JISCMail - CCTBX-COMMIT Archives

Email discussion lists for the UK Education and Research communities

Subscriber's Corner

Email Lists

CCTBX-COMMIT Archives

June 2019

View:

Show Author | Hide Author

		LISTSERV Archives
		CCTBX-COMMIT Home

Options

Subscribe or Unsubscribe

Get Password

Subject	From	Date	Size
[git/dxtbx] master: Clean clutter (f877b3f)	DXTBX commit	Sun, 30 Jun 2019 05:10:31 +0100	101 lines
[git/cctbx_project] master: Add more atom shapes calculators, and more tests (8e091a15a1)	CCTBX commit	Sat, 29 Jun 2019 16:10:42 -0700	472 lines
[git/cctbx_project] master: Add multiple sources for dependency downloads (b004c2cb1b)	CCTBX commit	Fri, 28 Jun 2019 20:30:28 +0100	103 lines
[git/dxtbx] master: Only decode header in Python3 (0a9ba06)	DXTBX commit	Fri, 28 Jun 2019 16:07:10 +0100	115 lines
[git/dxtbx] master: Write file as bytes (2d6d391)	DXTBX commit	Fri, 28 Jun 2019 15:17:58 +0100	105 lines
[git/dxtbx] master: bytes and strings and print (4988ee0)	DXTBX commit	Fri, 28 Jun 2019 15:13:14 +0100	126 lines
[git/dxtbx] master: drop superfluous encoding step (c44e7b2)	DXTBX commit	Fri, 28 Jun 2019 14:27:29 +0100	117 lines
[git/dxtbx] master: Py 2/3 CBF: even more bytestring interface issues (73e8656)	DXTBX commit	Fri, 28 Jun 2019 14:13:32 +0100	263 lines
[git/dxtbx] master: account for renamed/revived tests (7b927a2)	DXTBX commit	Fri, 28 Jun 2019 13:59:30 +0100	114 lines
[git/dxtbx] master: add support for shadowing on DLS i03 detector (8bb14d8)	DXTBX commit	Fri, 28 Jun 2019 11:17:58 +0100	1223 lines
[git/dxtbx] master: add test with purpose (0c3fd58)	DXTBX commit	Fri, 28 Jun 2019 11:17:58 +0100	117 lines
[git/dxtbx] master: DLS I03 and I04 are identical as far as format class is concerned (cfb7424)	DXTBX commit	Fri, 28 Jun 2019 11:17:57 +0100	96 lines
[git/dxtbx] master: These are two different tests, so split them up (6ca03ee)	DXTBX commit	Fri, 28 Jun 2019 11:15:32 +0100	388 lines
[git/dxtbx] master: remove broken test (855c504)	DXTBX commit	Fri, 28 Jun 2019 10:53:23 +0100	170 lines
[git/dxtbx] master: remove test without clear purpose (55498cf)	DXTBX commit	Fri, 28 Jun 2019 10:43:12 +0100	116 lines
[git/dxtbx] master: Py 2/3 CBF: fix more bytestring interface issues (60d730e)	DXTBX commit	Fri, 28 Jun 2019 10:36:41 +0100	311 lines
[git/dxtbx] master: experimentlist refactoring (#54) (fd0df10)	DXTBX commit	Fri, 28 Jun 2019 10:08:02 +0100	1848 lines
[git/cctbx_project] master: This makes it even smaller (1d1e1dd68f)	CCTBX commit	Thu, 27 Jun 2019 14:29:28 -0700	140 lines
[git/cctbx_project] master: Make it smaller (d2c6de34ff)	CCTBX commit	Thu, 27 Jun 2019 13:43:07 -0700	105 lines
[git/cctbx_project] master: catch printout failure and allow return of masked fraction or solvent fraction (182db5fa5d)	CCTBX commit	Thu, 27 Jun 2019 10:51:15 -0600	258 lines
[git/dxtbx] master: Skip permanently broken tests entirely (96a8a71)	DXTBX commit	Thu, 27 Jun 2019 11:29:34 +0100	132 lines
[git/dxtbx] master: minor test refactoring (f2832a3)	DXTBX commit	Thu, 27 Jun 2019 11:26:18 +0100	185 lines
[git/dxtbx] master: Correctly decode pickles on Python 3 (be16109)	DXTBX commit	Thu, 27 Jun 2019 11:11:33 +0100	657 lines
[git/dxtbx] master: These functions should be no-ops on Python 3 (b7d5f3e)	DXTBX commit	Thu, 27 Jun 2019 11:07:39 +0100	108 lines
[git/dxtbx] master: address various flake8 warnings (e41cc13)	DXTBX commit	Thu, 27 Jun 2019 09:39:50 +0100	3069 lines
[git/dxtbx] master: Python 3: fix format class string/bytes issues (#51) (c8b9396)	DXTBX commit	Thu, 27 Jun 2019 08:45:40 +0100	2427 lines
[git/cctbx_project] master: 🐙 (ba1c1077f9)	CCTBX commit	Thu, 27 Jun 2019 08:31:47 +0100	97 lines
[git/dxtbx] master: clean up dependency imports (df7b58b)	DXTBX commit	Thu, 27 Jun 2019 08:26:30 +0100	415 lines
[git/cctbx_project] master: More robust resolution extraction (172dc49cfa)	CCTBX commit	Wed, 26 Jun 2019 17:01:03 -0700	111 lines
[git/cctbx_project] master: Add more statistics (f59cc2e20b)	CCTBX commit	Wed, 26 Jun 2019 16:35:42 -0700	351 lines
[git/cctbx_project] master: Re-use the same mpi_helper and mpi_logger objects in all worker objects. (c53d6ea5b6)	CCTBX commit	Wed, 26 Jun 2019 14:48:53 -0700	1446 lines
[git/cctbx_project] master: Add overall and filtered versions (31db93bbb3)	CCTBX commit	Wed, 26 Jun 2019 14:47:53 -0700	189 lines
[git/dxtbx] master: remove iotbx test from dxtbx (5c5166f)	DXTBX commit	Wed, 26 Jun 2019 12:58:47 +0100	166 lines
[git/dxtbx] master: reject pull requests for dials/dxtbx (8d0c17e)	DXTBX commit	Wed, 26 Jun 2019 12:32:36 +0100	140 lines
[git/cctbx_project] master: Fix detector formats for Python 3 (de19fd3a5b)	CCTBX commit	Wed, 26 Jun 2019 11:17:56 +0100	499 lines
[git/cctbx_project] master: Avoid comparing None to numbers (68ec384ec5)	CCTBX commit	Wed, 26 Jun 2019 11:16:22 +0100	95 lines
[git/dxtbx] master: Temporarily disable test on Python 3 (63528b9)	DXTBX commit	Wed, 26 Jun 2019 10:00:33 +0100	142 lines
[git/dxtbx] master: Python 3: libfuturize.fixes.fix_xrange_with_import (#50) (b3c9a07)	DXTBX commit	Wed, 26 Jun 2019 09:34:50 +0100	331 lines
[git/cctbx_project] master: Support multiple URLs and retries for package downloads (3b2f20ad97)	CCTBX commit	Wed, 26 Jun 2019 09:01:59 +0100	234 lines
[git/dxtbx] master: Python 3: RAXIS format class update/refactoring (#49) (4a9727f)	DXTBX commit	Tue, 25 Jun 2019 08:38:49 +0100	1178 lines
[git/cctbx_project] master: XFEL GUI Updates (88acf1960c)	CCTBX commit	Tue, 25 Jun 2019 13:12:11 +0900	413 lines
[git/cctbx_project] master: Implement timing of workers. Output unit cell parameters with more precision. (ded13b7c8c)	CCTBX commit	Mon, 24 Jun 2019 16:26:46 -0700	351 lines
[git/cctbx_project] master: Don't treat error messages as file contents (372a9a3756)	CCTBX commit	Mon, 24 Jun 2019 23:39:25 +0100	110 lines
[git/cctbx_project] master: Fix dtrek and pilatus_minicbf formats for Python 3 (3b9d45d57c)	CCTBX commit	Mon, 24 Jun 2019 22:27:03 +0100	472 lines
[git/dxtbx] master: return None if dynamic_shadowing is not set (37f6c60)	DXTBX commit	Mon, 24 Jun 2019 10:50:11 +0100	93 lines
[git/cctbx_project] master: Avoid comparing None to integers (ab5ba8f993)	CCTBX commit	Mon, 24 Jun 2019 10:41:11 +0100	91 lines
[git/dxtbx] master: Python 3: libpasteurize.fixes.fix_newstyle (#47) (99e4e0d)	DXTBX commit	Mon, 24 Jun 2019 08:45:53 +0100	2381 lines
[git/cctbx_project] master: Change default marker size on MolProbity wxPython plots to be closer to file output (c5f081db76)	CCTBX commit	Sun, 23 Jun 2019 18:17:20 -0700	95 lines
[git/cctbx_project] master: XFEL GUI Standalone bug fixes (94c6e1fff4)	CCTBX commit	Sat, 22 Jun 2019 14:08:50 +0900	406 lines
[git/cctbx_project] master: After rank 0 reads the model, save scaling targets to phil parameters of all ranks. (b767d35b1c)	CCTBX commit	Fri, 21 Jun 2019 17:29:47 -0700	320 lines
[git/cctbx_project] master: option move to frame of reference (2dac8c0ba5)	CCTBX commit	Fri, 21 Jun 2019 15:49:55 -0700	132 lines
[git/dxtbx] master: No dynamic shadowing if single-axis gonimeter on DLS I04 (8cfe299)	DXTBX commit	Fri, 21 Jun 2019 15:55:05 +0100	109 lines
[git/dxtbx] master: Revert "Faster deserialisation of still experiments via information reuse (#38)" (dba2084)	DXTBX commit	Fri, 21 Jun 2019 15:42:54 +0100	860 lines
[git/cctbx_project] master: fix syntax error introduced by py3 changes (86ea48b) (f727d36904)	CCTBX commit	Fri, 21 Jun 2019 12:08:28 +0100	77 lines
[git/dxtbx] master: slightly clean up I04 format class (92dbac3)	DXTBX commit	Fri, 21 Jun 2019 11:45:38 +0100	207 lines
[git/cctbx_project] master: Add parameters dispatch.step_list and output.save_experiments_and_reflections (4843ecf82a)	CCTBX commit	Fri, 21 Jun 2019 19:25:09 +0900	388 lines
[git/dxtbx] master: Move goalposts (fe0ff45)	DXTBX commit	Fri, 21 Jun 2019 10:58:43 +0100	100 lines
[git/dxtbx] master: tighten thumbscrews to 87% (a5fb9e1)	DXTBX commit	Fri, 21 Jun 2019 10:29:14 +0100	87 lines
[git/cctbx_project] master: Add retry-facility, alt URLs to download function (2b0b202f21)	CCTBX commit	Fri, 21 Jun 2019 10:00:11 +0100	181 lines
[git/dxtbx] master: Python 3: lib2to3.fixes.fix_zip (#46) (6fbd608)	DXTBX commit	Fri, 21 Jun 2019 08:56:56 +0100	670 lines
[git/cctbx_project] master: Cumulative cxi.merge changes (16eb3d26bd)	CCTBX commit	Thu, 20 Jun 2019 23:24:39 -0700	455 lines
[git/cctbx_project] master: Performance improvements for merging (958512a421)	CCTBX commit	Fri, 21 Jun 2019 12:25:50 +0900	256 lines
[git/cctbx_project] master: XFEL GUI: more support for local processing (4d0bcddb1c)	CCTBX commit	Fri, 21 Jun 2019 12:25:50 +0900	250 lines
[git/cctbx_project] master: Fix a bug in the handling of empty reflection lists in statistics calculations: prevent blocking of collective MPI operations. (6483d9fc60)	CCTBX commit	Thu, 20 Jun 2019 17:10:28 -0700	701 lines
[git/cctbx_project] master: cootbx: script run with Coot python does not have access to CCTBX modules (e8b286610e)	CCTBX commit	Thu, 20 Jun 2019 13:58:55 -0700	226 lines
[git/cctbx_project] master: IOTA and PRIME UI updates and bugfixes (1c25a60068)	CCTBX commit	Thu, 20 Jun 2019 12:24:39 -0700	139 lines
[git/dxtbx] master: TIFF format class refactoring (#48) (1caec48)	DXTBX commit	Thu, 20 Jun 2019 12:09:44 +0100	548 lines
[git/cctbx_project] master: Check if reflection list is empty before trying to split it into asu HKLs. Do not apply filter if params.filter.algorithm is not specified. (307c14b9e9)	CCTBX commit	Wed, 19 Jun 2019 23:05:46 -0700	631 lines
[git/cctbx_project] master: Properly wrangle the undead (2bb1bd0795)	CCTBX commit	Thu, 20 Jun 2019 09:59:53 +0900	96 lines
[git/cctbx_project] master: XFEL GUI: first pass at implementation of local mode for data processing (c3ab944d40)	CCTBX commit	Thu, 20 Jun 2019 09:25:54 +0900	630 lines
[git/cctbx_project] master: bugfix, see tst_096 (a06c4abba6)	CCTBX commit	Wed, 19 Jun 2019 14:12:56 -0700	150 lines
[git/dxtbx] master: partially revert 76a338932a0e73c74 (cf09487)	DXTBX commit	Wed, 19 Jun 2019 13:13:48 +0100	98 lines
[git/dxtbx] master: Do not read file indefinitely (76a3389)	DXTBX commit	Wed, 19 Jun 2019 12:14:55 +0100	175 lines
[git/dxtbx] master: Faster deserialisation of still experiments via information reuse (#38) (863d9c6)	DXTBX commit	Wed, 19 Jun 2019 12:09:34 +0100	920 lines
[git/cctbx_project] master: Fix adsc_minicbf format for Python 3 (4604fd9b13)	CCTBX commit	Wed, 19 Jun 2019 11:25:10 +0100	237 lines
[git/dxtbx] master: Clean clutter (30adeb4)	DXTBX commit	Wed, 19 Jun 2019 11:03:22 +0100	236 lines
[git/dxtbx] master: Add a .clang-format to configure C++ formatting (798ebbd)	DXTBX commit	Wed, 19 Jun 2019 11:01:59 +0100	128 lines
[git/cctbx_project] master: Fix MAR format for Python 3 (835f44c972)	CCTBX commit	Wed, 19 Jun 2019 10:51:26 +0100	267 lines
[git/dxtbx] master: add link to related ticket (b11b90a)	DXTBX commit	Wed, 19 Jun 2019 10:26:55 +0100	88 lines
[git/dxtbx] master: PAL XFEL raw h5 data format class (bf8c1fd)	DXTBX commit	Wed, 19 Jun 2019 14:42:09 +0900	288 lines
[git/cctbx_project] master: Save some code for the future (5f23945fa1)	CCTBX commit	Tue, 18 Jun 2019 17:06:06 -0700	106 lines
[git/cctbx_project] master: fixed the misassignment of angles to residues in mp_geo/for MolProbity (9dca8c6196)	CCTBX commit	Tue, 18 Jun 2019 17:19:10 -0400	136 lines
[git/cctbx_project] master: Add citation for mandatory submission of mmCIF files (b36d1cb8ee)	CCTBX commit	Tue, 18 Jun 2019 11:56:12 -0700	117 lines
[git/dxtbx] master: Sanity-check to catch old dxtbx configurations (86e63bd)	DXTBX commit	Tue, 18 Jun 2019 17:40:28 +0100	119 lines
[git/dxtbx] master: fix deprecation warnings (42caec5)	DXTBX commit	Tue, 18 Jun 2019 11:52:36 +0100	122 lines
[git/dxtbx] master: Python 3 conversion: Update test expectations (5003be0)	DXTBX commit	Tue, 18 Jun 2019 08:13:16 +0100	988 lines
[git/dxtbx] master: Python 3: libfuturize.fixes.fix_future_standard_library (#42) (8b2dcbc)	DXTBX commit	Tue, 18 Jun 2019 08:09:10 +0100	159 lines
[git/dxtbx] master: Python 3: libfuturize.fixes.fix_future_standard_library_urllib (#41) (6911095)	DXTBX commit	Tue, 18 Jun 2019 08:08:13 +0100	182 lines
[git/dxtbx] master: Python 3: libfuturize.fixes.fix_basestring (#44) (056d349)	DXTBX commit	Tue, 18 Jun 2019 08:06:18 +0100	255 lines
[git/dxtbx] master: Python 3: lib2to3.fixes.fix_map (#43) (6780489)	DXTBX commit	Tue, 18 Jun 2019 08:03:01 +0100	155 lines
[git/cctbx_project] master: fixed the misassignment of angles to residues (f86ebaa953)	CCTBX commit	Mon, 17 Jun 2019 15:54:38 -0700	280 lines
[git/cctbx_project] master: Fix up file load calculator so it can be used stand-alone. (a74d883c4b)	CCTBX commit	Mon, 17 Jun 2019 15:51:08 -0700	1251 lines
[git/cctbx_project] master: Print out average CC (cd9c87ad45)	CCTBX commit	Mon, 17 Jun 2019 14:58:47 -0700	93 lines
[git/cctbx_project] master: bugfix (120a914e62)	CCTBX commit	Mon, 17 Jun 2019 13:55:18 -0700	90 lines
[git/cctbx_project] master: NBOs: add missed parentheses. Some cleanup. (93abc45d56)	CCTBX commit	Mon, 17 Jun 2019 11:22:03 -0700	175 lines
[git/dxtbx] master: Fix up MarIP detector format class (d87e92a)	DXTBX commit	Mon, 17 Jun 2019 09:41:09 +0100	149 lines
[git/cctbx_project] master: Fix unicode issues in XDS parameter file readers (a5d843fcec)	CCTBX commit	Mon, 17 Jun 2019 09:33:42 +0100	312 lines
[git/cctbx_project] master: Remove alt conformations if necessary (ee2163cc45)	CCTBX commit	Sun, 16 Jun 2019 19:16:18 -0700	123 lines
[git/cctbx_project] master: More tests and safeguards (6590284a21)	CCTBX commit	Sun, 16 Jun 2019 15:17:57 -0700	74 lines
[git/cctbx_project] master: CI: reorganize Azure Pipelines scripts (a588853d83)	CCTBX commit	Sat, 15 Jun 2019 18:00:56 -0700	811 lines
[git/dxtbx] master: Clean up the (experimental) EigerStream class (c3b14e1)	DXTBX commit	Sat, 15 Jun 2019 19:49:03 +0100	331 lines
[git/dxtbx] master: test refactoring (0b4f036)	DXTBX commit	Sat, 15 Jun 2019 19:09:19 +0100	1032 lines
[git/cctbx_project] master: NBOs: remove redundant parameter. (970914b0a6)	CCTBX commit	Fri, 14 Jun 2019 22:06:09 -0700	561 lines
[git/cctbx_project] master: NBOs: Use find_clashes and find_hbonds parameters. (12a0bdffd7)	CCTBX commit	Fri, 14 Jun 2019 19:30:09 -0700	311 lines
[git/cctbx_project] master: NBOs: apply code review. (24aec69049)	CCTBX commit	Fri, 14 Jun 2019 19:05:49 -0700	219 lines
[git/cctbx_project] master: Validate Ligands: some cleanup. (d81e97c726)	CCTBX commit	Fri, 14 Jun 2019 19:05:49 -0700	280 lines
[git/cctbx_project] master: Output difference phil, datestamp, pdb and mtz summaries to the log file. Improve merger worker output. In statistics, remove resolution scalar suggestion: it is not robust. (b5743e8312)	CCTBX commit	Fri, 14 Jun 2019 17:27:09 -0700	784 lines
[git/cctbx_project] master: Apply code review. (61876a0b77)	CCTBX commit	Fri, 14 Jun 2019 17:01:30 -0700	196 lines
[git/cctbx_project] master: code review (61cfee1bfe)	CCTBX commit	Fri, 14 Jun 2019 16:37:09 -0700	160 lines
[git/cctbx_project] master: Add retry loop for loading results (6d19a54e79)	CCTBX commit	Fri, 14 Jun 2019 13:49:36 -0700	148 lines
[git/dxtbx] master: Clean up a couple of leading comments (2b2c35f)	DXTBX commit	Fri, 14 Jun 2019 19:13:01 +0100	171 lines
[git/dxtbx] master: Add .expt extension. (e44f6cf)	DXTBX commit	Fri, 14 Jun 2019 17:36:09 +0100	93 lines
[git/dxtbx] master: refactor a few tests (1f2118a)	DXTBX commit	Fri, 14 Jun 2019 16:43:20 +0100	1225 lines
[git/dxtbx] master: Python3: Fix much of CBF Formatters (pull request #37) (b1ae3da)	DXTBX commit	Fri, 14 Jun 2019 15:13:57 +0100	143 lines
[git/dxtbx] master: Fix dxtbx Registry deprecation warnings for find() (a6edac5)	DXTBX commit	Fri, 14 Jun 2019 14:35:27 +0100	531 lines
[git/dxtbx] master: Replace duplicate test function with real function (32b3562)	DXTBX commit	Fri, 14 Jun 2019 14:08:49 +0100	287 lines
[git/cctbx_project] master: remove dxtbx attributes (591818baf4)	CCTBX commit	Fri, 14 Jun 2019 12:52:00 +0100	542 lines
[git/dxtbx] master: Python 3 conversion: Update test expectations (9e50d47)	DXTBX commit	Fri, 14 Jun 2019 08:40:52 +0100	343 lines
[git/dxtbx] master: code cleanup (flake8) (bfdce61)	DXTBX commit	Fri, 14 Jun 2019 08:40:48 +0100	1031 lines
[git/dxtbx] master: restructure understand method in FormatXTC and subclasses (2dd64e2)	DXTBX commit	Fri, 14 Jun 2019 08:27:56 +0100	212 lines
[git/dxtbx] master: Python 3: lib2to3.fixes.fix_dict (#40) (f2cda5d)	DXTBX commit	Fri, 14 Jun 2019 08:27:32 +0100	1597 lines
[git/cctbx_project] master: Riding H: informative output for weird geometries. (496dc444f1)	CCTBX commit	Wed, 12 Jun 2019 15:56:31 -0700	202 lines
[git/cctbx_project] master: XFEL GUI: remove options from run block dialog when in standalone mode (e6d4d6cc5c)	CCTBX commit	Wed, 12 Jun 2019 15:45:07 -0700	1212 lines
[git/cctbx_project] master: XFEL GUI: remove unused parameter (average_raw_data) and re-write help strings (50f0af56fe)	CCTBX commit	Wed, 12 Jun 2019 14:21:55 -0700	279 lines
[git/cctbx_project] master: XFEL gui bugfix (5a43c5d7c0)	CCTBX commit	Wed, 12 Jun 2019 14:06:29 -0700	127 lines
[git/dxtbx] master: clean up code in format classes (4b91771)	DXTBX commit	Wed, 12 Jun 2019 20:38:18 +0100	536 lines
[git/dxtbx] master: Py 2/3 CBF: fix unicode/binary in read_cbf_image() (47e904d)	DXTBX commit	Wed, 12 Jun 2019 20:38:18 +0100	1161 lines
[git/dxtbx] master: remove unused format class (63bd5df)	DXTBX commit	Wed, 12 Jun 2019 20:15:20 +0100	797 lines
[git/dxtbx] master: Py 2/3 CBF: handle bytestrings in FormatCBF (3623291)	DXTBX commit	Wed, 12 Jun 2019 20:14:21 +0100	353 lines
[git/dxtbx] master: Py 2/3 CBF: handle only byte strings from pycbf (44b6d72)	DXTBX commit	Wed, 12 Jun 2019 20:10:29 +0100	1655 lines
[git/cctbx_project] master: Riding H: informative output message (bug report V. Drago 6-11-2019). (496ff769b7)	CCTBX commit	Wed, 12 Jun 2019 10:56:16 -0700	186 lines
Jenkins 5a cctbx Tests build 8498 Fixed	DLS Jenkins	Wed, 12 Jun 2019 18:19:46 +0100	42 lines
[git/cctbx_project] master: Fix indentation. (eb958cf504)	CCTBX commit	Wed, 12 Jun 2019 10:07:27 -0700	118 lines
[git/dxtbx] master: Raise EnvironmentError/RuntimeError (3bd0ecd)	DXTBX commit	Wed, 12 Jun 2019 13:36:53 +0100	270 lines
[git/dxtbx] master: Rename Class->cls in FormatMultiImage (05283ba)	DXTBX commit	Wed, 12 Jun 2019 12:11:43 +0100	392 lines
[git/dxtbx] master: Renames and refactors in experiment_list.py (1069563)	DXTBX commit	Wed, 12 Jun 2019 12:06:05 +0100	390 lines
[git/dxtbx] master: Ignore some warnings when running pytest (a1764a3)	DXTBX commit	Wed, 12 Jun 2019 11:22:38 +0100	105 lines
[git/dxtbx] master: use entry points in format registry (#34) (2be9eea)	DXTBX commit	Wed, 12 Jun 2019 11:04:23 +0100	2695 lines
[git/cctbx_project] master: Use merging.minimum_multiplicity phil parameter to filter HKLs when merging or calculating statistics of reflection intensities. (fbbd15374f)	CCTBX commit	Tue, 11 Jun 2019 15:10:02 -0700	809 lines
[git/cctbx_project] master: Better calculation of SS length in central place. (4b55de6c89)	CCTBX commit	Tue, 11 Jun 2019 13:06:08 -0700	260 lines
[git/cctbx_project] master: For cspad cbfs, no longer round to ints. Use floats instead. (7ba35af4a6)	CCTBX commit	Tue, 11 Jun 2019 11:11:05 -0700	153 lines
[git/cctbx_project] master: Py2/3: unbreak xfel gui (zip) (e0f95f8c26)	CCTBX commit	Tue, 11 Jun 2019 11:11:04 -0700	203 lines
[git/cctbx_project] master: Bugfix for stripe_experiments (eb0ae689c0)	CCTBX commit	Tue, 11 Jun 2019 11:11:04 -0700	92 lines
[git/cctbx_project] master: Add additional_gain_factor for cspad (4472d8948d)	CCTBX commit	Tue, 11 Jun 2019 11:11:04 -0700	252 lines
[git/cctbx_project] master: DataManager: set logger before loading PHIL since it may be needed to process files in PHIL (c3cc0da6cd)	CCTBX commit	Tue, 11 Jun 2019 10:52:19 -0700	113 lines
[git/cctbx_project] master: synch with dials index refactoring (129dd7f3cc)	CCTBX commit	Tue, 11 Jun 2019 09:01:49 -0700	218 lines
[git/cctbx_project] master: flex.sort_permutation: stable sort by default (#288) (4354713150)	CCTBX commit	Tue, 11 Jun 2019 16:21:01 +0100	98 lines
[git/dxtbx] master: Auto xfail tests when running under Python 3 (f3daa9c)	DXTBX commit	Tue, 11 Jun 2019 09:30:07 +0100	427 lines
Jenkins 5a cctbx Tests build 8485 Fixed	DLS Jenkins	Tue, 11 Jun 2019 02:13:50 +0100	43 lines
Jenkins 5a cctbx Tests build 8484 Failure	DLS Jenkins	Tue, 11 Jun 2019 00:47:21 +0100	406 lines
[git/cctbx_project] master: NBO: cleanup (9f31efcbf8)	CCTBX commit	Mon, 10 Jun 2019 16:08:04 -0700	128 lines
[git/cctbx_project] master: NBO: Make sure unit_cell exists. (3132d1662c)	CCTBX commit	Mon, 10 Jun 2019 14:55:20 -0700	118 lines
[git/cctbx_project] master: NBOs: bugfix (d501bb364d)	CCTBX commit	Mon, 10 Jun 2019 14:21:08 -0700	110 lines
[git/cctbx_project] master: py3: fix parsing of URL (7e85d8c3c3)	CCTBX commit	Mon, 10 Jun 2019 13:05:40 -0700	120 lines
[git/cctbx_project] master: Comparama: getting results in another shape. Pavel's test number. (2a5cf1230b)	CCTBX commit	Mon, 10 Jun 2019 11:06:39 -0700	186 lines
[git/dxtbx] master: Remove redundant try block in conftest (ab2a81a)	DXTBX commit	Mon, 10 Jun 2019 17:04:59 +0100	158 lines
[git/dxtbx] master: Skip HDF5 tests if h5py is not present (bd107d7)	DXTBX commit	Mon, 10 Jun 2019 15:48:52 +0100	380 lines
[git/cctbx_project] master: mmCIF output: updates for GUI (2018fb0362)	CCTBX commit	Sun, 9 Jun 2019 22:35:35 -0700	161 lines
[git/cctbx_project] master: hbond.py (22248906ae)	CCTBX commit	Sat, 8 Jun 2019 06:05:54 -0700	87 lines
[git/cctbx_project] master: clean it to make bot happy (b4c4d722bd)	CCTBX commit	Sat, 8 Jun 2019 00:16:08 -0700	63 lines
[git/cctbx_project] master: Make it python3 friendly. I'm pretty sure I did this in the first place, I have no idea how this not ended up in the repository. Git is so confusing! (84ea843176)	CCTBX commit	Fri, 7 Jun 2019 23:53:20 -0700	109 lines
[git/dxtbx] master: Add libtbx_config to black's non .py whitelist (70ee2c5)	DXTBX commit	Sat, 8 Jun 2019 00:30:53 +0100	107 lines
[git/cctbx_project] master: Implement ha14 intensity error correction; implement MPI-based cc-int and cc-iso; port cxi_cc functionality into mpi.merge; use reference model consistent with phil params; implement wavelength statistics; inject average unit cell and wavelength into phil params. (34a49645bd)	CCTBX commit	Fri, 7 Jun 2019 14:21:41 -0700	112 lines
[git/cctbx_project] master: Implement ha14 intensity error correction; implement MPI-based cc-int and cc-iso; port cxi_cc functionality into mpi.merge; use reference model consistent with phil params; implement wavelength statistics; inject average unit cell and wavelength into phil params. (73ff4401ad)	CCTBX commit	Fri, 7 Jun 2019 14:08:43 -0700	1985 lines
[git/cctbx_project] master: de-clutterifying (6a9239f5c0)	CCTBX commit	Fri, 7 Jun 2019 14:06:54 -0700	87 lines
[git/cctbx_project] master: IOTA & PRIME GUI updates (82b81bb3dc)	CCTBX commit	Fri, 7 Jun 2019 14:05:26 -0700	106 lines
[git/cctbx_project] master: conda: move Phenix environments (50f1504226)	CCTBX commit	Fri, 7 Jun 2019 13:42:33 -0700	126 lines
[git/dxtbx] master: Add helper files to track Python 3 test failures (eb5ecc3)	DXTBX commit	Fri, 7 Jun 2019 14:46:50 +0100	1883 lines
[git/dxtbx] master: Fix pytest warning with deprecated parameter (b9d55d6)	DXTBX commit	Fri, 7 Jun 2019 14:02:26 +0100	118 lines
[git/cctbx_project] master: workaround for ongoing certificate issue (267205b0ef)	CCTBX commit	Fri, 7 Jun 2019 13:53:59 +0100	121 lines
[git/dxtbx] master: set up towncrier infrastructure (51e8a39)	DXTBX commit	Fri, 7 Jun 2019 12:25:45 +0100	101 lines
[git/cctbx_project] master: correct label_seq_id output and tests (3c1663d429)	CCTBX commit	Thu, 6 Jun 2019 17:12:55 -0700	256 lines
[git/cctbx_project] master: fixed the _struct_conn loop to use label_asym_id (edbe96f7df)	CCTBX commit	Thu, 6 Jun 2019 16:35:09 -0700	422 lines
[git/dxtbx] master: add test for deprecated function (ed81e0f)	DXTBX commit	Thu, 6 Jun 2019 11:01:15 +0100	116 lines
[git/cctbx_project] master: NBO: Stub to ignore superposed chains. TBD if added. (be23312edc)	CCTBX commit	Wed, 5 Jun 2019 16:33:31 -0700	107 lines
[git/cctbx_project] master: Installer: add option to use conda dependencies (7ab733fd7c)	CCTBX commit	Wed, 5 Jun 2019 15:49:14 -0700	247 lines
[git/cctbx_project] master: py3: update file hashes since files were changed (c0f33d1b38)	CCTBX commit	Wed, 5 Jun 2019 11:46:04 -0700	103 lines
[git/cctbx_project] master: py3: fix itertools and update hash (b3d1e68330)	CCTBX commit	Wed, 5 Jun 2019 11:35:28 -0700	145 lines
[git/cctbx_project] master: Add theta_2 to print out (d61040564a)	CCTBX commit	Wed, 5 Jun 2019 22:06:44 +0800	102 lines
[git/cctbx_project] master: bug fix (25ebbb9fcc)	CCTBX commit	Wed, 5 Jun 2019 22:02:57 +0800	107 lines
[git/cctbx_project] master: Bug fix in using theta_2 angle. More tests coming. (03b403ff4a)	CCTBX commit	Wed, 5 Jun 2019 21:58:18 +0800	360 lines
[git/cctbx_project] master: py3: print fixes (86ea48ba2e)	CCTBX commit	Tue, 4 Jun 2019 22:49:42 -0700	553 lines
[git/cctbx_project] master: py3: update fixes (a5da8edefb)	CCTBX commit	Tue, 4 Jun 2019 16:44:22 -0700	196 lines
[git/cctbx_project] master: Some refactoring + output error code on reduce crash (c59aeab139)	CCTBX commit	Tue, 4 Jun 2019 14:46:49 -0700	218 lines
[git/cctbx_project] master: CI: stop checking out py3 branch (c53d96ee83)	CCTBX commit	Tue, 4 Jun 2019 14:04:18 -0700	193 lines
[git/cctbx_project] master: conda: use warn instead of raise for RuntimeWarning (e85a705815)	CCTBX commit	Tue, 4 Jun 2019 10:43:52 -0700	116 lines
[git/dxtbx] master: For #35 - module sizes (b21bf4c)	DXTBX commit	Tue, 4 Jun 2019 09:00:54 +0100	500 lines
[git/cctbx_project] master: Typo, thx Nigel. With test. (11ffac1532)	CCTBX commit	Mon, 3 Jun 2019 17:44:13 -0700	355 lines
[git/cctbx_project] master: ProgramTemplate: minor changes (96d14adbbe)	CCTBX commit	Mon, 3 Jun 2019 17:25:09 -0700	122 lines
[git/cctbx_project] master: NBOs: Cleanup. (f0260b9ef4)	CCTBX commit	Mon, 3 Jun 2019 17:21:03 -0700	181 lines
[git/dxtbx] master: nearly nexus 16M support (e0d39b8)	DXTBX commit	Mon, 3 Jun 2019 16:50:22 -0700	103 lines
[git/cctbx_project] master: mmCIF output: speed improvements: (5ff7e8e47a)	CCTBX commit	Mon, 3 Jun 2019 16:48:58 -0700	228 lines
[git/cctbx_project] master: mmCIF output: keep for loops from input file (e8300349b6)	CCTBX commit	Mon, 3 Jun 2019 15:20:40 -0700	165 lines
[git/cctbx_project] master: restored printing of program template output to stderr in several validations (2b6f3600bf)	CCTBX commit	Mon, 3 Jun 2019 17:23:13 -0400	355 lines
[git/cctbx_project] master: Merge branch 'mmCIF-label_asym_id-fix' of github.com:cctbx/cctbx_project into mmCIF-label_asym_id-fix (a52f2ac3ef)	CCTBX commit	Mon, 3 Jun 2019 13:04:50 -0700	63 lines
[git/cctbx_project] master: Assert non-empty auth_asym_id, remove test with incorrect pdb file handling. (5efb876b54)	CCTBX commit	Mon, 3 Jun 2019 13:04:21 -0700	214 lines
[git/cctbx_project] master: Start for label_asym_id corrections (d662750452)	CCTBX commit	Mon, 3 Jun 2019 13:02:40 -0700	597 lines
[git/cctbx_project] master: Assert non-empty auth_asym_id, remove test with incorrect pdb file handling. (6615ecfc8f)	CCTBX commit	Mon, 3 Jun 2019 12:17:56 -0700	214 lines
[git/cctbx_project] master: switch to auth_asym_id to determine chain split. Cleanup and adjust tests. (7e88b20f81)	CCTBX commit	Mon, 3 Jun 2019 11:22:06 -0700	250 lines
[git/cctbx_project] master: Bug fix: case when atom A is not bonded to any other atom, and a test. (6a4ee4bce9)	CCTBX commit	Mon, 3 Jun 2019 21:20:20 +0800	377 lines
[git/cctbx_project] master: Add new CL tool: phenix.hbond (523e22c105)	CCTBX commit	Mon, 3 Jun 2019 20:46:32 +0800	187 lines
[git/cctbx_project] master: Add place holder for phil (d3105df9c8)	CCTBX commit	Mon, 3 Jun 2019 20:44:24 +0800	93 lines
[git/cctbx_project] master: Add to run list. Add tests for external proxies. (dac7f9d898)	CCTBX commit	Mon, 3 Jun 2019 20:19:06 +0800	782 lines
[git/cctbx_project] master: Allow external proxies as a reference; minor refactoring to allow this. (fc9bc4b5a8)	CCTBX commit	Mon, 3 Jun 2019 19:40:55 +0800	341 lines
[git/cctbx_project] master: Make use of Y atom; add more specific tests; output cmd file for PyMol to show H bond dashes. (cc771fcf1a)	CCTBX commit	Mon, 3 Jun 2019 13:33:30 +0800	95 lines
[git/cctbx_project] master: Make use of Y atom; add more specific tests; output cmd file for PyMol to show H bond dashes. (867f569e8b)	CCTBX commit	Mon, 3 Jun 2019 13:28:36 +0800	767 lines
[git/cctbx_project] master: remove unused import (0591b3b9be)	CCTBX commit	Sun, 2 Jun 2019 17:38:41 +0800	82 lines
[git/cctbx_project] master: Clean, rationalize, make symmetry-aware (42724c08d3)	CCTBX commit	Sun, 2 Jun 2019 17:04:32 +0800	1273 lines
[git/dxtbx] master: register all format classes using entry points #26 (8e77cf1)	DXTBX commit	Sun, 2 Jun 2019 00:39:54 +0100	217 lines
[git/dxtbx] master: Ignore errors on deallocation (eaa87d5)	DXTBX commit	Sun, 2 Jun 2019 00:15:36 +0100	143 lines
[git/cctbx_project] master: NBO: dont check for inline config for sym overlaps. (b1eb0a043f)	CCTBX commit	Fri, 31 May 2019 20:57:11 -0700	166 lines
[git/cctbx_project] master: Nope, PDB shows question mark there (828cf901cb)	CCTBX commit	Fri, 31 May 2019 18:02:01 -0700	97 lines
[git/cctbx_project] master: Hopefully a fix. Also changed ? to . for empty insertion code. Couple of more tests fails because of this. Easy fix if we'll choose to stick with '.' (74537f617d)	CCTBX commit	Fri, 31 May 2019 17:56:37 -0700	149 lines
[git/cctbx_project] master: NBO: avoid counting sym clashes twice. (df4f335314)	CCTBX commit	Fri, 31 May 2019 16:42:23 -0700	106 lines
[git/cctbx_project] master: Error in hierarchy cif output. Moreover, .show() seems to modify block itself. Needs investigation. (b4c088946e)	CCTBX commit	Fri, 31 May 2019 16:08:07 -0700	171 lines
[git/cctbx_project] master: NBOs remove unused imports. (ad5874086a)	CCTBX commit	Fri, 31 May 2019 16:06:25 -0700	103 lines
[git/cctbx_project] master: NBOs: place H atoms with readyset. (b03f6697c6)	CCTBX commit	Fri, 31 May 2019 16:04:28 -0700	390 lines
[git/cctbx_project] master: alpha working version of labal_asym_id generator (c3ae5169cf)	CCTBX commit	Thu, 30 May 2019 11:34:50 -0700	207 lines
[git/cctbx_project] master: Merge branch 'mmCIF-label_asym_id-fix' of github.com:cctbx/cctbx_project into mmCIF-label_asym_id-fix not completely clear... (723e44e554)	CCTBX commit	Thu, 30 May 2019 11:33:33 -0700	65 lines
[git/cctbx_project] master: Start for label_asym_id corrections (651dde8ac0)	CCTBX commit	Thu, 30 May 2019 09:41:42 -0700	252 lines
[git/cctbx_project] master: Start for label_asym_id corrections (bbdf76bef8)	CCTBX commit	Tue, 28 May 2019 16:38:40 -0700	252 lines

CCTBX-COMMIT Archives

June 2019

Options

Subject

From

Date

Size

JiscMail Tools

RSS Feeds and Sharing

Search Archives

Archives