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[git/cctbx] master: streamlined processor and UI changes (14f6e3384)
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Thu, 29 Nov 2018 19:28:43 -0800 |
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[git/cctbx] master: Changes to xtc_process and mp.py (50f14c586)
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Thu, 29 Nov 2018 17:18:45 -0800 |
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[git/cctbx] master: Model viewer fix for Windows (ea70af165)
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Thu, 29 Nov 2018 15:59:56 -0800 |
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[git/cctbx] master: fixing XML bug flagged by eLBOW test (cbbc14fad)
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Thu, 29 Nov 2018 13:15:20 -0800 |
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[git/cctbx] master: substitute missing minor version and patchlevel for gcc7 that comes with Ubuntu18 (3b60d29d5)
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Thu, 29 Nov 2018 12:51:49 +0000 |
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[git/cctbx] master: remove LZW test (41ea019f1)
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Wed, 28 Nov 2018 15:31:47 -0800 |
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[git/cctbx] master: bugfix (9f7298643)
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Wed, 28 Nov 2018 15:02:45 -0800 |
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[git/cctbx] master: Bugfix in adding bonds to GRM. With test. (8ed8b505e)
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Wed, 28 Nov 2018 15:02:45 -0800 |
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[git/cctbx] master: set box solvent fraction if necessary (33d11666f)
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Wed, 28 Nov 2018 15:01:58 -0800 |
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[git/cctbx] master: Add psutil and mrcfile as dependencies (124d02549)
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Wed, 28 Nov 2018 12:42:29 -0800 |
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Jenkins 5b cctbx MacOS build 3263 Fixed
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Wed, 28 Nov 2018 08:28:18 +0000 |
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[git/cctbx] master: Since LZW code was moved into ELBOW is no longer here to be tested; fixes #265; suggest move tst_lzw.py to elbow? (0005b5814)
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Wed, 28 Nov 2018 08:08:04 +0000 |
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Jenkins 5b cctbx MacOS build 3262 Unstable
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Wed, 28 Nov 2018 03:54:20 +0000 |
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[git/cctbx] master: moved lzw to eLBOW (161603069)
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Tue, 27 Nov 2018 18:10:46 -0800 |
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[git/cctbx] master: Add minimal conda environments for macOS 64-bit (67c8195f2)
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Tue, 27 Nov 2018 16:41:03 -0800 |
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[git/cctbx] master: Add minimal conda environments for Linux 64-bit (5ad0bfb1f)
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Tue, 27 Nov 2018 16:29:57 -0800 |
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[git/cctbx] master: Add minimal conda environments for Windows 64-bit (1f461e569)
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Tue, 27 Nov 2018 16:12:14 -0800 |
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[git/cctbx] master: hide debug printout (3664d6ddf)
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Tue, 27 Nov 2018 14:22:40 -0800 |
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[git/cctbx] master: Some rationalization and comments (f0701737e)
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Tue, 27 Nov 2018 14:02:35 -0800 |
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[git/cctbx] master: libtbx: Python 2/3 macOS changes (a8c1a4e60)
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Tue, 27 Nov 2018 13:15:56 -0800 |
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[git/cctbx] master: Allowing the extraction of two chain letter ids from cif in the HHSearch_parser (226a385d7)
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Tue, 27 Nov 2018 17:53:34 +0000 |
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[git/cctbx] master: remove unused code (a4b109430)
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Tue, 27 Nov 2018 10:46:01 -0700 |
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[git/cctbx] master: Handling anomalous input data. (f97eb2047)
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Mon, 26 Nov 2018 14:23:40 -0800 |
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[git/cctbx] master: get xray_structure automatically if set_sites_cart is called (fccccac06)
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Sun, 25 Nov 2018 20:31:25 -0700 |
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[git/cctbx] master: Register flex arrays as Sequences and Iterables (dcd3d96ef)
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Thu, 22 Nov 2018 09:36:52 +0000 |
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[git/cctbx] master: Add max_distance_between_any_pair_with_id (1802a5b25)
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Wed, 21 Nov 2018 20:14:11 -0700 |
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[git/cctbx] master: bugfixes to IOTA and PRIME GUIs (0c304a2d6)
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Wed, 21 Nov 2018 17:57:09 -0800 |
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[git/cctbx] master: Revert "wxPython 3/4 compatibility" (efadc76e6)
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Wed, 21 Nov 2018 15:43:24 -0800 |
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[git/cctbx] master: List prime as an optional dependency of xfel. (da4a93b77)
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Wed, 21 Nov 2018 14:00:41 -0800 |
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[git/cctbx] master: Bugfix for cbf_writer (cbb6444bf)
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Wed, 21 Nov 2018 13:00:40 -0800 |
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[git/cctbx] master: FormatXTC.get_raw_data significant speedup (0d2293df2)
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Wed, 21 Nov 2018 11:24:53 -0800 |
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[git/cctbx] master: Fix handling of the Rayonx MX340 at MFX, including support in old code. (373e833c8)
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Wed, 21 Nov 2018 11:02:36 -0800 |
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[git/cctbx] master: Add exercise_worker boilerplate and use it in __main__ of simple file loader and polarization (9ae8ca1a1)
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Wed, 21 Nov 2018 09:33:36 -0800 |
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[git/cctbx] master: For dials/dials#653 also record the fact that hdf5-derived file names are image types; this time correctly (cae1c2479)
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Wed, 21 Nov 2018 10:07:45 +0000 |
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[git/cctbx] master: For dials/dials#653 also record the fact that hdf5-derived file names are image types (2f4b2101c)
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Wed, 21 Nov 2018 10:04:51 +0000 |
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[git/cctbx] master: Hook in the modify step. Factories are discovered and loaded automatically. (b38107e6f)
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Tue, 20 Nov 2018 10:51:57 -0800 |
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[git/cctbx] master: Refactor polarization correction to use worker/factory interface (aee59706e)
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Tue, 20 Nov 2018 10:50:51 -0800 |
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[git/cctbx] master: Skeleton for new xfel merging application (a2d800018)
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Tue, 20 Nov 2018 10:30:57 -0800 |
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[git/cctbx] master: Revert "added wxPython version check for wx.BrushStyle" (fd370299d)
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Tue, 20 Nov 2018 10:15:18 -0800 |
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[git/cctbx] master: Revert "reverted some unnecessary reformatting" (b9daa4b34)
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Tue, 20 Nov 2018 10:15:16 -0800 |
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[git/cctbx] master: Revert "reverted to subclass MetallicButton from wx.PyControl" (d0698ba9b)
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Tue, 20 Nov 2018 10:15:13 -0800 |
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[git/cctbx] master: Revert "version check for graphics context, and fixed label font setting" (e486f1839)
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Tue, 20 Nov 2018 10:15:02 -0800 |
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[git/cctbx] master: Revert "a general set of wxPython 3/4 compatibility tools" (68c28f9fe)
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Tue, 20 Nov 2018 09:59:13 -0800 |
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[git/cctbx] master: reverted to subclass MetallicButton from wx.PyControl (9faf87a68)
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Tue, 20 Nov 2018 09:57:16 -0800 |
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[git/cctbx] master: de-cluttered (7344a617b)
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Tue, 20 Nov 2018 09:57:16 -0800 |
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[git/cctbx] master: reverted some unnecessary reformatting (25671b402)
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Tue, 20 Nov 2018 09:57:16 -0800 |
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[git/cctbx] master: added wxPython version check for wx.BrushStyle (47f18d02a)
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Tue, 20 Nov 2018 09:57:16 -0800 |
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[git/cctbx] master: a general set of wxPython 3/4 compatibility tools (c226793bc)
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Tue, 20 Nov 2018 09:57:16 -0800 |
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[git/cctbx] master: version check for graphics context, and fixed label font setting (c1fdcee15)
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Tue, 20 Nov 2018 09:57:16 -0800 |
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[git/cctbx] master: wxPython 3/4 compatibility (b45a4fda5)
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Tue, 20 Nov 2018 09:57:16 -0800 |
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[git/cctbx] master: wxPython 4 compatibility (983ae61af)
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Tue, 20 Nov 2018 09:12:52 -0800 |
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[git/cctbx] master: Python 3.7 makes async/await reserved keywords (ee6fd3ece)
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Tue, 20 Nov 2018 14:22:41 +0000 |
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[git/cctbx] master: dxtbx conftest: Handle duplicate adding of option (40a560eec)
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Tue, 20 Nov 2018 13:57:10 +0000 |
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[git/cctbx] master: moved the determination of restraints used to pdb_inp and mmcif_inp (4efc7a933)
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Mon, 19 Nov 2018 13:38:03 -0800 |
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[git/cctbx] master: For folks at SACLA who dont run cheetah. Updated the class to ensure assemebled_data is in the file, and handles the case where the dataset is non-square (just in case). This came up because I created a fake-sacla hdf5 with a non-square dataset and this caused error in imageset.h because a fake gain is created according to the detector, but get_raw_data is allowed to return a shape other than detector which in this case was incorrect.. Probably get_raw_data should ensure it returns an object that agrees with the detector definition) (837574dd6)
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Mon, 19 Nov 2018 12:37:08 -0800 |
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[git/cctbx] master: Renamed merger_mpi.py to merger.py: if mpi4py is not installed, the merger would run in a single process. (3c805f75e)
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Mon, 19 Nov 2018 12:14:46 -0800 |
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Jenkins 5b cctbx MacOS build 3229 Fixed
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Mon, 19 Nov 2018 17:14:09 +0000 |
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[git/cctbx] master: dxtbx; remove .at() call in scan.h, fix compiler warning in scan.h (d0002a786)
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Mon, 19 Nov 2018 16:51:25 +0000 |
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Jenkins 5b cctbx MacOS build 3228 Unstable
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Mon, 19 Nov 2018 07:03:52 +0000 |
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[git/cctbx] master: Add more controls over Ramachandran plot quality and styles. Delete unused parameters. (9e5707874)
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Mon, 19 Nov 2018 14:42:14 +0800 |
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[git/cctbx] master: Fix typo (c88776f32)
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Fri, 16 Nov 2018 19:15:47 -0800 |
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[git/cctbx] master: Initial conda environments for testing (8fffd6c4f)
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Fri, 16 Nov 2018 19:14:18 -0800 |
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[git/cctbx] master: Bugfix (2dfc53cb0)
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Fri, 16 Nov 2018 17:04:20 -0800 |
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[git/cctbx] master: Avoid race condition in fable/test/tst_io.py. (c4e924343)
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Fri, 16 Nov 2018 16:38:59 -0800 |
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[git/cctbx] master: 2to3 compatibility. Fable. All tests pass. All Fable tests pass in the libtbx.run_tests_parallel framework, both in Python 2.7 and Python 3.6. The vv_cmp compare function has not been completely migrated to Python 3. A workaround is in place that will need to be revisited with a more comprehensive test. (61c6565f3)
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Fri, 16 Nov 2018 16:38:59 -0800 |
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[git/cctbx] master: 2to3 compatibility. Syntax. (5f9e825ec)
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Fri, 16 Nov 2018 16:38:59 -0800 |
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[git/cctbx] master: Rebase Fable. 2to3 compatibility. (7a546edb4)
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Fri, 16 Nov 2018 16:38:59 -0800 |
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[git/cctbx] master: 2to3 compatibility. Issue first encountered with fable test. (84450196c)
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Fri, 16 Nov 2018 16:38:59 -0800 |
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[git/cctbx] master: Instructions for Python3.6 / Linux / conda FABLE install. (7132f1897)
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Fri, 16 Nov 2018 16:38:59 -0800 |
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[git/cctbx] master: Bugfix. (03d4a66f9)
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Fri, 16 Nov 2018 12:57:31 -0800 |
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[git/cctbx] master: segfault bugfix (566dc593f)
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Fri, 16 Nov 2018 10:14:54 -0800 |
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[git/cctbx] master: In dxtbx.model.scan, update data structure of valid_image_ranges (8892686f5)
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Thu, 15 Nov 2018 14:41:10 +0000 |
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[git/cctbx] master: Add a valid_image_ranges dict to the scan object. (bf450c889)
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Thu, 15 Nov 2018 14:41:10 +0000 |
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[git/cctbx] master: Changes to new merging application (378259e1d)
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Wed, 14 Nov 2018 14:40:38 -0800 |
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[git/cctbx] master: libtbx: Python 2/3 test change (3f83a9a13)
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Wed, 14 Nov 2018 13:42:41 -0800 |
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[git/cctbx] master: sensor_active_areas: a method to give the list of active modules / pixels - appreciate this contains hard coding of module sizes but this is relatively well known and a short list (8d5b6a9d2)
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Wed, 14 Nov 2018 15:20:33 +0000 |
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[git/cctbx] master: enable altloc corner case (37677e209)
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Tue, 13 Nov 2018 12:45:55 -0800 |
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[git/cctbx] master: For DiamondLightSource/fast_dp#26 add mask regions for Eiger detectors (f366b8c03)
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Tue, 13 Nov 2018 07:54:48 +0000 |
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[git/cctbx] master: libtbx: Python 2/3 str change (3269c16f5)
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Mon, 12 Nov 2018 15:01:24 -0800 |
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[git/cctbx] master: removed errant assert (26ef4dbf9)
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Mon, 12 Nov 2018 09:29:04 -0800 |
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[git/cctbx] master: flex.histogram: add .as_str() method to avoid the need to do the StringIO song and dance to get hold of the output of .show() as a string (2b4a32830)
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Mon, 12 Nov 2018 16:09:58 +0000 |
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[git/cctbx] master: define tools when using VC2017 compiler (e67f48ee8)
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Mon, 12 Nov 2018 13:58:46 +0000 |
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[git/cctbx] master: Propagate log. Use same number of didits in pdb and log. Remove unconditional printing. (1bfa583b1)
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Sun, 11 Nov 2018 13:24:25 +0800 |
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[git/cctbx] master: libtbx: Python 2/3 update known syntax violations (63e5a6ee4)
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Fri, 9 Nov 2018 19:27:42 -0800 |
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[git/cctbx] master: libtbx: Python 2/3 libtbx.run_tests_parallel change (f54845483)
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Fri, 9 Nov 2018 19:11:38 -0800 |
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[git/cctbx] master: libtbx: Python 2/3 libtbx.run_tests_parallel change (79437a526)
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Fri, 9 Nov 2018 18:37:19 -0800 |
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[git/cctbx] master: Use boilerplate first import line. (d4844a711)
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Fri, 9 Nov 2018 16:34:27 -0800 |
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[git/cctbx] master: libtbx: add check for six and future modules during configuration (520185b20)
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Fri, 9 Nov 2018 11:02:13 -0800 |
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[git/cctbx] master: MI: show starting rama outliers (9210a82a5)
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Fri, 9 Nov 2018 10:36:15 -0800 |
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[git/cctbx] master: Allow empty arg (76d99214d)
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Fri, 9 Nov 2018 06:48:31 +0000 |
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[git/cctbx] master: libtbx: Python 2/3 easy_mp.py changes (f80ef2c9f)
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Thu, 8 Nov 2018 18:25:05 -0800 |
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[git/cctbx] master: libtbx: Python 2/2 table_utils changes (20a8f781c)
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Thu, 8 Nov 2018 16:04:17 -0800 |
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[git/cctbx] master: Support for Rayonix MX340 at MFX beamline (659137d64)
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Thu, 8 Nov 2018 15:32:23 -0800 |
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[git/cctbx] master: removed obsolete code from omegalyze (1e26dfa24)
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Thu, 8 Nov 2018 15:21:23 -0500 |
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[git/cctbx] master: omegalyze should only report alts when an atom involved in the peptide dihedral has an alt (68ce0397f)
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Thu, 8 Nov 2018 15:19:42 -0500 |
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[git/cctbx] master: libtbx: Python 2/3 separate tests with injection (587bfad37)
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Thu, 8 Nov 2018 10:29:24 -0800 |
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Jenkins CCTBX Branch Tests branch origin/flex-sequence Still Unstable
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Thu, 8 Nov 2018 14:18:31 +0000 |
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Jenkins CCTBX Branch Tests branch origin/flex-sequence Still Unstable
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Thu, 8 Nov 2018 12:16:20 +0000 |
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Jenkins CCTBX Branch Tests branch origin/flex-sequence Unstable
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Thu, 8 Nov 2018 12:08:23 +0000 |
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[git/cctbx] master: more magic Eiger stream spells (62055a207)
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Thu, 8 Nov 2018 10:56:07 +0000 |
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[git/cctbx] master: suspect this is the correct magic spell for streaming eigers (23ccb7449)
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Thu, 8 Nov 2018 09:41:08 +0000 |
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[git/cctbx] master: allow_incomplete_sweeps=True will switch off checking that the images are all there; fixes #255 (b0bbcd51c)
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Thu, 8 Nov 2018 08:42:00 +0000 |
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[git/cctbx] master: libtbx: Python 2/3 cluster changes (fa880cd58)
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Wed, 7 Nov 2018 18:22:15 -0800 |
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[git/cctbx] master: Make RSR correctly show NCS groups used after filtering. (3baa2da65)
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Wed, 7 Nov 2018 17:43:10 -0800 |
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[git/cctbx] master: Adding DevNull option for loggingdir (8aa3dd220)
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Wed, 7 Nov 2018 16:37:36 -0800 |
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[git/cctbx] master: libtbx: Python 2/3 remove string module (987554cd8)
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Wed, 7 Nov 2018 16:32:48 -0800 |
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Jenkins 5a cctbx Tests build 7498 Fixed
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Wed, 7 Nov 2018 23:38:25 +0000 |
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[git/cctbx] master: Patch bitshuffle installation: (2feba36ec)
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Wed, 7 Nov 2018 15:35:22 -0800 |
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[git/cctbx] master: Update test for citation change (1b561ae74)
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Wed, 7 Nov 2018 14:31:43 -0800 |
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Jenkins 5a cctbx Tests build 7496 Unstable
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Wed, 7 Nov 2018 21:56:37 +0000 |
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[git/cctbx] master: updated omegalyze to use multi-redidue objects to manage alts (c6f5dc261)
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Wed, 7 Nov 2018 16:08:47 -0500 |
860 lines |
[git/cctbx] master: added citations for upcoming validation tutorials (35923d9f9)
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Wed, 7 Nov 2018 15:51:14 -0500 |
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[git/cctbx] master: clean x_x clutter (34487430e)
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Wed, 7 Nov 2018 17:58:27 +0000 |
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[git/cctbx] master: Working on EigerStream format class, SCI-7786 (64e24aae5)
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Wed, 7 Nov 2018 17:46:15 +0000 |
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[git/cctbx] master: Add docstring to import_all_ext (7ab930cfb)
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Tue, 6 Nov 2018 16:32:14 -0800 |
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[git/cctbx] master: molprobity: change default value for clashes (d75bbc6a3)
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Tue, 6 Nov 2018 14:09:56 -0800 |
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[git/cctbx] master: libtbx: Python 2/3 LZW changes (48f9b9069)
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Tue, 6 Nov 2018 11:17:23 -0800 |
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[git/cctbx] master: Reduce output and bugfix (d60525001)
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Tue, 6 Nov 2018 09:40:24 -0800 |
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[git/cctbx] master: Sync with interface change in stills process to enable bread crumb logging (3e2b96b92)
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Tue, 6 Nov 2018 09:24:21 -0800 |
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[git/cctbx] master: Fix overlooked step control in gradient_only mode. (00dc58515)
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Tue, 6 Nov 2018 09:47:51 +0800 |
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[git/cctbx] master: Bug fix: count atoms, not residues (aa8dc49b7)
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Tue, 6 Nov 2018 09:06:43 +0800 |
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[git/cctbx] master: fix output glitch (a01d46a25)
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Tue, 6 Nov 2018 09:06:43 +0800 |
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[git/cctbx] master: Update show_env to know the object names (d554c7b41)
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Tue, 6 Nov 2018 00:31:05 +0000 |
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[git/cctbx] master: small changes to better reflect gaps in protein chain (9892504f6)
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Mon, 5 Nov 2018 15:01:19 -0800 |
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[git/cctbx] master: libtbx: Python 2/3 citations changes (f7f9cbed2)
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Mon, 5 Nov 2018 13:54:40 -0800 |
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[git/cctbx] master: cleaned clutter (d9f6c0c69)
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Mon, 5 Nov 2018 11:21:15 -0800 |
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[git/cctbx] master: generalized image handling (db0b6068e)
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Mon, 5 Nov 2018 10:55:40 -0800 |
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[git/cctbx] master: Allow setting mean to zero in masked map (1609ea298)
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Sun, 4 Nov 2018 12:05:47 -0700 |
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[git/cctbx] master: libtbx: Python 2/3 PHIL changes (1099b61e6)
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Sat, 3 Nov 2018 22:10:13 -0700 |
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[git/cctbx] master: clarify size of box from maptbx.copy (b1e64ce39)
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Sat, 3 Nov 2018 14:42:52 -0600 |
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[git/cctbx] master: 2to3 compatibility, cctbx.xfel, types (9acff3a36)
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Sat, 3 Nov 2018 12:01:49 -0700 |
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[git/cctbx] master: 2to3 compatibility, cctbx.xfel, xreadlines (2e874252a)
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Sat, 3 Nov 2018 10:11:23 -0700 |
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[git/cctbx] master: 2to3 compatibility, cctbx.xfel and fable, raise (e98afa6f6)
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Sat, 3 Nov 2018 09:41:07 -0700 |
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[git/cctbx] master: 2to3 compatibility, cctbx.xfel, octal literals (650647815)
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Sat, 3 Nov 2018 08:49:21 -0700 |
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[git/cctbx] master: Raise sorry instead of crash (ade06f029)
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Sat, 3 Nov 2018 06:53:15 -0700 |
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[git/cctbx] master: Move nastiness to __init__.py (ish) as may be useful elsewhere (16469b246)
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Sat, 3 Nov 2018 08:44:07 +0000 |
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[git/cctbx] master: as_str option to XDS_INP method; tests for same; very nasty way of coding around the fact that XDS_INP _has_ to write to a file (c92bbaa89)
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Sat, 3 Nov 2018 08:33:23 +0000 |
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[git/cctbx] master: Convention dictates header boiler plate at the top of the file (d6d609cda)
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Sat, 3 Nov 2018 08:33:23 +0000 |
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[git/cctbx] master: libtbx: Python 2/3 unused imports, clutter changes (09c73fcab)
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Fri, 2 Nov 2018 16:59:45 -0700 |
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[git/cctbx] master: libtbx: Python 2/3 changes (99183c094)
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Fri, 2 Nov 2018 15:21:26 -0700 |
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[git/cctbx] master: Remove unnecessary assert. (dd689abbc)
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Fri, 2 Nov 2018 15:01:01 -0700 |
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[git/cctbx] master: Added "from __future__ import division". (5391d05b6)
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Fri, 2 Nov 2018 14:47:56 -0700 |
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[git/cctbx] master: Implemented MPI emulator for a single process. (87ae765b3)
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Fri, 2 Nov 2018 13:54:23 -0700 |
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[git/cctbx] master: Optimized parallel data loading for Cori KNL, implemented MPI emulator for a single process, accelerated adding symmetry-reduced hkl's to the reflection table, improved comments. (dd04c20e6)
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Fri, 2 Nov 2018 13:52:25 -0700 |
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[git/cctbx] master: libtbx: Python 2/3 apply old change (5c97af215)
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Fri, 2 Nov 2018 13:02:08 -0700 |
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[git/cctbx] master: option to use significance_filter in n_subset_method (e6066b606)
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Thu, 1 Nov 2018 16:23:44 -0700 |
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[git/cctbx] master: minor inputs change (e73de9e70)
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Thu, 1 Nov 2018 16:43:07 -0600 |
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[git/cctbx] master: minor inputs change (065bdfeac)
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Thu, 1 Nov 2018 16:38:55 -0600 |
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[git/cctbx] master: Soften dependency on procrunner (4be74e7bc)
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Thu, 1 Nov 2018 22:13:31 +0000 |
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[git/cctbx] master: added parallel option to ligands validation (e9af352fc)
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Thu, 1 Nov 2018 10:09:43 -0700 |
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[git/cctbx] master: really the correct periodicity (b1f7f37b7)
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Thu, 1 Nov 2018 10:09:43 -0700 |
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[git/cctbx] master: Switch CDN (114a29332)
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Thu, 1 Nov 2018 14:16:53 +0000 |
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[git/cctbx] master: Update Python 3 version (c7a3f2d43)
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Thu, 1 Nov 2018 12:53:44 +0000 |
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[git/cctbx] master: Newlines -= 1 (12701ab3b)
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Thu, 1 Nov 2018 11:17:38 +0000 |
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[git/cctbx] master: Remove duplicated names (4b85cad99)
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Thu, 1 Nov 2018 11:13:17 +0000 |
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[git/cctbx] master: Rename license.txt to LICENSE.txt; add newline to allow automated parsing (f3dfbfee0)
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Thu, 1 Nov 2018 11:08:29 +0000 |
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[git/cctbx] master: import code from libtbx instead (1fefa6a45)
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Thu, 1 Nov 2018 09:57:51 +0000 |
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[git/cctbx] master: Enable libtbx test for Python3 regression warnings (33e78810e)
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Thu, 1 Nov 2018 09:45:25 +0000 |
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[git/cctbx] master: Add infrastructure for Python 3 regression test (2c014ebfe)
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Thu, 1 Nov 2018 09:37:27 +0000 |
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