JISCMail - CCTBX-COMMIT Archives

Email discussion lists for the UK Education and Research communities

Subscriber's Corner

Email Lists

CCTBX-COMMIT Archives

January 2023

View:

Show Author | Hide Author

		LISTSERV Archives
		CCTBX-COMMIT Home

Options

Subscribe or Unsubscribe

Get Password

Subject	From	Date	Size
[git/cctbx_project] master: XFEL GUI bugfix: better handle shared rungroups when counting cells (e0fe1893f7)	CCTBX commit	Tue, 31 Jan 2023 14:05:44 -0800	113 lines
[git/cctbx_project] master: bootstrap: update the _EXTRA variables for Phenix builders (f1fada8593)	CCTBX commit	Tue, 31 Jan 2023 11:39:42 -0800	123 lines
[git/cctbx_project] master: Add a decorator libtbx.mpi4py.mpi_abort_on_exception (#845) (3e6920dc52)	CCTBX commit	Tue, 31 Jan 2023 13:02:20 -0500	221 lines
[git/cctbx_project] master: iotbx: skip test on Python 2 (56bf54a96c)	CCTBX commit	Tue, 31 Jan 2023 08:25:02 -0800	100 lines
[git/cctbx_project] master: don't occasionally hang for 3 seconds (17a8cd906b)	CCTBX commit	Tue, 31 Jan 2023 12:42:34 +0000	306 lines
[git/cctbx_project] master: fixed missing planarity edits in .geo (dcdc608776)	CCTBX commit	Mon, 30 Jan 2023 16:56:23 -0800	98 lines
[git/cctbx_project] master: Fix broken link (8c02404e93)	CCTBX commit	Mon, 30 Jan 2023 15:57:59 -0800	99 lines
[git/cctbx_project] master: Enhanced test for pdb_input/cif_input API consistency. Now include parameters check. With appropriate fixes where needed. (53e089db15)	CCTBX commit	Mon, 30 Jan 2023 15:10:00 -0800	440 lines
[git/cctbx_project] master: Special case for absent numbers in Saenger class 16. Also moving imports on top. (f072887a81)	CCTBX commit	Mon, 30 Jan 2023 11:19:27 -0800	139 lines
[git/cctbx_project] master: Allow P or CA atoms and apply to all atoms in residue: (7b323d0470)	CCTBX commit	Mon, 30 Jan 2023 11:56:11 -0700	214 lines
[git/cctbx_project] master: Bug fix. Ensure PHIL parameter openfilename is "forgotten" after loading a file to allow us to reload the same file (f2916ffea5)	CCTBX commit	Mon, 30 Jan 2023 18:45:26 +0000	166 lines
[git/dxtbx] main: MNT: Update pre-commit packages (5ef3dfc1)	DXTBX commit	Mon, 30 Jan 2023 18:35:53 +0000	143 lines
[git/dxtbx] main: nexus: Fix case where uint wasn't coerced to int (#609) (5d69ee04)	DXTBX commit	Mon, 30 Jan 2023 18:18:28 +0000	181 lines
[git/dxtbx] main: Run CMake CI build/tests on Windows (#604) (82e928f3)	DXTBX commit	Mon, 30 Jan 2023 18:15:37 +0000	469 lines
[git/dxtbx] main: Flumpy: Prefer int instead of long when same size (#607) (210241a9)	DXTBX commit	Mon, 30 Jan 2023 17:43:40 +0000	463 lines
[git/cctbx_project] master: neutralize_scatterers happens automatically now in model.py (1eb519db95)	CCTBX commit	Fri, 27 Jan 2023 17:39:52 -0800	187 lines
[git/cctbx_project] master: clean clutter (586b6ba248)	CCTBX commit	Fri, 27 Jan 2023 15:59:13 -0700	61 lines
[git/cctbx_project] master: Add citations (a8da79587a)	CCTBX commit	Fri, 27 Jan 2023 14:56:23 -0700	175 lines
[git/cctbx_project] master: add msgpack-c to psana conda env (113f464e95)	CCTBX commit	Fri, 27 Jan 2023 10:17:33 -0800	85 lines
[git/cctbx_project] master: Update year in COPYRIGHT and LICENSE (38f0ac3c0c)	CCTBX commit	Fri, 27 Jan 2023 09:11:29 -0800	113 lines
[git/dxtbx] main: FormatNXmx tests: Close file before reopening (#608) (ec97f03e)	DXTBX commit	Fri, 27 Jan 2023 15:16:36 +0000	116 lines
[git/cctbx_project] master: conda: add environment selection for phenix_release builder (ad97d36791)	CCTBX commit	Thu, 26 Jan 2023 20:28:24 -0800	132 lines
[git/cctbx_project] master: bootstrap: clean up PhenixBuilder (36db4e2eec)	CCTBX commit	Thu, 26 Jan 2023 20:28:24 -0800	103 lines
[git/cctbx_project] master: update caption (2bfdb5212b)	CCTBX commit	Thu, 26 Jan 2023 15:48:46 -0700	94 lines
[git/cctbx_project] master: modify_cosym bugfix for user-defined twin axis (cfeb50e0cc)	CCTBX commit	Thu, 26 Jan 2023 14:28:03 -0800	109 lines
[git/cctbx_project] master: Clarify caption (6dd87b3c48)	CCTBX commit	Thu, 26 Jan 2023 13:02:46 -0700	94 lines
[git/cctbx_project] master: rename function to process_PHIL_parameters (164c7b12c2)	CCTBX commit	Thu, 26 Jan 2023 19:30:50 +0000	916 lines
[git/dxtbx] main's head updated: Bump version: 3.13.dev → 3.14.dev (49dcb920)	DXTBX commit	Thu, 26 Jan 2023 19:10:16 +0000	44 lines
[git/cctbx_project] master: small changes to HBond to easily have results output files naming options (f193015c73)	CCTBX commit	Thu, 26 Jan 2023 09:42:51 -0800	136 lines
[git/cctbx_project] master: added metal substition options (3dd2395552)	CCTBX commit	Thu, 26 Jan 2023 09:42:51 -0800	733 lines
[git/cctbx_project] master: better error printout (131c2dee3c)	CCTBX commit	Thu, 26 Jan 2023 09:42:51 -0800	101 lines
[git/cctbx_project] master: bootstrap: sync with buildbot (7769576506)	CCTBX commit	Thu, 26 Jan 2023 07:20:24 -0800	109 lines
[git/dxtbx] main: Bump version: 3.13.dev → 3.14.dev (49dcb920)	DXTBX commit	Thu, 26 Jan 2023 04:41:21 +0000	111 lines
[git/dxtbx] tag 'v3.13.0' created	DXTBX commit	Thu, 26 Jan 2023 04:41:20 +0000	40 lines
[git/cctbx_project] master: bootstrap: add phenix_release builder (af1c1aa534)	CCTBX commit	Wed, 25 Jan 2023 19:40:07 -0800	262 lines
[git/cctbx_project] master: "Subm ID" may hold multiple values, so don't treat it as integer column (38cd7159cf)	CCTBX commit	Wed, 25 Jan 2023 15:23:35 -0800	93 lines
[git/cctbx_project] master: Fix bug in ncs where helical symmetry could be interpreted backwards (85e2fd61c7)	CCTBX commit	Wed, 25 Jan 2023 11:39:24 -0700	867 lines
[git/cctbx_project] master: Use std::shared_ptr instead of boost equivalent (#837) (27582271c8)	CCTBX commit	Wed, 25 Jan 2023 14:52:22 +0000	110 lines
[git/dxtbx] main: Explicitly convert Image data types (#606) (c2706ed0)	DXTBX commit	Wed, 25 Jan 2023 13:51:48 +0000	153 lines
[git/cctbx_project] master: Search all job_title entries before giving up with None (e8bb8758d0)	CCTBX commit	Wed, 25 Jan 2023 05:45:16 -0700	98 lines
[git/cctbx_project] master: Reverting 9a87f4. This is needed to keep GRM to include geometry statistics into output model files. (5040f0fc41)	CCTBX commit	Tue, 24 Jan 2023 16:22:19 -0800	137 lines
[git/cctbx_project] master: Python 3 temp fixes (7b28cd5e7b)	CCTBX commit	Tue, 24 Jan 2023 15:06:11 -0700	141 lines
[git/dxtbx] main: Fix windows libtbx-build compilation for modern C++ (#605) (1b663fd5)	DXTBX commit	Tue, 24 Jan 2023 21:56:25 +0000	131 lines
[git/cctbx_project] master: Fix to allow the optional persistent columns to be retained during post refinement. (#831) (df185fd03e)	CCTBX commit	Tue, 24 Jan 2023 12:41:03 -0800	150 lines
[git/cctbx_project] master: speed up slice_table by only calling experiment_identifiers() once (7f14e001b0)	CCTBX commit	Tue, 24 Jan 2023 12:38:47 -0800	102 lines
[git/cctbx_project] master: Enable rounding of occupancies (1d697905b2)	CCTBX commit	Tue, 24 Jan 2023 09:23:34 -0800	107 lines
[git/cctbx_project] master: Allow calling r_free_flags_completion_simple.py from python (36adcb9b9a)	CCTBX commit	Mon, 23 Jan 2023 21:12:16 -0700	99 lines
[git/dxtbx] main: flumpy: Fix numpy deprecation warning in tests (#603) (97c27e87)	DXTBX commit	Mon, 23 Jan 2023 12:11:18 +0000	134 lines
[git/dxtbx] main: DLS-only regression data files: Check file directly (#602) (203f18a8)	DXTBX commit	Mon, 23 Jan 2023 10:46:17 +0000	359 lines
[git/cctbx_project] master: fix broken MergeData (d776c17cad)	CCTBX commit	Sun, 22 Jan 2023 19:22:11 +0000	156 lines
[git/cctbx_project] master: Catch case where all free flags are present (49230101b3)	CCTBX commit	Sun, 22 Jan 2023 09:39:58 -0700	141 lines
[git/cctbx_project] master: unicode does not exist in python 3 (1337c1b1d5)	CCTBX commit	Sun, 22 Jan 2023 07:02:06 -0700	105 lines
[git/cctbx_project] master: CI: skip failing test on macOS with -O0 (2baf4cee65)	CCTBX commit	Fri, 20 Jan 2023 18:56:24 -0800	134 lines
[git/cctbx_project] master: conda: update some installation targets (337abcc259)	CCTBX commit	Fri, 20 Jan 2023 12:59:09 -0800	206 lines
[git/cctbx_project] master: Catch missing log in map_manager and map_model_manager setstate (b15a3dc946)	CCTBX commit	Fri, 20 Jan 2023 11:10:55 -0700	297 lines
[git/dxtbx] main: Use standard C++11 features instead of boost equivalents (#599) (f3d40def)	DXTBX commit	Thu, 12 Jan 2023 15:27:32 +0000	166 lines
[git/dxtbx] main: cbf_writer: cctbx function expects `trusted_range` (#601) (dccbdb66)	DXTBX commit	Thu, 12 Jan 2023 15:07:35 +0000	165 lines
[git/dxtbx] main: Update DLS-only smargon masking test dataset (#600) (14cd2dcf)	DXTBX commit	Thu, 12 Jan 2023 14:52:18 +0000	195 lines
[git/cctbx_project] master: cosmetics: wrap labels for radiobuttons (2648ba31a7)	CCTBX commit	Thu, 12 Jan 2023 00:06:25 +0000	205 lines
[git/cctbx_project] master: Failing test for fixing (6605b1b64a)	CCTBX commit	Wed, 11 Jan 2023 15:56:00 -0800	116 lines
[git/cctbx_project] master: Fix typo (fd525dee36)	CCTBX commit	Wed, 11 Jan 2023 10:43:46 -0800	93 lines
[git/cctbx_project] master: de-clutter (1102af0391)	CCTBX commit	Wed, 11 Jan 2023 14:57:36 +0000	89 lines
[git/cctbx_project] master: reduce running time (a86d2b46b3)	CCTBX commit	Wed, 11 Jan 2023 09:12:51 +0000	112 lines
[git/cctbx_project] master: Use wxtbx.wx4 compatibility (e73bb0e8e7)	CCTBX commit	Tue, 10 Jan 2023 20:53:59 -0700	148 lines
[git/cctbx_project] master: Use list(x.keys()) instead of x.keys() (keys changed during iteration in one case causing crash; just make all the others clear by specifying list() (806699ff83)	CCTBX commit	Tue, 10 Jan 2023 12:08:17 -0800	322 lines
[git/cctbx_project] master: 120 seconds (3a32d1ef9c)	CCTBX commit	Tue, 10 Jan 2023 19:41:59 +0000	91 lines
[git/cctbx_project] master: use boundedsemaphore for autoview_sem and only release when calling autoview from python (e32b7c0d9f)	CCTBX commit	Tue, 10 Jan 2023 18:38:12 +0000	737 lines
[git/cctbx_project] master: Bug fix: Ensure spacegroup rotation operators are listed together with new data file (80f8f7c04a)	CCTBX commit	Mon, 9 Jan 2023 22:39:47 +0000	196 lines
[git/cctbx_project] master: send some phil string instructions in one message to avoid multiple redrawing causing spurious clip plane values (72e1a139e8)	CCTBX commit	Mon, 9 Jan 2023 17:59:05 +0000	246 lines
[git/cctbx_project] master: Display empty miller table if loading corrupt file (8726cca653)	CCTBX commit	Mon, 9 Jan 2023 17:59:04 +0000	288 lines
[git/cctbx_project] master: libtbx: update bin directory for creating macOS app bundles from installed environments (2d97116103)	CCTBX commit	Mon, 9 Jan 2023 14:28:16 +0100	94 lines
[git/cctbx_project] master: de-clutter (54b7688dfe)	CCTBX commit	Mon, 9 Jan 2023 09:18:20 +0000	61 lines
[git/cctbx_project] master: testing all modules (1d2417f3f7)	CCTBX commit	Mon, 9 Jan 2023 08:33:15 +0000	288 lines
[git/cctbx_project] master: comment (72aecfc07e)	CCTBX commit	Mon, 9 Jan 2023 08:23:19 +0000	94 lines
[git/cctbx_project] master: bug fixes: deprecated phil parameter, faulty logic for un-slicing reflections. (2ee36d7c71)	CCTBX commit	Sun, 8 Jan 2023 23:42:42 +0000	382 lines
[git/cctbx_project] master: only testing crys3d, remove sleep from ExpandInBrowser (05e63b7514)	CCTBX commit	Sun, 8 Jan 2023 18:48:29 +0000	353 lines
[git/cctbx_project] master: rename keyword (140d4745ae)	CCTBX commit	Sat, 7 Jan 2023 09:23:55 -0700	121 lines
[git/cctbx_project] master: Allow setting position of menu (125d684ea9)	CCTBX commit	Sat, 7 Jan 2023 09:21:10 -0700	120 lines
[git/cctbx_project] master: fix to prevent error if creating an array that has already been created. (6f7b8657cc)	CCTBX commit	Sat, 7 Jan 2023 15:20:11 +0000	107 lines
[git/cctbx_project] master: change default size (aac31d20db)	CCTBX commit	Sat, 7 Jan 2023 12:04:17 +0000	114 lines
[git/cctbx_project] master: Buttons creating merged intensities and multiplicities on-the-fly (8d8697ed09)	CCTBX commit	Sat, 7 Jan 2023 11:59:12 +0000	438 lines
[git/cctbx_project] master: Moved from Phenix. Utility counting points on 2D grid (625305ac9d)	CCTBX commit	Fri, 6 Jan 2023 16:11:02 -0800	323 lines
[git/cctbx_project] master: generalised from ARG to all torsions in planes (2d263db6bc)	CCTBX commit	Fri, 6 Jan 2023 13:34:50 -0800	486 lines
[git/cctbx_project] master: CI: consolidate changes to modules (a729bbe4cf)	CCTBX commit	Fri, 6 Jan 2023 17:01:38 +0100	205 lines
[git/cctbx_project] master: CI: select Boost 1.74 for Windows build (660d062475)	CCTBX commit	Fri, 6 Jan 2023 15:26:48 +0100	100 lines
[git/cctbx_project] master: reorg for more general torsions in planes (6895d78271)	CCTBX commit	Thu, 5 Jan 2023 17:36:12 -0800	127 lines
[git/cctbx_project] master: fixed bug when atom missing in ARG (844e04f671)	CCTBX commit	Thu, 5 Jan 2023 16:45:08 -0800	140 lines
[git/cctbx_project] master: adding a ARG torsion validator, will see if used (0eb6510a71)	CCTBX commit	Thu, 5 Jan 2023 15:56:36 -0800	352 lines
[git/cctbx_project] master: Allow taking a map_dict that is empty (552d287641)	CCTBX commit	Thu, 5 Jan 2023 12:50:10 -0800	92 lines
[git/cctbx_project] master: CI: clean up (151107e9bc)	CCTBX commit	Thu, 5 Jan 2023 20:44:51 +0100	247 lines
[git/cctbx_project] master: Ensure sampling_ratio is bigger than 1 (38aa5aee52)	CCTBX commit	Thu, 5 Jan 2023 12:27:34 -0700	99 lines
[git/cctbx_project] master: added output option (aae487e670)	CCTBX commit	Thu, 5 Jan 2023 11:15:20 -0800	135 lines
[git/cctbx_project] master: corrected translation (not deepcopy...) (dcb43c17a2)	CCTBX commit	Thu, 5 Jan 2023 11:15:20 -0800	731 lines
[git/cctbx_project] master: using phasertng.get_filenames for getting mtz file (a73069bdca)	CCTBX commit	Thu, 5 Jan 2023 18:47:22 +0000	168 lines
[git/cctbx_project] master: one too many calls to SetDefaultOrientation try waiting for websockeventloop.is_running before loading web page. Orient stage with explicit matrix bit more time for when is stuck, guard set_volatile_params with autoview_sem try sleeping until clientmsgqueue is empty use SetAutoview again Don't ReturnClipPlaneDistances() in SetAutoviewNoAnim. Ensure websockets server starts before webbrowser loads page with javascript websocket client 90 secs don't mess up zoom by calling stage.viewerControls.orient(m4) after SetAutoview() ReturnClipPlaneDistances from SetAutoview run SetDefaultOrientation() before other functions use orient() not applymatrix() don't bind websocket to localhost zero seconds for autoview new test without expansion more debug info a final redraw apply semaphore if not WebsocketClientMessageThread applymatrix instead of orient delay rotatestage if autoviewing guard RotateStage with autoview_sem semaphore 90seconds get initial zoom and camera position from GetClipPlaneDistances() redraw after imposing orientation just in case even more debug info bit more debugging info wrong sign update the view to camera.position.z=zaim using stage.viewerControls.orient() Bail out with "FinishedSetAutoView forced" in case autoView() appears stuck at stage.viewer.camera.position.z = -1 include zoom for RotateStage() to avoid glitches when scrolling through clip planes Refactoring with GuardedAddToBrowserMsgQueue(), using some BoundedSemaphore guard SetDefaultOrientation() and SetAutoView() with autoview_sem avoid SendOrientationMsg() when SetAutoview() is in progress better diagnostics from SetAutoview() adjust sleep time forgot to guard accessing cliplane variables in make_clip_plane() with clipplane_msg_sem semaphore (0cb7d6ce88)	CCTBX commit	Thu, 5 Jan 2023 19:21:38 +0100	196 lines
[git/cctbx_project] master: use custom error class, HKLviewerError omit calling SetAutoView from websocketclientmsgthrd Crashing out as soon as WebGL is detected not to be working by raising RuntimeError Avoid libtbx.run_tests_parallel hanging by using subprocess with capture_output=False, stdout=subprocess.DEVNULL, stderr=subprocess.DEVNULL for invoking browser omitting XFEL from the CI reduce timeouts to 40 minutes os.system instead of os.spawn try invoking browser prior to running tests to avoid hanging tests comment out tst_websocket and use chrome using default browsers again allow chrome browser and refactor get_browser_ctrl raw string (375eb61b03)	CCTBX commit	Thu, 5 Jan 2023 19:21:38 +0100	1920 lines
[git/cctbx_project] master: omit a hkls_drawn_sem.acquire() call that seems excessive, make RemoveQsettings() static forgot to switch on debug flag more debugging info from browser redraw once more reduce polling time for ProcessBrowserMessage run SendOrientationMsg() when async RenderRequest() has finished reduce sleep in SetAutoview increase sleep time in SetAutoview try rotating back and forth try ExpandInBrowser earlier try sleep after SetAutoView save terminal output from test before assertion hope to trigger a CI test (513418e5f3)	CCTBX commit	Thu, 5 Jan 2023 19:21:38 +0100	1473 lines
[git/cctbx_project] master: CI: pass environment variable to sudo (6041148ede)	CCTBX commit	Thu, 5 Jan 2023 19:21:38 +0100	92 lines
[git/cctbx_project] master: reverting to testing all modules again (b161fab0ef)	CCTBX commit	Thu, 5 Jan 2023 19:21:38 +0100	343 lines
[git/cctbx_project] master: simplify code (9b45e5a48a)	CCTBX commit	Thu, 5 Jan 2023 19:21:38 +0100	276 lines
[git/cctbx_project] master: try set DISPLAY environment for linux on azure (115cff466d)	CCTBX commit	Thu, 5 Jan 2023 19:21:38 +0100	99 lines
[git/cctbx_project] master: closingtime from HKLviewer.py (ac0971cd11)	CCTBX commit	Thu, 5 Jan 2023 19:21:38 +0100	259 lines
[git/cctbx_project] master: check once more for webgl inside HKLJavaScripts.js short pause to allow background rendering to finish before counting reflections in frustum use default browser comment out websocket test timeout thread_process_arguments() fix for hanging browser on unix, better websocket test test websocket connecting to browser try using Edge on windows again print environment 30 secs check we can open a browser bit more time string encoding again closing from thread_process_arguments() more fixes split tests into two, bug fix testing webgl try without a full path check browser path is valid try firefox for windows tests (cf0b346d4a)	CCTBX commit	Thu, 5 Jan 2023 19:21:38 +0100	1989 lines
[git/cctbx_project] master: no debug time (3a5cb5cdcb)	CCTBX commit	Thu, 5 Jan 2023 19:21:38 +0100	90 lines
[git/cctbx_project] master: bug fixes mark tst_websocket as unstable define OS browser tests as unstable and QWebEngine tests as stable 140 seconds less time Assign camera distance explicitly if using SetAutoviewNoAnim(), call setfontsize before rendering objects use --ignore-gpu-blocklist declutter more time don't overwrite os.environ["QTWEBENGINE_CHROMIUM_FLAGS"] hack for env set some flags for QTWEBENGINE_CHROMIUM_FLAGS sleep(3) with Qt5.15 mark tst_HKLviewerQtGuiSliceK and tst_HKLviewerQtGuiBinFSigF as unstable on MacOS and stable on Windows hope to trigger a full build add sleep time refactoring bug fixes (84e9b957b8)	CCTBX commit	Thu, 5 Jan 2023 19:21:38 +0100	1428 lines
[git/cctbx_project] master: use promise.race use quotes for path don't escape different path try using chrome await autoView not .then(()) re-raise HKLviewerError more time run SetAutoviewTimeout() synchronously 50 ms rather than 10ms break from while loop if ResolveAutoview called put ResolveAutoview in resolve increase timeput to 10sec wrap autoView in a Promise that times out so we can resort to explicit positioning of component if autoView stalls ReturnClipPlaneDistances after requestRender remember stage.viewerControls.orient(m4) more time SetAutoview instrad of SetAutoviewNoAnim Mark QtGui tests as failing on python 3.10 where there's no PySide2 yet with conda run tests parallel, categorise tests as expeceted failure or unstable back to only testing crys3d module using unmodified pipelines scripts from master branch formatting log file with dividing line more time run all OS browser tests sequentially and all QtGUI tests sequentially enough time (7210b5edfb)	CCTBX commit	Thu, 5 Jan 2023 19:21:38 +0100	1387 lines
[git/cctbx_project] master: fix buggy parsing of sys.argv (6c1aaaf533)	CCTBX commit	Thu, 5 Jan 2023 19:21:38 +0100	326 lines
[git/cctbx_project] master: test for making a new array and binning data Don't use semaphore if called by WebsocketClientMessageThread back to normal flags for Qwebengine use stage.viewer.requestRender() rather than RenderRequest() in SetAutoviewNoAnim() no wireframe also wireframe for saving pictures to avoid crash in javascript send proper zoom value to python by calling ReturnClipPlaneDistances() in SetAutoviewNoAnim() call stage.viewer.requestRender() rather than RenderRequest() to avoid awaiting release autoview_sem after stage.viewer.signals.rendered() event tell python to release clipplane_msg_sem after stage.viewer.signals.rendered() event try omit ExpandInBrowser() omit stage.viewerControls.signals.changed() event guard RotateMxStage properly with clipplane_msg_sem semaphore guard ExpandInBrowser() with semaphore Send "Browser.JavaScript Done" messages to note any latency more flags for software rendering ignore-gpu-blacklist and disable-gpu try software rendering for Qt Redraw once more simulate mouseclick, release semaphore once websockets server is up and running better radius default value use wireframe for drawing bug fix in SetDefaultOrientation() SetDefaultOrientation in HKLscene() requestRender after viewerControls.orient no animation (1141e54dd9)	CCTBX commit	Thu, 5 Jan 2023 19:21:38 +0100	189 lines
[git/cctbx_project] master: add firefox to linux test builds (446a837de2)	CCTBX commit	Thu, 5 Jan 2023 19:21:38 +0100	104 lines
[git/cctbx_project] master: More refactoring: Let HKLviewer.py instruct loading reflection file when specified on commandline adding time stamps to log file writings another workaround to avoid deadlocks again 3min closingtime A bit more debugging messages Try reading phil file from HKLviewer.py rather than hklview_frame.py guard writing image with semaphore Print out test of WebGL and delete any previous Qsettings that might be present closingtime=25sec (hope to trigger CI tests) (4791573bd7)	CCTBX commit	Thu, 5 Jan 2023 19:21:38 +0100	1024 lines
[git/cctbx_project] master: save a test image try displaying a different dataset first (crude initialisation) Regression test: Flush writing to log file. Add terminal output to log file Add a semaphore for signaling when the GUI has been initialised so it is then safe to execute a preset_phil string. Add another sempahore for guarding update_settings() that might be called simultaneously from the GUI and when enacting a preset_phil string from a loaded file. closingtime=20sec (and hope to trigger CI test) forgot closingtime some tweaks for debugging failing regression test avoid filename conflict with file used by other tst_HKLinfo.py (For debugging failing test) close after 25 seconds enable HKLviewer test again, de-clutter de-clutter enable HKLviewer test again, de-clutter de-clutter reduce closingtime to 20 seconds enable HKLviewer test again, de-clutter (c0b50cfd21)	CCTBX commit	Thu, 5 Jan 2023 19:21:38 +0100	1720 lines
[git/cctbx_project] master: Apply semaphore for SetClipPlaneDistances() more sleep time adjusting fix some more potential race conditions fix potential bug increase sleep time again in viewerControls.signals.changed.add() increase sleep time in viewerControls.signals.changed.add more debugging info from javascript 90sec (fb9e35bfb4)	CCTBX commit	Thu, 5 Jan 2023 19:21:38 +0100	1201 lines
[git/cctbx_project] master: omit GetClipPlaneDistances() in DrawNGLJavaScript() to avoid potential race condition (5f1e2518e1)	CCTBX commit	Thu, 5 Jan 2023 19:21:38 +0100	204 lines
[git/cctbx_project] master: utf8 bug fix better webgl diagnostics try some webgl flags bug fix run actual test test commandline HKLviewer without Qtgui try with Qwebengine as a single process initiate_gui from after selected_info message try an additional thread for processing arguments un-cluttered more diagnostics try using just hklview_frame.py for acting on phil_file and image_file arguments show first scene again closingtime =90 secs ignore non-existent file try delete tar archive before creating it (in case an existing archive messes up files in the new archive) Omit other cctbx modules than crys3d from regression test to speed up debugging HKLviewer regression test comment out "retryCountOnTaskFailure: 3" bug fix in mprint Added date stamp and version to log file. Fixed incorrectly working mprint feature tweak timings try guarding GetClipPlaneDistances with hkls_drawn_sem slightly more diagnostics 180 seconds long test (7373e5c3cc)	CCTBX commit	Thu, 5 Jan 2023 19:21:38 +0100	2137 lines
[git/cctbx_project] master: workaround for dots replaced by underscores in filename when running Xtricorder (6138d5d7c0)	CCTBX commit	Thu, 5 Jan 2023 19:21:38 +0100	162 lines
[git/cctbx_project] master: CI: avoid interactive prompts when installing Ubuntu packages (dd1b63381e)	CCTBX commit	Thu, 5 Jan 2023 19:21:38 +0100	89 lines
[git/cctbx_project] master: revert inadvertent change (7b23c903a6)	CCTBX commit	Thu, 5 Jan 2023 19:21:38 +0100	104 lines
[git/cctbx_project] master: more formatting (ad955f3800)	CCTBX commit	Thu, 5 Jan 2023 19:21:38 +0100	1095 lines
[git/cctbx_project] master: Catch case where map_manager is undefined and request for data is made (bc006eb975)	CCTBX commit	Wed, 4 Jan 2023 15:04:14 -0800	136 lines
[git/cctbx_project] master: move the clusters (back) to original position (17a2b04c0e)	CCTBX commit	Wed, 4 Jan 2023 09:37:52 -0800	241 lines
[git/cctbx_project] master: added energy printout for hartree (36bb6626fd)	CCTBX commit	Tue, 3 Jan 2023 16:17:15 -0800	265 lines
[git/cctbx_project] master: added option to specify the buffer model (1f0ad99a97)	CCTBX commit	Tue, 3 Jan 2023 16:17:15 -0800	482 lines
[git/cctbx_project] master: clean clutter (2823641c09)	CCTBX commit	Tue, 3 Jan 2023 06:34:55 -0700	61 lines
[git/cctbx_project] master: catch None (f0fbacd8d7)	CCTBX commit	Tue, 3 Jan 2023 06:19:02 -0700	118 lines
[git/cctbx_project] master: Do not try to keep restraints manager if model is shifted in place (9a87f46910)	CCTBX commit	Tue, 3 Jan 2023 05:18:33 -0800	138 lines
[git/cctbx_project] master: Update CHANGELOG.rst for 2022.12 release (b3e8bd7166)	CCTBX commit	Mon, 2 Jan 2023 02:51:21 +0100	90 lines
[git/cctbx_project] tag 'v2022.12' created	CCTBX commit	Mon, 2 Jan 2023 02:51:21 +0100	40 lines

CCTBX-COMMIT Archives

January 2023

Options

Subject

From

Date

Size

JiscMail Tools

RSS Feeds and Sharing

Search Archives

Archives