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May 2021

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Subject	From	Date	Size
[git/cctbx_project] master: README: add nightly test status of current conda-forge package (37bfa5f2f9)	CCTBX commit	Mon, 31 May 2021 12:27:11 -0700	423 lines
[git/cctbx_project] master: Add ABI checks for flex (76ddf1502d)	CCTBX commit	Mon, 31 May 2021 11:37:13 +0100	111 lines
[git/cctbx_project] master: Smarter choice of initials (f82e1e13b8)	CCTBX commit	Sun, 30 May 2021 15:19:11 -0700	233 lines
[git/cctbx_project] master: iotbx: update test for 9a3a2da52d3ef87532342df0fdd5b65f2e261558 (dea49713b5)	CCTBX commit	Sat, 29 May 2021 16:59:21 -0700	96 lines
[git/cctbx_project] master: Make sure start is optimal, bug fixes (b79b0c7136)	CCTBX commit	Sat, 29 May 2021 14:08:53 -0700	891 lines
[git/cctbx_project] master: start with A2013 whole mask (52d17bd0ba)	CCTBX commit	Fri, 28 May 2021 17:52:46 -0700	429 lines
[git/cctbx_project] master: cctbx doc: remove phil txt (transferred to new page) (22768b018a)	CCTBX commit	Fri, 28 May 2021 08:39:30 -0700	2970 lines
[git/cctbx_project] master: bugfix: actually do count altlocs (9a3a2da52d)	CCTBX commit	Thu, 27 May 2021 18:14:05 -0700	90 lines
[git/cctbx_project] master: Experimental sub-version of algorithm 'a' (d7eea0781a)	CCTBX commit	Thu, 27 May 2021 18:14:05 -0700	742 lines
[git/cctbx_project] master: CI: retry downloads when a 503 error is encountered (86caf58931)	CCTBX commit	Thu, 27 May 2021 11:39:16 -0700	99 lines
[git/cctbx_project] master: XFEL GUI: tooltips for run stats and unit cell tabs (52d5ee6f7f)	CCTBX commit	Thu, 27 May 2021 10:47:00 -0700	549 lines
[git/cctbx_project] master: XFEL GUI: update about/help menu (fac4c699f6)	CCTBX commit	Thu, 27 May 2021 09:15:07 -0700	209 lines
[git/cctbx_project] master: added tutorial help menu item (bc2d5ae958)	CCTBX commit	Thu, 27 May 2021 17:02:26 +0100	418 lines
[git/dxtbx] main: DIALS 3.5.0 Changelog (63a96252)	DXTBX commit	Thu, 27 May 2021 15:16:04 +0100	529 lines
[git/cctbx_project] master: Clean clutter (20d41ffe0d)	CCTBX commit	Wed, 26 May 2021 14:13:48 -0700	89 lines
[git/cctbx_project] master: Update README.md (49000953d9)	CCTBX commit	Wed, 26 May 2021 13:54:54 -0700	168 lines
[git/cctbx_project] master: cctbx doc: add new example script (LBFGS) (23e4810db0)	CCTBX commit	Wed, 26 May 2021 12:25:48 -0700	1130 lines
[git/cctbx_project] master: XFEL GUI: tooltips for main GUI, trials, and run groups (84050d7377)	CCTBX commit	Tue, 25 May 2021 14:53:21 -0700	724 lines
[git/cctbx_project] master: XFEL GUI: rest of the settings dialog tooltips (8d14c1caa8)	CCTBX commit	Tue, 25 May 2021 12:31:30 -0700	634 lines
[git/cctbx_project] master: XFEL GUI: Advanced settings dialog tooltips (342d5e05c2)	CCTBX commit	Tue, 25 May 2021 12:01:47 -0700	1363 lines
[git/cctbx_project] master: Rest of the settings dialog tooltips (90448ee601)	CCTBX commit	Tue, 25 May 2021 11:11:31 -0700	367 lines
[git/cctbx_project] master: Where possible, we can look up help strings from the phil parameters (b36a16a4e7)	CCTBX commit	Tue, 25 May 2021 10:51:44 -0700	101 lines
[git/cctbx_project] master: XFEL GUI: tooltip infrastructure (acf5b847e9)	CCTBX commit	Tue, 25 May 2021 10:39:44 -0700	680 lines
[git/dxtbx] main: Move tests to test dir (#360) (b65f63c7)	DXTBX commit	Mon, 24 May 2021 16:56:24 +0100	83 lines
[git/cctbx_project] master: CI: add template for download data cache (413cfb0bf5)	CCTBX commit	Sun, 23 May 2021 18:49:49 -0700	404 lines
[git/cctbx_project] master: CI: reorganize template (6c3660b061)	CCTBX commit	Sun, 23 May 2021 17:18:43 -0700	740 lines
[git/cctbx_project] master: Bugfix: use default grid step in A2013 (0a6c79c12c)	CCTBX commit	Sun, 23 May 2021 13:56:20 -0700	102 lines
[git/cctbx_project] master: CI: move resources section (24112d49c1)	CCTBX commit	Sun, 23 May 2021 12:18:44 -0700	128 lines
[git/cctbx_project] master: CI: create data cache template for external use (1cd43b89ab)	CCTBX commit	Sun, 23 May 2021 12:00:21 -0700	733 lines
[git/cctbx_project] master: clean clutter (2f993ef5fe)	CCTBX commit	Fri, 21 May 2021 19:24:38 -0700	111 lines
[git/cctbx_project] master: Keep track of intermediate results and choose the best one! (c91d32569f)	CCTBX commit	Fri, 21 May 2021 17:24:57 -0700	175 lines
[git/cctbx_project] master: Creat AEV branch and test (#613) (f4904b4b7d)	CCTBX commit	Fri, 21 May 2021 17:11:52 -0700	913 lines
[git/cctbx_project] master: fix model creation (e03234fb00)	CCTBX commit	Fri, 21 May 2021 16:21:36 -0700	138 lines
[git/cctbx_project] master: Always compute mask and Fmask up to 3A, then inflate arrays with 0 (c8dc5b8ac9)	CCTBX commit	Fri, 21 May 2021 16:21:36 -0700	380 lines
[git/cctbx_project] master: bootstrap: Phenix builder uses Boost in environment for Python 3 (94ce3e68ad)	CCTBX commit	Thu, 20 May 2021 22:52:54 -0700	111 lines
Jenkins 5a cctbx Linux build 1239 Fixed	DLS Jenkins	Thu, 20 May 2021 06:41:35 +0100	42 lines
Jenkins 5a cctbx Linux build 1238 Unstable	DLS Jenkins	Wed, 19 May 2021 19:58:38 +0100	48 lines
[git/cctbx_project] master: voyager build: use conda environment files in phasertng rather than phaser repo (1f1a2627ae)	CCTBX commit	Wed, 19 May 2021 12:51:29 +0100	101 lines
[git/cctbx_project] master: more fixes (9545eda81e)	CCTBX commit	Tue, 18 May 2021 15:49:28 -0700	115 lines
[git/cctbx_project] master: Several performance improvements (83aaacd09e)	CCTBX commit	Tue, 18 May 2021 15:36:12 -0700	286 lines
[git/cctbx_project] master: Timer object can be used in a 'with' statement. (523957f959)	CCTBX commit	Tue, 18 May 2021 11:24:47 -0700	91 lines
[git/cctbx_project] master: skip iotbx remote test if network connection flaky (31b6bdef1d)	CCTBX commit	Tue, 18 May 2021 08:52:41 +0100	104 lines
Jenkins 5a cctbx Linux build 1231 Fixed	DLS Jenkins	Tue, 18 May 2021 06:41:35 +0100	41 lines
[git/cctbx_project] master: uncomment the debugging stuff (912862fdf9)	CCTBX commit	Mon, 17 May 2021 17:30:58 -0700	345 lines
[git/cctbx_project] master: First stub (9a2e38336b)	CCTBX commit	Mon, 17 May 2021 17:30:58 -0700	1849 lines
Jenkins 5a cctbx Linux build 1229 Unstable	DLS Jenkins	Sun, 16 May 2021 11:42:55 +0100	52 lines
Jenkins 5a cctbx Linux build 1228 Fixed	DLS Jenkins	Sun, 16 May 2021 06:41:59 +0100	41 lines
[git/cctbx_project] master: use file (d223dfca89)	CCTBX commit	Sat, 15 May 2021 16:24:35 -0700	91 lines
[git/cctbx_project] master: refactor and use optimal defaults (3c253edaa5)	CCTBX commit	Sat, 15 May 2021 16:08:38 -0700	650 lines
[git/cctbx_project] master: bootstrap: enable Python 3.9 conda environments (8ce0191b73)	CCTBX commit	Fri, 14 May 2021 16:57:01 -0700	143 lines
[git/cctbx_project] master: Allow xfel_process to run if db logging not enabled (dec50bed30)	CCTBX commit	Fri, 14 May 2021 22:11:55 +0200	114 lines
[git/cctbx_project] master: Revert "Can't use nonlocal (py2)" and instead add xfel/ui/db/dxtbx_db.py to py2 syntax check exceptions list (2220d963d7)	CCTBX commit	Fri, 14 May 2021 18:19:42 +0200	209 lines
[git/dxtbx] main: Update cctbx used for testing to 2021.4 release (#364) (a10281ac)	DXTBX commit	Fri, 14 May 2021 14:21:20 +0100	102 lines
[git/dxtbx] main: Add support for Python 3.9 (#365) (64ed08b4)	DXTBX commit	Fri, 14 May 2021 14:20:58 +0100	248 lines
[git/dxtbx] main: Remove references to six and future (#357) (4ef35cc4)	DXTBX commit	Fri, 14 May 2021 14:19:35 +0100	791 lines
[git/cctbx_project] master: Can't use nonlocal (py2) (aea4869f7e)	CCTBX commit	Fri, 14 May 2021 03:56:08 +0200	187 lines
[git/cctbx_project] master: XFEL GUI: re-write of the xfel gui database logging to use transactions (4e9fc766c4)	CCTBX commit	Fri, 14 May 2021 02:50:38 +0200	975 lines
[git/cctbx_project] master: XFEL GUI: add ability to specify extra job submisison arguments (8026db6da1)	CCTBX commit	Thu, 13 May 2021 19:42:17 +0200	496 lines
[git/cctbx_project] master: added new citations (cb7f585ce7)	CCTBX commit	Thu, 13 May 2021 11:32:17 +0100	116 lines
Jenkins 5a cctbx Linux build 1218 Unstable	DLS Jenkins	Thu, 13 May 2021 06:21:22 +0100	51 lines
Jenkins 5a cctbx Linux build 1217 Fixed	DLS Jenkins	Thu, 13 May 2021 05:53:24 +0100	41 lines
[git/cctbx_project] master: XFEL GUI: do not hold a reference to an initialize object (834108aaea)	CCTBX commit	Thu, 13 May 2021 01:58:47 +0200	194 lines
[git/cctbx_project] tag 'v2021.4' created	CCTBX commit	Wed, 12 May 2021 16:51:43 -0700	40 lines
[git/cctbx_project] master: Update CHANGELOG.rst for 2021.4 release (f446958e5a)	CCTBX commit	Wed, 12 May 2021 16:51:43 -0700	94 lines
[git/cctbx_project] master: Missed these mpi_command pass-throughs (e6cca4652f)	CCTBX commit	Thu, 13 May 2021 01:46:40 +0200	135 lines
[git/cctbx_project] master: XFEL GUI: swap default for facility from lcls to standalone and update XTC stream locations (ff6726a60c)	CCTBX commit	Thu, 13 May 2021 01:27:04 +0200	126 lines
[git/cctbx_project] master: XFEL GUI: can now customize mpirun command (eb8c7b4d6f)	CCTBX commit	Thu, 13 May 2021 01:04:59 +0200	457 lines
[git/cctbx_project] master: XFEL GUI: wxPython fix (11ee70b711)	CCTBX commit	Thu, 13 May 2021 00:13:44 +0200	91 lines
[git/cctbx_project] master: XFEL GUI: (slurm) add auto option for nproc per node (3ad6f2a9a2)	CCTBX commit	Thu, 13 May 2021 00:09:34 +0200	381 lines
[git/dxtbx] main: Remove residual references to pickled experiments (#363) (e86bad79)	DXTBX commit	Wed, 12 May 2021 16:44:09 +0100	223 lines
[git/dxtbx] main: Do not try to unpickle Experiments (#361) (18948423)	DXTBX commit	Wed, 12 May 2021 12:01:05 +0100	137 lines
[git/cctbx_project] master: moving ligand types to central place (f1c5af6a4d)	CCTBX commit	Tue, 11 May 2021 12:30:01 -0700	295 lines
Jenkins 5a cctbx Linux build 1211 Unstable	DLS Jenkins	Tue, 11 May 2021 07:44:52 +0100	52 lines
Jenkins 5a cctbx Linux build 1210 Fixed	DLS Jenkins	Tue, 11 May 2021 06:41:45 +0100	41 lines
[git/cctbx_project] master: This should fix two broken rsr tests in t96 (b9e5ee3f74)	CCTBX commit	Mon, 10 May 2021 18:15:46 -0700	95 lines
[git/cctbx_project] master: Safety checks after writing to array whitelist_kernel_model (#612) (0b969b004f)	CCTBX commit	Mon, 10 May 2021 13:09:10 -0700	109 lines
Jenkins 5a cctbx Linux build 1208 Unstable	DLS Jenkins	Mon, 10 May 2021 20:48:58 +0100	88 lines
[git/cctbx_project] master: mapping conventional cif labels to mtz labels with a fallback routine (871cf42c40)	CCTBX commit	Mon, 10 May 2021 11:19:16 -0700	916 lines
[git/cctbx_project] master: remove debug code (0680a29bdf)	CCTBX commit	Mon, 10 May 2021 11:19:16 -0700	90 lines
[git/cctbx_project] master: Not using cif2mtz_column_label_dict, conforming to conventional cif labels for reflections. Fixes for passing regression test tst_cif_as_mtz_wavelengths.py (5420dd88f5)	CCTBX commit	Mon, 10 May 2021 11:19:16 -0700	1316 lines
[git/cctbx_project] master: use dict.items() for both python 2 and 3, not dict.iteritems() (5995318f09)	CCTBX commit	Mon, 10 May 2021 11:19:16 -0700	96 lines
[git/cctbx_project] master: Towards passing regression tests with builders.py. Also parsing _refln.A_calc, _refln.B_calc columns as map coefficients. (27d533efcc)	CCTBX commit	Mon, 10 May 2021 11:19:16 -0700	1173 lines
[git/cctbx_project] master: remove debug code (2f539f7c2d)	CCTBX commit	Mon, 10 May 2021 11:19:16 -0700	84 lines
[git/cctbx_project] master: Towards passing more regression tests (f733c70000)	CCTBX commit	Mon, 10 May 2021 11:19:16 -0700	793 lines
[git/cctbx_project] master: bug fix: remove "style" keyword (aeb4218053)	CCTBX commit	Mon, 10 May 2021 11:19:16 -0700	95 lines
[git/cctbx_project] master: default to use new style in builder.py (c014a6c0a7)	CCTBX commit	Mon, 10 May 2021 11:19:16 -0700	118 lines
[git/cctbx_project] master: fixes for phenix_regression\cif_as_mtz\tst_cif_as_mtz.py (eed77ffc4d)	CCTBX commit	Mon, 10 May 2021 11:19:16 -0700	189 lines
[git/cctbx_project] master: un-list dictionary keys (fc435aa855)	CCTBX commit	Mon, 10 May 2021 11:19:16 -0700	89 lines
[git/cctbx_project] master: More fixes for passing regression tests (f7fd9d4e5b)	CCTBX commit	Mon, 10 May 2021 11:19:16 -0700	1069 lines
[git/cctbx_project] master: verify arrlstord has the same keys as in self._arrays (dfedbf433e)	CCTBX commit	Mon, 10 May 2021 11:19:16 -0700	138 lines
[git/cctbx_project] master: fix for incorrect hendrickson-lattman label (2dc15d55a9)	CCTBX commit	Mon, 10 May 2021 11:19:16 -0700	143 lines
[git/cctbx_project] master: use raw strings in regexp (ee3f58fd37)	CCTBX commit	Mon, 10 May 2021 11:19:16 -0700	296 lines
[git/cctbx_project] master: Fixes for passing regression tests (146baff868)	CCTBX commit	Mon, 10 May 2021 11:19:16 -0700	489 lines
[git/cctbx_project] master: fix incorrect filename (41e8db9807)	CCTBX commit	Mon, 10 May 2021 11:19:16 -0700	124 lines
[git/cctbx_project] master: Using regular expressions for parsing reflection column labels in cif files. Verify _refln.pdbx_FWT', '_refln.pdbx_PHWT' are parsed as complex arrays in the presence of other columns. Accept unconventional cif labels resembling mtz labels (9dadc83a71)	CCTBX commit	Mon, 10 May 2021 11:19:16 -0700	1715 lines
[git/cctbx_project] master: Towards passing regression test phenix_regression\cif_as_mtz\tst_cif_as_mtz.py (217483be9b)	CCTBX commit	Mon, 10 May 2021 11:19:16 -0700	297 lines
[git/cctbx_project] master: CI: update Windows build (aa75026c67)	CCTBX commit	Sun, 9 May 2021 12:22:30 -0700	875 lines
[git/cctbx_project] master: libtbx: remove warning about mock (9b9bb31a31)	CCTBX commit	Fri, 7 May 2021 22:17:39 -0700	108 lines
[git/cctbx_project] master: conda: update macOS dependencies (0070631ac7)	CCTBX commit	Fri, 7 May 2021 06:12:17 -0700	92 lines
[git/cctbx_project] master: conda: update Windows dependencies (c472b18b28)	CCTBX commit	Fri, 7 May 2021 06:12:17 -0700	92 lines
[git/cctbx_project] master: conda: update linux dependencies (9401ee1cdc)	CCTBX commit	Thu, 6 May 2021 23:40:53 -0700	92 lines
[git/dxtbx] main: Update Azure builds (#351) (6cd5afee)	DXTBX commit	Thu, 6 May 2021 17:35:50 +0100	1693 lines
[git/cctbx_project] master: Silence output (9d3be4d698)	CCTBX commit	Wed, 5 May 2021 18:34:37 -0700	97 lines
[git/cctbx_project] master: Rationalize mosaic_f_mask (4fa31b0343)	CCTBX commit	Wed, 5 May 2021 18:27:56 -0700	313 lines
[git/cctbx_project] master: exascale GPU kernel: set Fhkl to 0 if the pixel is outside hkl limits (#611) (f6b14e7fbe)	CCTBX commit	Wed, 5 May 2021 11:40:11 -0700	241 lines
[git/dxtbx] main: Extend I03 bad module mask to end of run (#355) (2e770a61)	DXTBX commit	Tue, 4 May 2021 10:01:48 +0100	112 lines
[git/cctbx_project] master: one more.. (40b8462d80)	CCTBX commit	Mon, 3 May 2021 19:32:23 -0700	91 lines
[git/cctbx_project] master: one more.. (cf11160b02)	CCTBX commit	Mon, 3 May 2021 19:29:18 -0700	93 lines
[git/cctbx_project] master: one more.. (1136ea5043)	CCTBX commit	Mon, 3 May 2021 19:26:27 -0700	118 lines
[git/cctbx_project] master: one more.. (d3dd6a07f7)	CCTBX commit	Mon, 3 May 2021 18:57:56 -0700	97 lines
[git/cctbx_project] master: assortment of small (bug) fixes (1990132828)	CCTBX commit	Mon, 3 May 2021 18:47:54 -0700	484 lines
[git/cctbx_project] master: CI: update Base (f53ea31fad)	CCTBX commit	Mon, 3 May 2021 14:52:18 -0700	338 lines
[git/cctbx_project] master: Allow to skip tests if module not available. (8b6def9537)	CCTBX commit	Mon, 3 May 2021 11:53:39 -0700	120 lines
[git/dxtbx] main: Update black to 21.4b2 and clean clutter (ed53162a)	DXTBX commit	Sun, 2 May 2021 20:35:15 +0100	349 lines
[git/cctbx_project] master: Minor explanation change (a7a45c7402)	CCTBX commit	Sat, 1 May 2021 05:32:53 -0700	89 lines
[git/cctbx_project] master: conda: add to README (7a69be8a66)	CCTBX commit	Fri, 30 Apr 2021 21:40:11 -0700	105 lines
[git/cctbx_project] master: libtbx: env.has_modules will check installed environments (5ca664fcae)	CCTBX commit	Fri, 30 Apr 2021 21:40:11 -0700	113 lines
[git/cctbx_project] master: cctbx doc: make sure modules are available (b0d0559142)	CCTBX commit	Fri, 30 Apr 2021 19:03:19 -0700	112 lines
[git/cctbx_project] master: Fix typo (366dc24882)	CCTBX commit	Fri, 30 Apr 2021 18:53:45 -0700	91 lines
[git/cctbx_project] master: cctbx doc: find ksdssp for test (78ed94fc22)	CCTBX commit	Fri, 30 Apr 2021 18:51:31 -0700	97 lines

CCTBX-COMMIT Archives

May 2021

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