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[git/cctbx_project] master: use log (1ae499558)
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Fri, 28 Feb 2020 16:58:28 -0800 |
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[git/cctbx_project] master: utility function (ab304eea6)
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[git/cctbx_project] master: bugfix: don't try to update oldfield if it is not used (a369edf64)
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Fri, 28 Feb 2020 16:50:51 -0800 |
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[git/cctbx_project] master: Marking code (0ccd76e2a)
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Fri, 28 Feb 2020 14:43:22 -0800 |
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[git/cctbx_project] master: update for 1.18 part II (c700de1ae)
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Fri, 28 Feb 2020 14:24:58 -0800 |
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[git/cctbx_project] master: rama scope fix (471384e79)
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Fri, 28 Feb 2020 13:56:57 -0800 |
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[git/cctbx_project] master: CI: temporarily switch back to 10.13 for Xcode 9.4.1 (92baabd49)
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Fri, 28 Feb 2020 13:21:56 -0800 |
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[git/cctbx_project] master: Update model to use new Rama scope (20486e593)
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Fri, 28 Feb 2020 11:54:02 -0800 |
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[git/cctbx_project] master: Remove redundant None (ebf4910eb)
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[git/dxtbx] master: Sort imports missed by automatic hooks (38acecb)
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Fri, 28 Feb 2020 17:44:23 +0000 |
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[git/cctbx_project] master: Fix show_env for python3 (03763b257)
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[git/cctbx_project] master: Assign a default space-group list index to avoid recomputing cached scenes (5f1daeb5b)
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Fri, 28 Feb 2020 16:28:26 +0000 |
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[git/dxtbx] master: allow pathlike objects in .from_file() methods (50d3782)
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Fri, 28 Feb 2020 11:01:52 +0000 |
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[git/cctbx_project] master: mmCIF: NCS speedup (9046bdde2)
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[git/cctbx_project] master: Previous version would break one test out of t96 for unknown to me reasons (ef7e68b92)
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Thu, 27 Feb 2020 12:55:10 -0800 |
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[git/cctbx_project] master: Switch phenix.pdbtools to use program template. This uncovers a bug (crystal symmetry and model in data manager); Billy and Oleg are informed. Also, this is likely to break PDBTools GUI. Finally, mmtbx/regression/tst_pdbtools.py fails currently: will fix it once cs and model issue is fixed in data manager. (9df16cd4d)
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Thu, 27 Feb 2020 12:55:10 -0800 |
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[git/cctbx_project] master: Cleanup imports inside functions (223a07884)
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Thu, 27 Feb 2020 11:28:16 -0800 |
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[git/cctbx_project] master: mmCIF: Shortcut for NCS output to avoid rather slow general part. (3624dd58d)
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Thu, 27 Feb 2020 10:55:18 -0800 |
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[git/cctbx_project] master: Better error message (a62f1be84)
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Thu, 27 Feb 2020 10:37:11 -0800 |
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[git/cctbx_project] master: Merge remote-tracking branch 'remotes/origin/NGL_HKLviewer2' (d22b9261f)
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[git/cctbx_project] master: If browser accidentally disconnects from its websocket reopen the webpage again as a workaround (4574894b1)
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Thu, 27 Feb 2020 17:03:51 +0000 |
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[git/cctbx_project] master: 2to3 more wrappers for cbf handling and unicode change (b85dfccdc)
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Thu, 27 Feb 2020 08:12:04 -0800 |
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[git/cctbx_project] master: Consolidate cbf wrappers. Use CBF_PACKED instead of CBF_CANONICAL (0fca17f75)
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Thu, 27 Feb 2020 08:12:04 -0800 |
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[git/cctbx_project] master: updata psana2 detector interface (eaf13a614)
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Thu, 27 Feb 2020 08:12:04 -0800 |
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[git/cctbx_project] master: Unicode fix for pickling (de11196d0)
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[git/cctbx_project] master: Add cbf wrapper methods: find_column and find_row. (f45a7f251)
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[git/cctbx_project] master: Back to CBF_PACKED. CBF_CANONICAL having issues in py3/psana2 (4b07559bc)
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Thu, 27 Feb 2020 08:12:04 -0800 |
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[git/cctbx_project] master: Psana2 api change (6964f405b)
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[git/cctbx_project] master: First attempt to use psana2 interface. Fix some py2/3 issues. (d8b0f0b65)
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Thu, 27 Feb 2020 08:12:04 -0800 |
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[git/cctbx_project] master: Cummulative py2/py3 fixes (00b6a10a2)
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Thu, 27 Feb 2020 08:12:04 -0800 |
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[git/cctbx_project] master: Add analogue for PDB and tidy up the name (f69b0289e)
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Wed, 26 Feb 2020 15:02:02 -0800 |
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[git/cctbx_project] master: Use common set of parameters (429ea7857)
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Wed, 26 Feb 2020 15:02:02 -0800 |
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[git/cctbx_project] master: CI: stop builds on deprecated macOS 10.13 image (8d329b216)
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Wed, 26 Feb 2020 10:53:26 -0800 |
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[git/cctbx_project] master: Additional test (b9fd5dbe1)
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[git/cctbx_project] master: bug fix: don't use phil parameters as variables and assign values to them only in the GUI (e94963803)
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Wed, 26 Feb 2020 17:49:10 +0000 |
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[git/cctbx_project] master: CI: update platforms (ddafe5655)
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Tue, 25 Feb 2020 17:01:21 -0800 |
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[git/cctbx_project] master: special case for amber (c004d50df)
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Tue, 25 Feb 2020 12:12:33 -0800 |
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[git/cctbx_project] master: dumb error fixed (cdbd23fae)
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Tue, 25 Feb 2020 11:32:32 -0800 |
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[git/cctbx_project] master: remove unnecessary OptimisationWeights subclass and associated tests. (2323d93a2)
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Tue, 25 Feb 2020 11:13:45 -0800 |
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[git/cctbx_project] master: add penalty terms for the sum of amplitudes and squared sum of amplitudes (lasso and ridge regression terms -- for elastic net). update and expand tests. make white-space and indentation consistent. rename variables from residual -> atomic throughout for clarity. change variable names for clarity. (2b8f3c7fd)
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Tue, 25 Feb 2020 11:13:45 -0800 |
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[git/cctbx_project] master: simplify optimisation_weights class to use collections.namedtuple. update tests accordingly. (552a9d060)
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Tue, 25 Feb 2020 11:13:45 -0800 |
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[git/cctbx_project] master: Added Amber Library repo to Phenix distribution (d26694aa7)
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Tue, 25 Feb 2020 10:56:06 -0800 |
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[git/cctbx_project] master: Reorganising JavaScript code, in progress: rewriting ConstructReciprocalSpace() (79b3a171e)
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Tue, 25 Feb 2020 18:54:57 +0000 |
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[git/dxtbx] master: WIP for https://github.com/dials/dials/issues/1170 (cbe3770)
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Tue, 25 Feb 2020 15:39:32 +0000 |
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[git/cctbx_project] master: improve error message (19f1e1902)
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Tue, 25 Feb 2020 11:16:22 +0000 |
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[git/dxtbx] master: Decode string from NeXus header (99472e5)
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[git/cctbx_project] master: subprocess.check_output returns bytes; cast to str if Python3 (ef6d15487)
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Tue, 25 Feb 2020 10:28:07 +0000 |
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[git/cctbx_project] master: Ensure conda dependencies are met for DIALS installations (#438) (dc674b1c0)
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Tue, 25 Feb 2020 09:50:28 +0000 |
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[git/cctbx_project] master: in progress: rewriting ConstructReciprocalSpace() (014c441e5)
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Mon, 24 Feb 2020 18:52:48 +0000 |
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Jenkins 5a.1 cctbx Linux Python2 build 9620 Fixed
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DLS Jenkins |
Sun, 23 Feb 2020 01:33:39 +0000 |
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Jenkins 5a.1 cctbx Linux Python2 build 9619 Still Unstable
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Sat, 22 Feb 2020 02:37:58 +0000 |
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[git/dxtbx] master: No longer unsupported (db05ca4)
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Sat, 22 Feb 2020 02:17:43 +0000 |
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[git/dxtbx] master: Allow reference goniometer to be single or multi axis. (981cf6d)
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Sat, 22 Feb 2020 01:48:18 +0000 |
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[git/dxtbx] master: update test for CIF changes (b012aef)
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Fri, 21 Feb 2020 20:52:58 +0000 |
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Jenkins 5a.1 cctbx Linux Python2 build 9618 Unstable
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Fri, 21 Feb 2020 19:58:22 +0000 |
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[git/cctbx_project] master: In progress: rewriting ConstructReciprocalSpace() (63cccee5f)
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Fri, 21 Feb 2020 19:43:16 +0000 |
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[git/cctbx_project] master: bug fix, branching out (fdba299b7)
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Fri, 21 Feb 2020 19:31:51 +0000 |
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[git/dxtbx] master: Py3 fixes for cbf (122a8c9)
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Fri, 21 Feb 2020 09:58:10 -0800 |
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[git/dxtbx] master: Fix typo (17535af)
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Fri, 21 Feb 2020 14:11:55 +0000 |
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[git/dxtbx] master: Add goniometer.axis parameter. (#144) (1b09b54)
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Fri, 21 Feb 2020 14:10:17 +0000 |
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[git/dxtbx] master: Update beamline CIF definitions (fe00c0c)
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Fri, 21 Feb 2020 11:04:29 +0000 |
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[git/cctbx_project] master: Allowing has_phil_path() to take variable number of arguments. In progress: speed improvements to ConstructReciprocalSpace (9de7c9157)
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Thu, 20 Feb 2020 18:35:18 +0000 |
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Jenkins 5a.1 cctbx Linux Python2 build 9615 Fixed
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Thu, 20 Feb 2020 09:01:19 +0000 |
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Jenkins 5a.1 cctbx Linux Python2 build 9614 Failure
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DLS Jenkins |
Thu, 20 Feb 2020 01:13:17 +0000 |
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[git/cctbx_project] master: write QTWEBENGINE_CHROMIUM_FLAGS as settings and load them if present bug fixes: mitigate flickering on some PCs when resizing, no feedback when setting power_scale_spinBox (f71079b1e)
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Wed, 19 Feb 2020 18:06:20 +0000 |
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[git/cctbx_project] master: updated (81488ae53)
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Tue, 18 Feb 2020 15:43:14 -0800 |
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[git/cctbx_project] master: moved outliers calls to energy class (631bcecf9)
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Tue, 18 Feb 2020 15:36:12 -0800 |
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[git/cctbx_project] master: bug fixing, phil parameter typos (321eff884)
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Tue, 18 Feb 2020 17:36:33 +0000 |
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[git/cctbx_project] master: Fix typo (91160c8d0)
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Tue, 18 Feb 2020 06:24:28 +0000 |
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[git/cctbx_project] master: Avoiding initialization does not always save wall clock time. (bc3b8eb7d)
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Mon, 17 Feb 2020 20:12:41 -0800 |
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[git/cctbx_project] master: Save overhead time in the image viewer (8505850cb)
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Mon, 17 Feb 2020 20:09:33 -0800 |
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[git/cctbx_project] master: Mirror performance improvement of dials.image_viewer (e1e41863a)
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Mon, 17 Feb 2020 15:14:08 -0800 |
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[git/cctbx_project] master: bug fixes: don't using QWebEngineScript, instantiate QWebEngineView, then MyQWebEnginePage, then assign MyQWebEnginePage to QWebEngineView.page (5814acc93)
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Mon, 17 Feb 2020 19:48:00 +0000 |
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[git/cctbx_project] master: eliminating race condition when changing size of spheres (c62f56314)
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Mon, 17 Feb 2020 10:05:11 +0000 |
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[git/cctbx_project] master: Allow d_fsc_0.5 for half-maps (371465829)
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Sat, 15 Feb 2020 14:24:07 -0700 |
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[git/cctbx_project] master: fix (94e3e85dd)
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Fri, 14 Feb 2020 18:40:04 -0800 |
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[git/cctbx_project] master: typo (97f644941)
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Fri, 14 Feb 2020 17:47:14 -0800 |
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[git/cctbx_project] master: cleanup (487ec9727)
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Fri, 14 Feb 2020 17:41:42 -0800 |
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[git/cctbx_project] master: Rama ref: renaming new scope to avoid conflict with existing parameter. (5e10ebebb)
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Fri, 14 Feb 2020 17:41:42 -0800 |
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[git/cctbx_project] master: New rama scope: partially working except scope conflicts. (ea02ad32c)
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Fri, 14 Feb 2020 17:41:42 -0800 |
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[git/cctbx_project] master: restored color to cablam markup wheels (655078ba0)
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[git/cctbx_project] master: Fixes to avoid hanging at program exit. de-cluttered. (c11ff428c)
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Fri, 14 Feb 2020 18:45:25 +0000 |
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[git/dxtbx] master: Handle slicing when images start from 0 (#141) (af9b55e)
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Fri, 14 Feb 2020 12:35:24 +0000 |
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[git/cctbx_project] master: use QWebEnginePage.deleteLater() to avoid "Release of profile requested but WebEnginePage still not deleted. Expect troubles !" error message. Bug fix for HKLIN keyword. (fbbaaf707)
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Fri, 14 Feb 2020 12:28:11 +0000 |
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[git/cctbx_project] master: choose all-CA or all-main-chain for find_ss_from_ca (d5599519d)
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Thu, 13 Feb 2020 18:49:42 -0700 |
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[git/cctbx_project] master: Fix warning in t96. Uniform formatting. (fed4dcd17)
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[git/cctbx_project] master: in progress: fixing scale controls on GUI (71d39426c)
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[git/cctbx_project] master: Update the configuration of the LABELIT build. (c9652e867)
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[git/dxtbx] master: Satisfy black's line length limit (eb3aa2a)
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[git/dxtbx] master: On I19 data was always acquired with GDA (2ee2146)
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[git/cctbx_project] master: Fix dispatcher script discovery on MacOS+conda (08117293e)
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[git/cctbx_project] master: clean up after unsuccessful git attempts (2b463dcf7)
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[git/cctbx_project] master: fix package installation with existing directories (b4190c52a)
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[git/cctbx_project] master: Enable more element types in HySS (719a49691)
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Thu, 13 Feb 2020 14:26:25 +0900 |
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[git/cctbx_project] master: Bug fixes, add a method (b169618ab)
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Wed, 12 Feb 2020 19:15:17 -0800 |
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[git/cctbx_project] master: cc (1eaa24496)
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[git/cctbx_project] master: bugfix (8c48d41b2)
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Tue, 11 Feb 2020 16:45:21 -0800 |
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[git/cctbx_project] master: correct weight for CYS-FES-CYS (9fafa0764)
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Tue, 11 Feb 2020 11:45:46 -0800 |
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[git/cctbx_project] master: Correct display of Eiger2 inactive areas. (13a837150)
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Tue, 11 Feb 2020 10:24:29 -0800 |
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[git/dxtbx] master: Required for LABELIT support of Eiger2. Fixes #35. (7f6af3f)
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Tue, 11 Feb 2020 10:21:03 -0800 |
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[git/cctbx_project] master: bug fixes: report correct resolution limits; get all SS (a54222c62)
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Mon, 10 Feb 2020 17:21:58 -0800 |
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[git/cctbx_project] master: fixed indentation level on sort() (3888a2da4)
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[git/cctbx_project] master: de-cluttered (2150712ca)
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Mon, 10 Feb 2020 20:40:26 +0000 |
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[git/cctbx_project] master: Fixing logic on GUI for slicing reflections with clip plane or explicit slicing. (903dbde8e)
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Mon, 10 Feb 2020 17:17:51 +0000 |
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[git/dxtbx] master: Do not use Sorry in a library environment (#139) (6925c4b)
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Mon, 10 Feb 2020 09:45:45 +0000 |
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[git/cctbx_project] master: Restore as deleting breaks a lot (51c1f236c)
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Sun, 9 Feb 2020 17:38:24 -0800 |
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[git/cctbx_project] master: Allow opening file with hklin keyword argument on the commandline when launching GUI. Improve passing on keyword arguments to HKLViewFrame and hklview_3d (40297368f)
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Sun, 9 Feb 2020 19:31:21 +0000 |
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[git/dxtbx] master: Update black to 19.10b0 and clean clutter (e989373)
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Sun, 9 Feb 2020 05:11:02 +0000 |
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[git/cctbx_project] master: oops, cut more than wanted! (dbb1f146c)
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Fri, 7 Feb 2020 18:08:07 -0800 |
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[git/cctbx_project] master: Make sure good valid outliers do not move! (232e37f67)
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Fri, 7 Feb 2020 17:49:03 -0800 |
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[git/cctbx_project] master: Polder: update tests due to commit 565ab39cd9fbc222191526fe17ec5ca5cb692471 (e82f9145f)
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Fri, 7 Feb 2020 16:42:01 -0800 |
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[git/cctbx_project] master: moved to phenix (744f2119f)
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Fri, 7 Feb 2020 16:22:53 -0800 |
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[git/cctbx_project] master: # -*- coding: utf-8 -*- statement must be topmost to take effect (bdf4be82e)
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Fri, 7 Feb 2020 18:13:01 +0000 |
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[git/cctbx_project] master: MacOS: test if WebGL works in QWebEngineView and add fallback flags to QTWEBENGINE_CHROMIUM_FLAGS. (50278878a)
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Fri, 7 Feb 2020 17:25:22 +0000 |
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[git/dxtbx] master: For i03-365 - look for cutoff in meta file (#136) (dd241ff)
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Fri, 7 Feb 2020 13:46:16 +0000 |
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[git/cctbx_project] master: allow zero expand size (babd65f35)
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[git/cctbx_project] master: use interpolation in applying scale factors (8729ef744)
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[git/cctbx_project] master: Remove unused postrefinement file (9f737a307)
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[git/cctbx_project] master: Port rs2 postrefinement algorithm from cxi.merge to cctbx.xfel.merge (858a94b4f)
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Wed, 5 Feb 2020 14:29:36 -0800 |
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[git/cctbx_project] master: new 'wheel' kinemage markup for cablam (261d6cc20)
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[git/cctbx_project] master: work on visualization guidance for cablam outliers (d13923abe)
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[git/cctbx_project] master: missing braces for jedit (0b719e46e)
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[git/cctbx_project] master: cablam wheels markup now based on wedges instead of points (8f5f25cae)
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[git/cctbx_project] master: cablam wheels visibility: transparent and radius scaled down (4101d08be)
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[git/cctbx_project] master: rework cablam wheels markup (0d26812a0)
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[git/cctbx_project] master: misc code cleanup on cablam wheels markup (c50c40520)
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[git/cctbx_project] master: de-clutter, raise sorry if sorting against complex data (4f82d08a5)
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[git/cctbx_project] master: avoid circular dependencies with helpers.py (b79d64f1f)
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Wed, 5 Feb 2020 16:17:39 +0000 |
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[git/cctbx_project] master: Consolidate embarrassingly redundant code that is prone to diverge. Also, minor format fixups (too long lines). (4020d24c7)
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Tue, 4 Feb 2020 19:03:17 -0800 |
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[git/cctbx_project] master: NBO: use variable instead of value (b322be877)
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[git/cctbx_project] master: bugfix (07ae48210)
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[git/cctbx_project] master: de-clutter (ec5e3509c)
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Tue, 4 Feb 2020 21:08:02 +0000 |
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[git/cctbx_project] master: tidy, bug fix in spacegroup selection gui, allow selecting original unmerged spacegroup (4af0098c9)
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Tue, 4 Feb 2020 18:46:54 +0000 |
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[git/cctbx_project] master: Clean clutter (2ba497bc2)
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Tue, 4 Feb 2020 09:41:37 -0800 |
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Jenkins 5a.3 cctbx MacOS Python2 build 4578 Fixed
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DLS Jenkins |
Tue, 4 Feb 2020 02:05:59 +0000 |
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[git/cctbx_project] master: Rama-Z: get rid of scipy dependency. (415fdc8aa)
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CCTBX commit |
Mon, 3 Feb 2020 16:55:54 -0800 |
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[git/cctbx_project] master: Rama-Z: better description, thx @pafonine. (b787b1279)
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Mon, 3 Feb 2020 16:55:54 -0800 |
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[git/cctbx_project] master: Fix some corner cases in the 'counting_sorted' binning algorithm (#435) (565ab39cd)
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Mon, 3 Feb 2020 14:35:32 +0000 |
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[git/cctbx_project] master: missing comma (f55db25b5)
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Mon, 3 Feb 2020 13:26:45 +0000 |
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[git/cctbx_project] master: Add anomalous probability plot to iotbx.merging_statistics (fe5862aed)
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Mon, 3 Feb 2020 11:03:10 +0000 |
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[git/cctbx_project] master: Add anomalous probability plot to miller array (8c61ac49d)
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Mon, 3 Feb 2020 11:00:53 +0000 |
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[git/dxtbx] master: Don't crash when finding spots in files with index 0 (#135) (87f47b3)
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DXTBX commit |
Mon, 3 Feb 2020 09:25:49 +0000 |
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[git/dxtbx] master: Clean clutter (def2161)
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DXTBX commit |
Sun, 2 Feb 2020 05:10:57 +0000 |
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