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November 2022

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Subject	From	Date	Size
[git/dxtbx] main: Merge pull request #578 from jbeilstenedmands/lazy_restructure (50f85041)	DXTBX commit	Mon, 28 Nov 2022 14:18:58 +0000	86 lines
[git/cctbx_project] master: Add switch for determine_ordered_volume. Force sphere center to lie on a map grid point, for easier comparison of results from alternative docking spheres. Tidy up syntax of argparse, where the bool arguments wouldn't have worked. (f2ffa86d7b)	CCTBX commit	Mon, 28 Nov 2022 13:22:08 +0000	364 lines
[git/cctbx_project] master: Molprobity2 debug6 (#823) (7dd3832cf5)	CCTBX commit	Sun, 27 Nov 2022 11:56:18 -0500	2696 lines
[git/dxtbx] main: Fallback on legacy FormatNexus for Dectris filewriter images (#584) (5316861a)	DXTBX commit	Thu, 24 Nov 2022 17:15:05 +0000	135 lines
[git/dxtbx] main: FormatNXmxED (#583) (8f6dadd6)	DXTBX commit	Thu, 24 Nov 2022 17:08:40 +0000	275 lines
[git/cctbx_project] master: Function for group rounding with tests. (d8c9ae2bc7)	CCTBX commit	Wed, 23 Nov 2022 13:26:21 -0800	301 lines
[git/dxtbx] main: Exclude ED images from eBIC from being picked up by FormatNXmxDLS (#579) (1a6977fb)	DXTBX commit	Wed, 23 Nov 2022 13:34:53 +0000	129 lines
[git/cctbx_project] master: Make more stable, RCSB sometimes changes the order in the answer. (145c1f3e23)	CCTBX commit	Tue, 22 Nov 2022 15:37:46 -0800	122 lines
[git/cctbx_project] master: Remove extra log statement (f04b93b883)	CCTBX commit	Tue, 22 Nov 2022 10:15:35 -0800	100 lines
[git/cctbx_project] master: Bugfix: resolution wasn't used (d6e896c823)	CCTBX commit	Mon, 21 Nov 2022 15:07:53 -0800	104 lines
[git/cctbx_project] master: Change XFEL CI to use mamba (214f7d5630)	CCTBX commit	Mon, 21 Nov 2022 12:53:44 -0800	116 lines
[git/cctbx_project] master: this will fix a few more failures in t96 (912dbc5c79)	CCTBX commit	Sun, 20 Nov 2022 17:00:49 -0800	188 lines
[git/cctbx_project] master: This should fix plenty of t96 tests (12e22bbba4)	CCTBX commit	Sat, 19 Nov 2022 16:40:56 -0800	95 lines
[git/cctbx_project] master: massage the logic to make it actually do what's expected (7b9ccbcea8)	CCTBX commit	Fri, 18 Nov 2022 16:10:49 -0800	428 lines
[git/cctbx_project] master: Remove exp_id from cctbx.xfel.merge (#822) (ae3004fa6d)	CCTBX commit	Thu, 17 Nov 2022 14:30:23 -0800	2070 lines
[git/cctbx_project] master: allows some ranks to fail at predicting (aa4311272c)	CCTBX commit	Thu, 17 Nov 2022 11:14:26 -0800	141 lines
[git/cctbx_project] master: fixes broken integrate script when laue_mode=False (c21b401ef3)	CCTBX commit	Thu, 17 Nov 2022 10:32:54 -0800	133 lines
[git/cctbx_project] master: small bug fix (c18bdb87b1)	CCTBX commit	Thu, 17 Nov 2022 08:49:51 -0800	97 lines
[git/cctbx_project] master: Add button to start mysql server (#808) (857e574fcf)	CCTBX commit	Thu, 17 Nov 2022 08:35:17 -0800	1528 lines
[git/cctbx_project] master: update (5c58d51667)	CCTBX commit	Wed, 16 Nov 2022 14:25:01 -0800	88 lines
[git/cctbx_project] master: Caching and averaging bugfixes for LCLS (411d43ce98)	CCTBX commit	Wed, 16 Nov 2022 14:14:10 -0800	226 lines
[git/cctbx_project] master: libtbx: py_compile_all hides warnings if errors are ignored (65e96a3398)	CCTBX commit	Wed, 16 Nov 2022 12:12:17 -0800	94 lines
[git/cctbx_project] master: clean clutter (31b8a3d3dc)	CCTBX commit	Wed, 16 Nov 2022 11:44:45 -0800	118 lines
[git/cctbx_project] master: XFEL cosets: use logger instead of print (e3f60b34d9)	CCTBX commit	Wed, 16 Nov 2022 09:27:07 -0800	242 lines
[git/dxtbx] main: Rename newsfragments/XXX.misc to newsfragments/578.misc (745b979f)	DXTBX commit	Wed, 16 Nov 2022 16:30:09 +0000	94 lines
[git/dxtbx] main: Add news (b6e64bb5)	DXTBX commit	Wed, 16 Nov 2022 16:29:44 +0000	78 lines
[git/dxtbx] main: Allow lazyness of a class to be controlled with format_kwargs (d1edf74f)	DXTBX commit	Wed, 16 Nov 2022 15:53:08 +0000	394 lines
[git/cctbx_project] master: Removed clutter, unused statements, and PEP8 deviations (8ff4f1e5e2)	CCTBX commit	Tue, 15 Nov 2022 21:57:01 -0700	300 lines
[git/cctbx_project] master: evaluates total walltimes of individual runs (3ee9d6f542)	CCTBX commit	Tue, 15 Nov 2022 21:57:01 -0700	195 lines
[git/cctbx_project] master: Bugfixed deltas, prettified output (4a55ae7999)	CCTBX commit	Tue, 15 Nov 2022 21:57:01 -0700	139 lines
[git/cctbx_project] master: Improved performance of delta calculation, removed unused variables (3ebd3468e0)	CCTBX commit	Tue, 15 Nov 2022 21:57:01 -0700	163 lines
[git/cctbx_project] master: Re-added previously removed "unused" variables (9002bbb83a)	CCTBX commit	Tue, 15 Nov 2022 21:57:01 -0700	134 lines
[git/cctbx_project] master: Yield only two decimal places in print message (4ccad90a7a)	CCTBX commit	Tue, 15 Nov 2022 21:57:01 -0700	95 lines
[git/cctbx_project] master: Increase space reserved for integers (a879043093)	CCTBX commit	Tue, 15 Nov 2022 21:57:01 -0700	117 lines
[git/cctbx_project] master: CI: add some libraries to linux builds for GUI tests (64ecbb195a)	CCTBX commit	Tue, 15 Nov 2022 15:35:43 -0800	162 lines
[git/cctbx_project] master: CI: stop CentOS 6 builds (f0498cdc72)	CCTBX commit	Tue, 15 Nov 2022 11:00:20 -0800	141 lines
[git/cctbx_project] master: update C beta corrections for top2018 (611d048916)	CCTBX commit	Fri, 11 Nov 2022 10:59:05 -0800	78 lines
[git/cctbx_project] master: mmtbx: remove extra print (35216c00ea)	CCTBX commit	Fri, 11 Nov 2022 09:14:12 -0800	87 lines
[git/cctbx_project] master: cctbx: add __getstate_manages_dict__ for Python 3.11 (4ccdb45f1e)	CCTBX commit	Thu, 10 Nov 2022 14:07:17 -0800	93 lines
[git/cctbx_project] master: libtbx: update test for Python 3.11 (c1abc42da8)	CCTBX commit	Thu, 10 Nov 2022 13:44:14 -0800	114 lines
[git/cctbx_project] master: installed MOPAC and detailed saccharide (874a740378)	CCTBX commit	Thu, 10 Nov 2022 13:35:49 -0800	508 lines
[git/cctbx_project] master: xfel_db: reconnect if MySQL server goes away (22204d4541)	CCTBX commit	Thu, 10 Nov 2022 12:13:26 -0800	119 lines
[git/cctbx_project] master: Scipy scaling (#820) (022e1eb67e)	CCTBX commit	Thu, 10 Nov 2022 15:11:54 -0500	408 lines
[git/cctbx_project] master: add master tags for chiral markup in kinemage (84ee80b38c)	CCTBX commit	Thu, 10 Nov 2022 13:54:28 -0500	153 lines
[git/cctbx_project] master: xfel.detector_residuals: add parameter delta_scalar (74d31e8f4e)	CCTBX commit	Wed, 9 Nov 2022 17:15:29 -0800	405 lines
[git/cctbx_project] master: CI: add condition to publishing test artifacts (9a0540a5c9)	CCTBX commit	Wed, 9 Nov 2022 17:14:35 -0800	117 lines
[git/cctbx_project] master: CI: save tests directory regardless of success (2fcc037c7a)	CCTBX commit	Wed, 9 Nov 2022 13:04:20 -0800	117 lines
[git/cctbx_project] master: CI: publish tests directory as an artifact (f1448c2050)	CCTBX commit	Wed, 9 Nov 2022 02:01:57 -0800	321 lines
[git/cctbx_project] master: Added status TIMEOUT to possible cctbx.xfel job states (006e358f0b)	CCTBX commit	Tue, 8 Nov 2022 17:14:23 -0800	137 lines
[git/cctbx_project] master: XFEL: pin h5py due to a mamba mismatch (ab223bb8f3)	CCTBX commit	Tue, 8 Nov 2022 16:22:13 -0800	100 lines
[git/cctbx_project] master: wxtbx: fix DeprecationWarnings for PDB File Editor (1b7541b1eb)	CCTBX commit	Mon, 7 Nov 2022 17:46:57 -0800	194 lines
[git/dxtbx] main: Fix dxtbx.plot_detector_models for new versions of matplotlib (#574) (7494dc03)	DXTBX commit	Mon, 7 Nov 2022 22:23:37 +0000	120 lines
[git/cctbx_project] master: CI: updates (fcf3ee3b7f)	CCTBX commit	Mon, 7 Nov 2022 13:04:54 -0800	227 lines
[git/cctbx_project] master: fable: ensure consistent bytes usage in test (92928f7031)	CCTBX commit	Mon, 7 Nov 2022 13:04:54 -0800	175 lines
[git/cctbx_project] master: fable: hide deprecated declarations (db6bb4303f)	CCTBX commit	Mon, 7 Nov 2022 13:04:54 -0800	93 lines
[git/cctbx_project] master: Averagebutton (#817) (703cff0cb7)	CCTBX commit	Mon, 7 Nov 2022 09:58:49 -0800	1587 lines
[git/dxtbx] main: Avoid potential divide-by-zero warning in sanity check (#572) (587a2636)	DXTBX commit	Mon, 7 Nov 2022 11:02:33 +0000	185 lines
[git/cctbx_project] master: CI: bump Xcode 14 to 14.1 (026f65c4ec)	CCTBX commit	Sat, 5 Nov 2022 12:19:37 -0700	93 lines
[git/cctbx_project] master: de-clutter (b6e7745cd8)	CCTBX commit	Sat, 5 Nov 2022 18:17:11 +0100	61 lines
[git/cctbx_project] master: Better error handling for when failing to connect to a browser (38372da2dc)	CCTBX commit	Sat, 5 Nov 2022 18:00:32 +0100	139 lines
[git/cctbx_project] master: comment out test for HKLviewer (85cc5c20bc)	CCTBX commit	Sat, 5 Nov 2022 18:00:32 +0100	87 lines
[git/cctbx_project] master: UI bug fix when changing to use a different dataset for binning; don't use old scene_bin_thresholds values (c074bd9ef1)	CCTBX commit	Sat, 5 Nov 2022 18:00:32 +0100	244 lines
[git/cctbx_project] master: Don't erase output log file for debugging (cd186aee95)	CCTBX commit	Sat, 5 Nov 2022 18:00:31 +0100	147 lines
[git/cctbx_project] master: extend closingtime to 30 seconds to allow matplotlib being compiled (3ad35c0dca)	CCTBX commit	Sat, 5 Nov 2022 18:00:31 +0100	100 lines
[git/cctbx_project] master: tidy up (313011254e)	CCTBX commit	Sat, 5 Nov 2022 18:00:31 +0100	90 lines
[git/cctbx_project] master: Allow loading PHIL file on the command line to enact a specific view of reflections when regression testing. Allow saving stdout/stderr to file for later inspection in regression tests. A regression test for the Qt gui. (f05f99e10c)	CCTBX commit	Sat, 5 Nov 2022 18:00:31 +0100	724 lines
[git/cctbx_project] master: Bug fix: Use data file shipped with cctbx for regression test and not Phenix (a50ecbf390)	CCTBX commit	Sat, 5 Nov 2022 18:00:31 +0100	309 lines
[git/cctbx_project] master: de-clutter (eeb2e365a1)	CCTBX commit	Sat, 5 Nov 2022 18:00:30 +0100	115 lines
[git/cctbx_project] master: called HKLViewFrame.__exit__() too early (bd5368c031)	CCTBX commit	Sat, 5 Nov 2022 18:00:30 +0100	106 lines
[git/cctbx_project] master: Test first regression test for HKLviewer (b126e7fac9)	CCTBX commit	Sat, 5 Nov 2022 18:00:30 +0100	245 lines
[git/cctbx_project] master: More correct XFEL plot_uc_histogram (#818) (d2126bae8c)	CCTBX commit	Fri, 4 Nov 2022 16:54:21 -0700	916 lines
[git/cctbx_project] master: Possible fix for phenix.refine crash (01098646ab)	CCTBX commit	Fri, 4 Nov 2022 10:33:13 -0700	92 lines
[git/cctbx_project] master: Update cluster.visualize_orientations (7ce7dd2c04)	CCTBX commit	Thu, 3 Nov 2022 17:13:14 -0700	207 lines
[git/cctbx_project] master: Utitlity function to split a dxtbx detector model into subpanels. (d1f4731e7f)	CCTBX commit	Thu, 3 Nov 2022 15:39:55 -0700	314 lines
[git/cctbx_project] master: Clarify half and full maps (221d853a52)	CCTBX commit	Thu, 3 Nov 2022 12:42:16 -0600	93 lines
[git/cctbx_project] master: Diffbragg fhkl and save (#810) (b897318549)	CCTBX commit	Thu, 3 Nov 2022 12:24:16 -0500	721 lines
[git/dxtbx] main: Mpi image average2 (#571) (b18c59a8)	DXTBX commit	Thu, 3 Nov 2022 10:26:48 -0400	441 lines
[git/cctbx_project] master: Convenience function for scripting, update_from_philstr(). Bug fix for first time alignment of clip plane with perpendicular vector. (3516eb75bf)	CCTBX commit	Wed, 2 Nov 2022 18:49:10 +0100	396 lines
[git/dxtbx] main: Revert "Stage 1 remove datablock (#504)" (1d357467)	DXTBX commit	Wed, 2 Nov 2022 10:11:20 +0000	846 lines
[git/cctbx_project] master: iotbx: reorder arguments in tst_cli_parser.py (12411feb29)	CCTBX commit	Wed, 2 Nov 2022 03:05:31 -0700	95 lines
[git/cctbx_project] tag 'v2022.10' created	CCTBX commit	Wed, 2 Nov 2022 02:54:53 -0700	40 lines
[git/cctbx_project] master: iotbx: add CCTBXParser tests for label parsing (ee6f62f780)	CCTBX commit	Wed, 2 Nov 2022 02:54:53 -0700	275 lines
[git/cctbx_project] master: iotbx: combine label PHIL parameters in CCTBXParser (588bb24b45)	CCTBX commit	Wed, 2 Nov 2022 02:54:53 -0700	195 lines
[git/cctbx_project] master: Update CHANGELOG.rst for 2022.10 release (f490f78672)	CCTBX commit	Wed, 2 Nov 2022 02:54:53 -0700	106 lines
[git/dxtbx] main: Stage 1 remove datablock (#504) (3dba930b)	DXTBX commit	Wed, 2 Nov 2022 09:39:28 +0000	848 lines
[git/cctbx_project] master: Only skip BIOMT expansion if MTRIX was done. With test. (2664038b13)	CCTBX commit	Tue, 1 Nov 2022 16:01:42 -0700	624 lines
[git/cctbx_project] master: update python part of probe to account for updated output - proper gap in condensed option. Do not consider 'so' types for consistency. Updated and enhanced tests. (d0ec60d91c)	CCTBX commit	Tue, 1 Nov 2022 10:06:02 -0700	947 lines
[git/dxtbx] main: Clean Clutter (6e585fc5)	DXTBX commit	Tue, 1 Nov 2022 15:08:34 +0000	99 lines
[git/dxtbx] main: MNT: Post-release Changelog tweaks (7b70c3a2)	DXTBX commit	Tue, 1 Nov 2022 14:39:55 +0000	180 lines
[git/cctbx_project] master: Bug fixes: Allow binning unmerged datasets, UI fixes when user enters explicit bin thresholds, rectifying broken I/SigI preset button (b6b8e3bb27)	CCTBX commit	Tue, 1 Nov 2022 15:03:46 +0100	697 lines
[git/cctbx_project] master: Patched plot_obs_colored_by_deltapsi to prevent UnboundLocalError when running xfel.detector_residuals (30c047028e)	CCTBX commit	Mon, 31 Oct 2022 20:54:38 -0700	108 lines
[git/dxtbx] main: Bump version: 3.12.dev → 3.13.dev (6b7f10ff)	DXTBX commit	Mon, 31 Oct 2022 19:14:25 +0000	111 lines
[git/dxtbx] tag 'v3.12.0' created	DXTBX commit	Mon, 31 Oct 2022 19:14:25 +0000	40 lines
[git/dxtbx] main: dxtbx 3.12.0 Changelog (6beadf6b)	DXTBX commit	Mon, 31 Oct 2022 19:14:24 +0000	406 lines

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November 2022

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