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September 2022


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Date Sorted by Date, Most Recent First

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[git/cctbx_project] master: Get the last written mtz file from xtricorder. Set patterson height threshold for TNCS detection to 10% of origin. (0d7f1cfcb2)

CCTBX commit

Fri, 30 Sep 2022 21:24:57 +0100

180 lines

[git/cctbx_project] master: allow hierarchy or model (9a616d1bcb)

CCTBX commit

Wed, 28 Sep 2022 06:50:09 -0600

95 lines

[git/cctbx_project] master: Fix expected output (bffd691c12)

CCTBX commit

Tue, 27 Sep 2022 12:48:05 -0700

93 lines

[git/cctbx_project] master: Add vrms from pLDDT estimates (f03a49ff35)

CCTBX commit

Tue, 27 Sep 2022 11:44:03 -0600

245 lines

[git/dxtbx] main: DIALS 3.11.2 Changelog (5afb0699)

DXTBX commit

Tue, 27 Sep 2022 15:21:59 +0100

179 lines

[git/dxtbx] main: Clean Clutter (80976ab7)

DXTBX commit

Sun, 25 Sep 2022 05:11:00 +0100

155 lines

[git/cctbx_project] master: Show doc string of test files in the folder where it is run (0ac4bf7df1)

CCTBX commit

Fri, 23 Sep 2022 18:48:15 -0700

200 lines

[git/cctbx_project] master: Fix bug for very small values and full_dynamic_range=True. (843adf84db)

CCTBX commit

Fri, 23 Sep 2022 12:05:49 +0100

111 lines

[git/dxtbx] main: LCLS XFEL updates (#517) (a57215cb)

DXTBX commit

Thu, 22 Sep 2022 15:11:09 -0700

1173 lines

[git/cctbx_project] master: add option --shelx_std_dynamic_range (workaround for #792) (c6a85f5deb)

CCTBX commit

Thu, 22 Sep 2022 14:01:21 -0700

150 lines

[git/cctbx_project] master: clean_clutter (26279aa5ef)

CCTBX commit

Thu, 22 Sep 2022 12:12:57 -0600

61 lines

[git/cctbx_project] master: Add median using precentile_based_spread function (40ea1445af)

CCTBX commit

Thu, 22 Sep 2022 10:13:56 -0700

100 lines

[git/cctbx_project] master: Update submodule xfel/euxfel/definitions to point to nexusformat instead of HDRMX (1172aef2ec)

CCTBX commit

Thu, 22 Sep 2022 09:42:06 -0700

83 lines

[git/cctbx_project] master: libtbx: ignore TypeError for certain GUI updates (01157a148c)

CCTBX commit

Wed, 21 Sep 2022 16:15:58 -0700

91 lines

[git/cctbx_project] master: Update small_cell readme (a74b9f7b09)

CCTBX commit

Wed, 21 Sep 2022 17:51:40 -0400

152 lines

[git/cctbx_project] master: Make sure keep_input_water is used (99d368cc45)

CCTBX commit

Tue, 20 Sep 2022 18:36:50 -0700

89 lines

[git/cctbx_project] master: update (e5bebd8fcb)

CCTBX commit

Tue, 20 Sep 2022 13:06:43 -0700

96 lines

[git/cctbx_project] master: update (08c0f10479)

CCTBX commit

Tue, 20 Sep 2022 12:19:10 -0700

98 lines

[git/cctbx_project] master: Check for division by zero to prevent bug reports. (6a5c5badb0)

CCTBX commit

Mon, 19 Sep 2022 10:56:55 -0700

111 lines

[git/dxtbx] main: Ignore Datablock warnings in tests (#558) (409b3b61)

DXTBX commit

Fri, 16 Sep 2022 11:12:07 +0000

108 lines

[git/dxtbx] main: Use C++14 in the CMake build (#557) (bdf304b8)

DXTBX commit

Fri, 16 Sep 2022 11:47:06 +0100

113 lines

[git/dxtbx] main: Fix DLS-only tests for new trusted range (#556) (a853417d)

DXTBX commit

Fri, 16 Sep 2022 11:12:25 +0100

159 lines

[git/cctbx_project] master: libtbx: also add "src" to PYTHONPATH if it exists (1e98f1a94d)

CCTBX commit

Thu, 15 Sep 2022 11:04:09 -0700

94 lines

[git/cctbx_project] master: changes for gainful, qmr (39ccb3f02a)

CCTBX commit

Thu, 15 Sep 2022 10:54:01 -0700

421 lines

[git/cctbx_project] master: CI: bump XFEL CI macOS vmImage (2f61120084)

CCTBX commit

Thu, 15 Sep 2022 08:36:31 -0700

99 lines

[git/cctbx_project] master: clean clutter (8d029af45c)

CCTBX commit

Thu, 15 Sep 2022 07:09:51 -0700

83 lines

[git/cctbx_project] master: Add option (controlled by make_intermediate_files Boolean in source) to produce data-as-map files that can be used to inspect the signal, the noise and their combination as Dobs weights in Fourier space. (db2f2c9b75)

CCTBX commit

Thu, 15 Sep 2022 14:29:11 +0100

228 lines

[git/cctbx_project] master: Allow quicker sort for percentile_based_spread in cases where very large sample is present (1d990d16b3)

CCTBX commit

Thu, 15 Sep 2022 05:21:01 -0700

254 lines

[git/cctbx_project] master: CI: bump macOS vmImage to match Full build (4e4a95a865)

CCTBX commit

Wed, 14 Sep 2022 21:32:50 -0700

96 lines

[git/cctbx_project] master: Clean clutter (be7c1fc18d)

CCTBX commit

Wed, 14 Sep 2022 17:59:38 -0700

88 lines

[git/cctbx_project] master: remove vestigial mpi.send that should have been removed on switch to alltoall (5c260f5816)

CCTBX commit

Wed, 14 Sep 2022 16:38:13 -0700

94 lines

[git/cctbx_project] master: remove pdb.set_trace() before a Sorry in case of someone other than me using this code (d132ae7377)

CCTBX commit

Wed, 14 Sep 2022 16:35:47 -0700

96 lines

[git/cctbx_project] master: fixes to enable reading h5 files for SwissFEL expt Sept 2022 (f18867ac4c)

CCTBX commit

Wed, 14 Sep 2022 16:32:25 -0700

257 lines

[git/cctbx_project] master: Test clashscore consistency (671f349410)

CCTBX commit

Wed, 14 Sep 2022 15:15:29 -0700

719 lines

[git/cctbx_project] master: save results so they can be accessible in programmatic way. (55b31d8910)

CCTBX commit

Wed, 14 Sep 2022 15:15:28 -0700

116 lines

[git/cctbx_project] master: Do not alter b-factors and occupancy of the model before validation. (1309ef0663)

CCTBX commit

Wed, 14 Sep 2022 15:15:28 -0700

104 lines

[git/cctbx_project] master: README.md: update build variant names (0a2a836e68)

CCTBX commit

Wed, 14 Sep 2022 12:40:56 -0700

401 lines

[git/cctbx_project] master: conda: add quotes around python dependency to avoid sending output to log (8e8c2454ac)

CCTBX commit

Wed, 14 Sep 2022 12:03:25 -0700

101 lines

[git/cctbx_project] master: CI: start testing Xcode 14 (2f6d0a72f7)

CCTBX commit

Wed, 14 Sep 2022 09:46:40 -0700

114 lines

[git/cctbx_project] master: conda: remove extra line in file templates (461c697095)

CCTBX commit

Wed, 14 Sep 2022 09:30:21 -0700

177 lines

[git/cctbx_project] master: Preliminary storing of version number and dispatcher file path for use in other scripts. (585584b3b8)

CCTBX commit

Wed, 14 Sep 2022 16:47:56 +0100

156 lines

[git/dxtbx] main: Correct bad NXmx detector distance sign (#550) (8916daf8)

DXTBX commit

Wed, 14 Sep 2022 15:47:34 +0100

218 lines

[git/dxtbx] main: Remove deprecated set_slow_fast_beam_centre_mm function (#544) (47cc7c8e)

DXTBX commit

Wed, 14 Sep 2022 15:09:15 +0100

143 lines

[git/dxtbx] main: Minor CI dependency updates (#543) (774576ec)

DXTBX commit

Wed, 14 Sep 2022 15:08:48 +0100

127 lines

[git/dxtbx] main: Consistently define trusted_range (#536) (adfe7bcd)

DXTBX commit

Wed, 14 Sep 2022 14:33:14 +0100

263 lines

[git/cctbx_project] master: Also allow a ".jsn" file to be processed as a PAE matrix (ea7e998eb3)

CCTBX commit

Wed, 14 Sep 2022 14:18:29 +0100

90 lines

[git/dxtbx] main: Restrict conda-forge compilers for CI jobs (#554) (947753ed)

DXTBX commit

Wed, 14 Sep 2022 12:38:13 +0100

227 lines

[git/cctbx_project] master: Make regression tests a bit more forgiving to allow for architecture differences. Make the debug mode a bit more helpful. (9d14674af1)

CCTBX commit

Wed, 14 Sep 2022 09:07:17 +0100

171 lines

[git/cctbx_project] master: conda: add script to generate source scripts for installers (1f1c158fa8)

CCTBX commit

Tue, 13 Sep 2022 16:03:26 -0700

394 lines

[git/cctbx_project] master: h5py for Jungfrau detector: check for location of unassembled_data in case of wrong/missing unassembled_data_key (22ae87ec33)

CCTBX commit

Tue, 13 Sep 2022 09:30:34 +0200

113 lines

[git/cctbx_project] master: If no cutout region specified, new default is to cut out the sphere enclosing the ordered density. (dc13e5f885)

CCTBX commit

Mon, 12 Sep 2022 15:58:51 +0100

135 lines

[git/cctbx_project] master: Fix issue where initial signal B-factors are so large they are out of the default range. This is a problem with maps where there are areas with extremely low signal. (be543e02d2)

CCTBX commit

Mon, 12 Sep 2022 12:23:34 +0100

158 lines

[git/dxtbx] main: Clean Clutter (23f28fff)

DXTBX commit

Sun, 11 Sep 2022 05:11:16 +0100

113 lines

[git/cctbx_project] master: switch to alltoall to avoid possible blocking (7e0d704a02)

CCTBX commit

Fri, 9 Sep 2022 20:33:00 -0700

248 lines

[git/dxtbx] main: Add spectrum reading to FormatNXmx, fix noncontiguous mask arrays (#538) (effd664f)

DXTBX commit

Fri, 9 Sep 2022 17:07:48 -0700

1242 lines

[git/dxtbx] main: Add xfailing test for the JF16M (#541) (757b0607)

DXTBX commit

Fri, 9 Sep 2022 16:29:34 -0700

159 lines

[git/cctbx_project] master: Small tweak to relative weight of local Fourier coefficient statistics and overall anisotropic signal model. Add option to produce MTZ files with interesting intermediate data, controlled by changing the write_mtz_files Boolean in the code. (e0d23b0cbe)

CCTBX commit

Fri, 9 Sep 2022 16:41:01 +0100

312 lines

[git/cctbx_project] master: remove unused imports (fbe93bb4e5)

CCTBX commit

Thu, 8 Sep 2022 12:14:17 -0700

90 lines

[git/cctbx_project] master: fix the load balancer and enable verbose mp logging (f7f2feeb61)

CCTBX commit

Thu, 8 Sep 2022 11:26:54 -0700

945 lines

[git/cctbx_project] master: beam_statistics: don't needlessly loop over all experiments (c04fc459b3)

CCTBX commit

Thu, 8 Sep 2022 09:44:49 -0700

103 lines

[git/cctbx_project] master: modify_cosym: handle an mtz anchoring reference (698e5b318f)

CCTBX commit

Thu, 8 Sep 2022 09:42:53 -0700

119 lines

[git/dxtbx] main: dlsnxs2cbf distance and pixel size bug fixes (#548) (88ae8e21)

DXTBX commit

Thu, 8 Sep 2022 11:23:40 +0100

213 lines

[git/cctbx_project] master: Update prepare_map_for_docking to change balance between analytical and local mean analysis of signal in data, in order to improve results from regression test. Also update regression test criteria. (af52f6a00d)

CCTBX commit

Wed, 7 Sep 2022 21:31:32 +0100

205 lines

[git/cctbx_project] master: DataManager: switch model_type to choice(multi=True) (80cc80bee2)

CCTBX commit

Wed, 7 Sep 2022 10:50:32 -0700

384 lines

[git/cctbx_project] master: Major improvement in numerical stability and quality of Dobs estimation. Got rid of ill-conceived renormalisation of local mean intensities. Allow sigmaS to go to zero, which is physically sensible and is now allowed because equation for Dobs has been rearranged to avoid dividing by sigmaS. (94a017bee7)

CCTBX commit

Wed, 7 Sep 2022 16:23:10 +0100

301 lines

[git/cctbx_project] master: Make it python3 compatible (f54cbf4006)

CCTBX commit

Tue, 6 Sep 2022 13:51:03 -0700

177 lines

[git/cctbx_project] master: Make sure flags match (20697dd613)

CCTBX commit

Tue, 6 Sep 2022 12:13:41 -0700

95 lines

[git/cctbx_project] master: CCTBXParser: separate function for handling unused PHIL (8d48526ea9)

CCTBX commit

Tue, 6 Sep 2022 01:40:22 -0700

236 lines

[git/cctbx_project] master: Fix a bug introduced in #5ae04d2955fa (#787) (085f6d8cf5)

CCTBX commit

Tue, 6 Sep 2022 08:31:19 +0200

352 lines

[git/cctbx_project] master: Laue diffuse (#785) (667cb53176)

CCTBX commit

Fri, 2 Sep 2022 14:21:38 -0600

3465 lines

[git/cctbx_project] master: conda: provide more feedback when creating environments (5899a4f684)

CCTBX commit

Fri, 2 Sep 2022 10:54:11 -0700

176 lines

[git/dxtbx] main: DIALS 3.11.1 Changelog (1121c3e6)

DXTBX commit

Fri, 2 Sep 2022 17:13:19 +0100

112 lines

[git/cctbx_project] master: discover custom workers using environment variable (#783) (0c50112b72)

CCTBX commit

Thu, 1 Sep 2022 13:17:10 -0400

247 lines

[git/cctbx_project] master: Update CHANGELOG.rst for 2022.8 release (e543b3ae7e)

CCTBX commit

Thu, 1 Sep 2022 00:11:13 -0700

98 lines

[git/cctbx_project] tag 'v2022.8' created

CCTBX commit

Thu, 1 Sep 2022 00:11:13 -0700

40 lines

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