov 2019 13:44:58 -0800	205 lines
[git/cctbx_project] master: Windows fix (7c0482d92c)	CCTBX commit	Fri, 22 Nov 2019 12:48:15 -0800	95 lines
[git/cctbx_project] master: Bug fixes: creating and deleting vectors, getting camera distance. Using clip_plane_vector() rather than clip_plane_hkl_vector() and clip_plane_abc_vector() (910cfc8cb9)	CCTBX commit	Fri, 22 Nov 2019 17:56:20 +0000	1074 lines
[git/dxtbx] master: Trim one-line docstrings (3365897)	DXTBX commit	Fri, 22 Nov 2019 16:49:30 +0000	2328 lines
Jenkins 5b cctbx MacOS build 4443 Still Failing	DLS Jenkins	Fri, 22 Nov 2019 07:54:54 +0000	637 lines
[git/cctbx_project] master: minor printout change (76721dd5ce)	CCTBX commit	Thu, 21 Nov 2019 19:24:17 -0700	94 lines
[git/cctbx_project] master: UI and backend bugfixes (#418) (9bfc0a6fa3)	CCTBX commit	Thu, 21 Nov 2019 18:00:59 -0800	1242 lines
Jenkins 5b cctbx MacOS build 4442 Failure	DLS Jenkins	Fri, 22 Nov 2019 00:39:47 +0000	630 lines
[git/cctbx_project] master: Encode strings with utf-8 to use hashlib under python3. (3b02004c86)	CCTBX commit	Thu, 21 Nov 2019 15:29:51 -0800	114 lines
[git/cctbx_project] master: clean clutter (c67b79728f)	CCTBX commit	Thu, 21 Nov 2019 15:11:42 -0800	83 lines
[git/cctbx_project] master: added common_saccharide (f884846ec2)	CCTBX commit	Thu, 21 Nov 2019 14:44:22 -0800	197 lines
[git/cctbx_project] master: start on adding main atoms (9fc988983f)	CCTBX commit	Thu, 21 Nov 2019 14:44:22 -0800	474 lines
[git/cctbx_project] master: small reorg (3fb3cedb38)	CCTBX commit	Thu, 21 Nov 2019 14:44:22 -0800	333 lines
[git/cctbx_project] master: start on threes for main chain repair/build (f708ced87d)	CCTBX commit	Thu, 21 Nov 2019 14:44:22 -0800	230 lines
[git/cctbx_project] master: putting back a mistake conflict resolution (960ef6b006)	CCTBX commit	Thu, 21 Nov 2019 14:44:22 -0800	94 lines
[git/cctbx_project] master: small progress (40d7863d84)	CCTBX commit	Thu, 21 Nov 2019 14:44:22 -0800	189 lines
[git/cctbx_project] master: conflict problem (618852ead4)	CCTBX commit	Thu, 21 Nov 2019 14:44:22 -0800	138 lines
[git/cctbx_project] master: moving forward (11b8a62678)	CCTBX commit	Thu, 21 Nov 2019 14:44:22 -0800	912 lines
[git/dxtbx] master: Registry is no more (a6456ab)	DXTBX commit	Thu, 21 Nov 2019 14:12:32 +0000	113 lines
Jenkins 5b cctbx MacOS build 4439 Fixed	DLS Jenkins	Thu, 21 Nov 2019 00:17:28 +0000	43 lines
[git/cctbx_project] master: Allow user specified masks (4931ac0bf7)	CCTBX commit	Wed, 20 Nov 2019 14:05:29 -0800	322 lines
Jenkins 5b cctbx MacOS build 4438 Still Unstable	DLS Jenkins	Wed, 20 Nov 2019 21:07:24 +0000	51 lines
[git/cctbx_project] master: phil: use context manager for opening files Thanks @Anthchirp! (ffe43396fb)	CCTBX commit	Wed, 20 Nov 2019 12:25:40 -0800	94 lines
Jenkins 5b cctbx MacOS build 4437 Unstable	DLS Jenkins	Wed, 20 Nov 2019 19:45:19 +0000	35 lines
[git/cctbx_project] master: in progress: fixing clip plane updates (c892af106e)	CCTBX commit	Wed, 20 Nov 2019 19:04:57 +0000	1082 lines
[git/cctbx_project] master: better docs (05ae51b1ef)	CCTBX commit	Wed, 20 Nov 2019 09:29:24 -0800	105 lines
[git/cctbx_project] master: test now tests GLU (fcddbe3378)	CCTBX commit	Wed, 20 Nov 2019 07:28:11 -0800	530 lines
[git/cctbx_project] master: start of side-chain acid H atoms (e523b3aa83)	CCTBX commit	Tue, 19 Nov 2019 16:23:02 -0800	587 lines
[git/cctbx_project] master: phil: use utf-8 for parameter files (90d4b9091b)	CCTBX commit	Tue, 19 Nov 2019 14:49:46 -0800	113 lines
[git/cctbx_project] master: added C-N-CD to cis-PRO restraints (0a7abfb156)	CCTBX commit	Tue, 19 Nov 2019 13:23:40 -0800	249 lines
[git/cctbx_project] master: still not working (a08e1ed709)	CCTBX commit	Tue, 19 Nov 2019 13:23:40 -0800	278 lines
[git/cctbx_project] master: adjusted test (f3e4433cdd)	CCTBX commit	Tue, 19 Nov 2019 13:23:40 -0800	113 lines
[git/cctbx_project] master: added CG and all the EH99 restraints for cis-PRO (ca3f67e1f0)	CCTBX commit	Tue, 19 Nov 2019 13:23:40 -0800	368 lines
[git/cctbx_project] master: better calls for cis-PRO (a287aeb462)	CCTBX commit	Tue, 19 Nov 2019 13:23:40 -0800	412 lines
[git/cctbx_project] master: Tidy up and bug fixes (a06a984081)	CCTBX commit	Tue, 19 Nov 2019 13:23:40 -0800	228 lines
[git/cctbx_project] master: correct the cis-peptide angles (6220d1d64f)	CCTBX commit	Tue, 19 Nov 2019 13:23:40 -0800	259 lines
[git/cctbx_project] master: Towards updating GUI clipplane settings as appropriate, toying with shapeComp.autoView() and set_volatile_params() (e02ee85137)	CCTBX commit	Tue, 19 Nov 2019 18:35:12 +0000	750 lines
[git/dxtbx] master: Remove deprecated classes/functions/parameters (#115) (bc0b3d3)	DXTBX commit	Tue, 19 Nov 2019 15:08:53 +0000	695 lines
[git/cctbx_project] master: clean clutter (34685978dc)	CCTBX commit	Mon, 18 Nov 2019 17:53:47 -0700	62 lines
[git/cctbx_project] master: Typo (lsf->lfs) (83d47cff02)	CCTBX commit	Mon, 18 Nov 2019 16:36:51 -0800	88 lines
[git/cctbx_project] master: Add git lfs step (7611f957ba)	CCTBX commit	Mon, 18 Nov 2019 16:28:46 -0800	98 lines
[git/cctbx_project] master: Bugfix for Azure XFEL (896b64458a)	CCTBX commit	Mon, 18 Nov 2019 16:20:49 -0800	88 lines
[git/cctbx_project] master: Add NCDist repo to xfel builder (4b1be6d530)	CCTBX commit	Mon, 18 Nov 2019 16:12:52 -0800	124 lines
[git/cctbx_project] master: Add xfel azure pipeline (0e1112310e)	CCTBX commit	Mon, 18 Nov 2019 16:12:52 -0800	930 lines
[git/cctbx_project] master: Rename xfel builder to xfellegacy and add new xfel builder (569a76ebb1)	CCTBX commit	Mon, 18 Nov 2019 16:12:52 -0800	261 lines
[git/cctbx_project] master: require resolution for auto_mask_if_no_model (22e8a50e22)	CCTBX commit	Mon, 18 Nov 2019 16:14:20 -0700	107 lines
[git/cctbx_project] master: Add reference (7fbcefb377)	CCTBX commit	Mon, 18 Nov 2019 15:29:53 -0700	102 lines
[git/cctbx_project] master: Add functions that check if git lfs pointers are loaded (da69b006e4)	CCTBX commit	Mon, 18 Nov 2019 14:29:36 -0800	131 lines
[git/cctbx_project] master: towards reinstating volatile variables if browser accidentally disconnects, toying with shapeComp.autoView() and set_volatile_params() (a3c3b759ec)	CCTBX commit	Mon, 18 Nov 2019 19:39:27 +0000	683 lines
[git/dxtbx] master: allow loading experiment lists from PEP-519 paths (476fb84)	DXTBX commit	Mon, 18 Nov 2019 11:52:58 +0000	113 lines
[git/dxtbx] master: Add DLS VMXi EIGER 1 4M to known_backwards list (#119) (b0f9608)	DXTBX commit	Mon, 18 Nov 2019 11:07:31 +0000	133 lines
[git/dxtbx] master: Minorly tidy experiment_list.py docstrings (cdbdb64)	DXTBX commit	Mon, 18 Nov 2019 09:43:00 +0000	607 lines
[git/cctbx_project] master: Allow passing sharpened map coeffs (5bb536f11b)	CCTBX commit	Sun, 17 Nov 2019 07:56:27 -0800	107 lines
[git/cctbx_project] master: IOTA monitor mode (#412) (7c2dd1b6bb)	CCTBX commit	Fri, 15 Nov 2019 17:03:52 -0800	438 lines
[git/cctbx_project] master: dxtbx.format.Registry.Registry.find is deprecated (4a56e34640)	CCTBX commit	Fri, 15 Nov 2019 15:18:11 -0800	445 lines
[git/dxtbx] master: Bugfix (ba5c418)	DXTBX commit	Fri, 15 Nov 2019 15:03:46 -0800	92 lines
Jenkins 5b cctbx MacOS build 4415 Fixed	DLS Jenkins	Fri, 15 Nov 2019 19:16:53 +0000	43 lines
[git/cctbx_project] master: towards reinstating volatile variables if browser accidentally disconnects (764d9eaf75)	CCTBX commit	Fri, 15 Nov 2019 18:56:42 +0000	712 lines
[git/cctbx_project] master: Fix deprecation warnings (5d24f3133b)	CCTBX commit	Fri, 15 Nov 2019 10:36:12 -0800	1400 lines
Jenkins 5b cctbx MacOS build 4414 Unstable	DLS Jenkins	Fri, 15 Nov 2019 18:11:18 +0000	94 lines
[git/cctbx_project] master: CI: bump Xcode 11.1 to 11.2.1 (cc71187f88)	CCTBX commit	Fri, 15 Nov 2019 09:26:47 -0800	94 lines
[git/cctbx_project] master: Enable Python 3.7 builds on Windows (8f85ae70e2)	CCTBX commit	Thu, 14 Nov 2019 21:05:56 -0800	124 lines
[git/cctbx_project] master: once more into the bench (80e8b2628f)	CCTBX commit	Thu, 14 Nov 2019 16:11:50 -0800	84 lines
[git/cctbx_project] master: more cleanerer (abc32081f8)	CCTBX commit	Thu, 14 Nov 2019 16:10:36 -0800	206 lines
[git/cctbx_project] master: Caoimhe (5ad1032fe3)	CCTBX commit	Thu, 14 Nov 2019 14:45:56 -0800	204 lines
[git/cctbx_project] master: better testing (c47597f19b)	CCTBX commit	Thu, 14 Nov 2019 14:38:54 -0800	112 lines
[git/cctbx_project] master: moving FES to mcl (53a7354c70)	CCTBX commit	Thu, 14 Nov 2019 14:38:54 -0800	362 lines
[git/cctbx_project] master: tidy and more robust code (a6cda64221)	CCTBX commit	Thu, 14 Nov 2019 14:38:54 -0800	261 lines
[git/cctbx_project] master: added Fe-S test (93bb8fcc9c)	CCTBX commit	Thu, 14 Nov 2019 14:38:54 -0800	956 lines
[git/cctbx_project] master: added comment (14ea1c1ef6)	CCTBX commit	Thu, 14 Nov 2019 14:38:54 -0800	86 lines
[git/cctbx_project] master: tidy and consolidation of code and lookup (bc3faf682e)	CCTBX commit	Thu, 14 Nov 2019 14:38:54 -0800	422 lines
[git/cctbx_project] master: changes to include Zn-Cys-His coordination (3729c8f09f)	CCTBX commit	Thu, 14 Nov 2019 14:38:54 -0800	936 lines
[git/cctbx_project] master: works for SF4, F3S, FES (f3fb252961)	CCTBX commit	Thu, 14 Nov 2019 14:38:54 -0800	249 lines
[git/cctbx_project] master: tidy and comment out LINK stuff (65e8dd0d56)	CCTBX commit	Thu, 14 Nov 2019 14:38:54 -0800	228 lines
[git/cctbx_project] master: even closer to adding FES (5ea3e28ddb)	CCTBX commit	Thu, 14 Nov 2019 14:38:54 -0800	376 lines
[git/cctbx_project] master: more robust lookup of metal library (d10a802cd5)	CCTBX commit	Thu, 14 Nov 2019 14:38:54 -0800	129 lines
[git/cctbx_project] master: fine tuning tests (940b5f1ad6)	CCTBX commit	Thu, 14 Nov 2019 14:38:54 -0800	168 lines
[git/cctbx_project] master: small change to put Zn coordination in the correct origin id (9a4277da4d)	CCTBX commit	Thu, 14 Nov 2019 14:38:54 -0800	125 lines
[git/cctbx_project] master: corner case fixes from t96 (1ec02c329c)	CCTBX commit	Thu, 14 Nov 2019 14:38:54 -0800	151 lines
[git/cctbx_project] master: do ALL metals (67724fa5e6)	CCTBX commit	Thu, 14 Nov 2019 14:38:54 -0800	466 lines
[git/cctbx_project] master: For tabulating Rfree values submit list of bools and NaN values for tabulate_miller_array() rather than a list of pure bools since flex.bool cannot be extended with NaNs. Tidy up SupersetMillerArrays() (4964bd06dc)	CCTBX commit	Thu, 14 Nov 2019 18:38:40 +0000	709 lines
[git/cctbx_project] master: Towards more robust messaging between NGL_HKLViewer() and HKLViewFrame() (dfec96e3de)	CCTBX commit	Thu, 14 Nov 2019 18:38:40 +0000	963 lines
[git/dxtbx] master: Add test for extend method of ExperimentList (0a57ace)	DXTBX commit	Thu, 14 Nov 2019 17:38:00 +0000	106 lines
[git/dxtbx] master: Avoid overextending oneself (72f3bfd)	DXTBX commit	Thu, 14 Nov 2019 17:16:50 +0000	98 lines
[git/cctbx_project] master: CI: add base Windows build (4c0a378d21)	CCTBX commit	Wed, 13 Nov 2019 23:54:32 -0800	319 lines
[git/dxtbx] master: Fix deprecation warnings (ad64b3a)	DXTBX commit	Wed, 13 Nov 2019 12:24:17 +0000	161 lines
[git/dxtbx] master: fix deprecation warning (b0b810d)	DXTBX commit	Wed, 13 Nov 2019 12:10:32 +0000	113 lines
[git/dxtbx] master: Remove deprecated redirect dxtbx.* -> dxtbx.ext.* (71950f1)	DXTBX commit	Wed, 13 Nov 2019 09:13:11 +0000	363 lines
Jenkins 5b cctbx MacOS build 4404 Fixed	DLS Jenkins	Wed, 13 Nov 2019 05:08:10 +0000	43 lines
[git/cctbx_project] master: a fix to map estimator (4876907f7c)	CCTBX commit	Tue, 12 Nov 2019 16:50:43 -0800	211 lines
Jenkins 5b cctbx MacOS build 4403 Unstable	DLS Jenkins	Tue, 12 Nov 2019 21:24:57 +0000	102 lines
[git/cctbx_project] master: bootstrap: use full path for Windows (173ecd9bf5)	CCTBX commit	Tue, 12 Nov 2019 10:36:14 -0800	113 lines
[git/dxtbx] master: export/annotate names so that LGTM is satisified (90b8caf)	DXTBX commit	Tue, 12 Nov 2019 11:43:15 +0000	133 lines
[git/dxtbx] master: Add missing equality function (cc9b32a)	DXTBX commit	Tue, 12 Nov 2019 11:33:04 +0000	134 lines
[git/dxtbx] master: address lgtm warnings (e42e772)	DXTBX commit	Tue, 12 Nov 2019 11:26:45 +0000	254 lines
[git/dxtbx] master: Convert class to function (3d3c6db)	DXTBX commit	Tue, 12 Nov 2019 11:16:22 +0000	498 lines
Jenkins 5b cctbx MacOS build 4401 Fixed	DLS Jenkins	Tue, 12 Nov 2019 05:31:09 +0000	43 lines
Jenkins 5b cctbx MacOS build 4400 Unstable	DLS Jenkins	Mon, 11 Nov 2019 19:47:40 +0000	48 lines
[git/cctbx_project] master: bug fixes when making supersets of all miller arrays. (2c12a84801)	CCTBX commit	Mon, 11 Nov 2019 18:54:05 +0000	761 lines
[git/dxtbx] master: Temporary workaround of two broken modules (41fefbb)	DXTBX commit	Mon, 11 Nov 2019 09:20:45 +0000	160 lines
[git/dxtbx] master: Clean clutter (88a9a9f)	DXTBX commit	Sun, 10 Nov 2019 05:10:54 +0000	296 lines
[git/dxtbx] master: saturation increases with square of binning (a1276fe)	DXTBX commit	Sat, 9 Nov 2019 21:43:18 +0000	120 lines
[git/dxtbx] master: Correct comment. (bf8ed61)	DXTBX commit	Sat, 9 Nov 2019 17:09:16 +0000	91 lines
[git/dxtbx] master: Gain and trusted range for Ceta (0332668)	DXTBX commit	Sat, 9 Nov 2019 16:54:20 +0000	127 lines
[git/cctbx_project] master: Rama-Z: more checks (14ae5b575b)	CCTBX commit	Fri, 8 Nov 2019 16:52:31 -0800	105 lines
[git/cctbx_project] master: turn function into class to return more results (ea460379a5)	CCTBX commit	Fri, 8 Nov 2019 13:32:46 -0800	427 lines
[git/cctbx_project] master: adding copySelection method to table (f79bb515cc)	CCTBX commit	Fri, 8 Nov 2019 20:18:07 +0000	434 lines
[git/cctbx_project] master: Bugfix for merging stats tab and active datasets (9fb957e161)	CCTBX commit	Fri, 8 Nov 2019 18:41:17 +0100	100 lines
[git/cctbx_project] master: cxi.mpi_submit updates for xfel gui (7c4abe16c5)	CCTBX commit	Fri, 8 Nov 2019 09:19:33 -0800	450 lines
[git/cctbx_project] master: Finish hooking up merging stats (6cf51f692b)	CCTBX commit	Fri, 8 Nov 2019 09:19:33 -0800	1322 lines
[git/cctbx_project] master: Hook up final merging step (1a02e398d6)	CCTBX commit	Fri, 8 Nov 2019 09:19:33 -0800	1280 lines
[git/cctbx_project] master: Improved job monitor using more data from new job fields (6086105d9a)	CCTBX commit	Fri, 8 Nov 2019 09:19:33 -0800	793 lines
[git/cctbx_project] master: Hook up job submission for the scaling/postrefinement task type (XFEL GUI) (a4a0733227)	CCTBX commit	Fri, 8 Nov 2019 09:19:33 -0800	1132 lines
[git/cctbx_project] master: Add parameters raw and output_file (33a031cd9e)	CCTBX commit	Fri, 8 Nov 2019 09:19:33 -0800	428 lines
[git/cctbx_project] master: Add slurm support to xfel gui (dbabdb6c7b)	CCTBX commit	Fri, 8 Nov 2019 09:19:33 -0800	556 lines
[git/cctbx_project] master: Add backwards compatibility with v4 of mysql schema (b0e951141b)	CCTBX commit	Fri, 8 Nov 2019 09:19:33 -0800	214 lines
[git/cctbx_project] master: cctbx.xfel GUI, new feature: datasets (schema and initial GUI work) (8f8982b475)	CCTBX commit	Fri, 8 Nov 2019 09:19:33 -0800	1842 lines
[git/cctbx_project] master: Rename master scope to phil scope (781312b086)	CCTBX commit	Fri, 8 Nov 2019 09:19:33 -0800	207 lines
[git/cctbx_project] master: Updates for cctbx.xfel.stripe_experiment (7f6fc0cdc2)	CCTBX commit	Fri, 8 Nov 2019 09:19:33 -0800	364 lines
[git/cctbx_project] master: Cummulative updates for XFEL GUI (361f13d36d)	CCTBX commit	Fri, 8 Nov 2019 09:19:33 -0800	995 lines
[git/cctbx_project] master: Add dataset and task objects for xfel gui (2c87cd52d9)	CCTBX commit	Fri, 8 Nov 2019 09:19:33 -0800	398 lines
[git/cctbx_project] master: bugfix for local processing (99f51bc5a1)	CCTBX commit	Fri, 8 Nov 2019 09:19:33 -0800	134 lines
[git/cctbx_project] master: Check point commit for dataset workflow in xfel gui (1185e4831b)	CCTBX commit	Fri, 8 Nov 2019 09:19:33 -0800	121 lines
[git/cctbx_project] master: HTCondor support for the xfel gui (afecce9ce6)	CCTBX commit	Fri, 8 Nov 2019 09:19:33 -0800	1429 lines
[git/dxtbx] master: 'Nother bugfix for floats (f5829c7)	DXTBX commit	Fri, 8 Nov 2019 18:09:09 +0100	151 lines
[git/cctbx_project] master: bugfixes to UI (#411) (08c1f09c70)	CCTBX commit	Fri, 8 Nov 2019 08:50:19 -0800	489 lines
[git/cctbx_project] master: sorting table by selecting column from a combobox instead of double clicking (e6492ef557)	CCTBX commit	Fri, 8 Nov 2019 15:07:35 +0000	341 lines
[git/dxtbx] master: fix DeprecationWarning (a17dd2c)	DXTBX commit	Fri, 8 Nov 2019 08:05:46 +0000	96 lines
[git/cctbx_project] master: Put back n_bins=None to default to 100 reflections per bin...FSC curves quite different with n_bins=500 and do not make sense (fb28fa294a)	CCTBX commit	Thu, 7 Nov 2019 18:57:10 -0800	101 lines
[git/cctbx_project] master: Bigger molecule - more stable test. (0b7a65c7c7)	CCTBX commit	Thu, 7 Nov 2019 15:51:21 -0800	164 lines
[git/cctbx_project] master: Sorting large millerarraytable with double clicks requires setting selection mode to QAbstractItemView.NoSelection (c1f96b2543)	CCTBX commit	Thu, 7 Nov 2019 19:01:47 +0000	661 lines
Jenkins 5a cctbx Tests build 9280 Fixed	DLS Jenkins	Thu, 7 Nov 2019 18:30:42 +0000	43 lines
[git/dxtbx] master: Bugfix (0ad03cd)	DXTBX commit	Thu, 7 Nov 2019 09:41:56 -0800	89 lines
Jenkins 5a cctbx Tests build 9279 Unstable	DLS Jenkins	Thu, 7 Nov 2019 17:30:56 +0000	807 lines
[git/dxtbx] master: Add double version of dataset_as_flex_int to allow reading NeXus data in saved with double precision (be9e558)	DXTBX commit	Thu, 7 Nov 2019 09:05:35 -0800	341 lines
[git/dxtbx] master: Add dataset_as_flex_float. Needed concurrent addition of float types for ImageBuffer/Image (3b3dcb9)	DXTBX commit	Thu, 7 Nov 2019 09:05:35 -0800	540 lines
[git/cctbx_project] master: clean clutter (4417fc1c5a)	CCTBX commit	Wed, 6 Nov 2019 19:49:42 -0800	62 lines
[git/cctbx_project] master: Allow zero_outside_original_map in map_box so that the new box will not be wrapped if specified (c781376971)	CCTBX commit	Wed, 6 Nov 2019 18:44:10 -0800	702 lines
Jenkins 5a cctbx Tests build 9275 Fixed	DLS Jenkins	Thu, 7 Nov 2019 01:01:13 +0000	41 lines
[git/cctbx_project] master: fix syntax error (af6ffda072)	CCTBX commit	Wed, 6 Nov 2019 22:35:24 +0000	109 lines
[git/cctbx_project] master: Merge branch 'master' of github.com:cctbx/cctbx_project (7608c64e64)	CCTBX commit	Wed, 6 Nov 2019 18:57:40 +0000	64 lines
[git/cctbx_project] master: Towards sorting columns with a QTableView (c2187d0715)	CCTBX commit	Wed, 6 Nov 2019 18:57:23 +0000	432 lines
[git/cctbx_project] master: conda: check for python.app in sys.prefix (b8efc756e6)	CCTBX commit	Tue, 5 Nov 2019 23:25:55 -0800	100 lines
[git/cctbx_project] master: Replacing QTableWidget with QTableView for speed improvements for millerarraytable (0afba30d4a)	CCTBX commit	Tue, 5 Nov 2019 20:20:10 +0000	600 lines
[git/cctbx_project] master: skip if no data (47c5c4dde3)	CCTBX commit	Tue, 5 Nov 2019 11:00:05 -0800	86 lines
[git/cctbx_project] master: Fix bounds for upper_bounds and fix bug in getting bounds from low-res mask (75718ebc8b)	CCTBX commit	Tue, 5 Nov 2019 10:48:16 -0800	368 lines
Jenkins 5b cctbx MacOS build 4376 Fixed	DLS Jenkins	Tue, 5 Nov 2019 17:18:21 +0000	43 lines
Jenkins 5b cctbx MacOS build 4375 Unstable	DLS Jenkins	Tue, 5 Nov 2019 15:57:13 +0000	60 lines
[git/cctbx_project] master: Fix limit on upper_bound if restrict_map_size=True (b118444d64)	CCTBX commit	Tue, 5 Nov 2019 07:54:47 -0800	98 lines
[git/cctbx_project] master: remove wrapping and just use restrict_map_size as already there (696f8e7a9e)	CCTBX commit	Tue, 5 Nov 2019 08:13:23 -0700	186 lines
Jenkins 5b cctbx MacOS build 4374 Fixed	DLS Jenkins	Tue, 5 Nov 2019 05:20:36 +0000	43 lines
[git/cctbx_project] master: Make wrapping default in extract_box_around_model_and_map and call it from map_box as wrapping=False (3f14e9e8e2)	CCTBX commit	Mon, 4 Nov 2019 19:30:28 -0800	204 lines
[git/cctbx_project] master: allow direct calculation of matching contour levels (ee6456e088)	CCTBX commit	Mon, 4 Nov 2019 20:16:15 -0700	227 lines
Jenkins 5b cctbx MacOS build 4373 Unstable	DLS Jenkins	Mon, 4 Nov 2019 22:39:04 +0000	64 lines
[git/cctbx_project] master: Rama-Z: introducing accuracy. (e731886a76)	CCTBX commit	Mon, 4 Nov 2019 14:11:07 -0800	326 lines
[git/dxtbx] master: dxtbx.radial_average: add reference_geometry and a better axis for the resolution plot option (e4c0d4e)	DXTBX commit	Mon, 4 Nov 2019 22:26:03 +0100	240 lines
Jenkins 5b cctbx MacOS build 4372 Fixed	DLS Jenkins	Mon, 4 Nov 2019 19:50:14 +0000	43 lines
[git/cctbx_project] master: gui updates, also allow sorting table according to phases, amplitudes or sigmas (e0249de5ad)	CCTBX commit	Mon, 4 Nov 2019 18:40:14 +0000	838 lines
Jenkins 5b cctbx MacOS build 4371 Unstable	DLS Jenkins	Mon, 4 Nov 2019 18:18:05 +0000	35 lines
[git/cctbx_project] master: Fix warning (bc6d5465ca)	CCTBX commit	Mon, 4 Nov 2019 09:16:57 -0800	158 lines
Jenkins 5b cctbx MacOS build 4370 Fixed	DLS Jenkins	Mon, 4 Nov 2019 13:09:29 +0000	43 lines
[git/dxtbx] master: Clean clutter (2a1ea42)	DXTBX commit	Mon, 4 Nov 2019 11:41:28 +0000	309 lines
[git/cctbx_project] master: catch case where model is outside box (d6b81b1fc4)	CCTBX commit	Sun, 3 Nov 2019 19:30:23 -0800	110 lines
[git/cctbx_project] master: Displaying more tabulated data when right-clicking more selected data sets (c46d419f0f)	CCTBX commit	Mon, 4 Nov 2019 02:11:45 +0000	907 lines
[git/cctbx_project] master: CI: do all builds for pull requests (8584deba4f)	CCTBX commit	Sat, 2 Nov 2019 15:43:01 -0700	164 lines
[git/cctbx_project] master: test for cis C-N-CA needs to be run (9f305753f4)	CCTBX commit	Fri, 1 Nov 2019 16:26:32 -0700	85 lines
[git/cctbx_project] master: Need to add elements to this. (d8f63cb7b0)	CCTBX commit	Fri, 1 Nov 2019 16:24:48 -0700	93 lines
[git/cctbx_project] master: Clarification (fd25fc0f22)	CCTBX commit	Fri, 1 Nov 2019 16:24:48 -0700	90 lines
[git/cctbx_project] master: flag to use 127 for cis C-N-CA angle (52c676e34e)	CCTBX commit	Fri, 1 Nov 2019 15:59:20 -0700	755 lines
Jenkins 5b cctbx MacOS build 4369 Failure	DLS Jenkins	Fri, 1 Nov 2019 16:11:20 +0000	22 lines
[git/cctbx_project] master: double click for sorting miller array table (2818a1deda)	CCTBX commit	Fri, 1 Nov 2019 15:40:54 +0000	387 lines

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