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September 2020

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Subject	From	Date	Size
[git/cctbx_project] master: Update tests (478f6d3fb8)	CCTBX commit	Wed, 30 Sep 2020 16:43:11 -0600	152 lines
[git/cctbx_project] master: fix typo (d333562843)	CCTBX commit	Wed, 30 Sep 2020 16:30:16 -0600	93 lines
[git/cctbx_project] master: Add masking in local sharpening (2a692358a1)	CCTBX commit	Wed, 30 Sep 2020 16:25:05 -0600	1643 lines
[git/cctbx_project] master: iotbx: ensure default for attributes_level is set in CCTBXParser (f8c7864780)	CCTBX commit	Wed, 30 Sep 2020 15:12:11 -0700	116 lines
[git/cctbx_project] master: libtbx: update check for installed module (c6f70bb915)	CCTBX commit	Wed, 30 Sep 2020 15:12:11 -0700	94 lines
[git/cctbx_project] master: New URL for phasertng on gitlab (1aa570dc09)	CCTBX commit	Wed, 30 Sep 2020 18:35:16 +0100	101 lines
[git/cctbx_project] master: iotbx: pass random_seed in map_manager.randomize function (fcff45919e)	CCTBX commit	Tue, 29 Sep 2020 21:19:28 -0700	93 lines
[git/cctbx_project] master: add randomize to map_manager and update local_fsc (fc24543bb4)	CCTBX commit	Tue, 29 Sep 2020 09:20:24 -0600	455 lines
[git/cctbx_project] master: Working version of local resolution (3f1bc5b72e)	CCTBX commit	Tue, 29 Sep 2020 08:03:04 -0600	191 lines
[git/dxtbx] master: Update and run pre-commit hooks (0d8cbaf)	DXTBX commit	Tue, 29 Sep 2020 12:20:12 +0100	520 lines
[git/cctbx_project] master: Adopt to changes in states (25c5ee160a)	CCTBX commit	Mon, 28 Sep 2020 14:28:24 -0700	356 lines
[git/cctbx_project] master: New url for phaser and phaser regression repos (da21076dfb)	CCTBX commit	Mon, 28 Sep 2020 20:29:33 +0100	130 lines
[git/cctbx_project] master: add to execution (bcc78b4f20)	CCTBX commit	Mon, 28 Sep 2020 12:10:35 -0700	85 lines
[git/cctbx_project] master: minor cleanup and adding a test-example (123292ac15)	CCTBX commit	Mon, 28 Sep 2020 12:07:38 -0700	579 lines
[git/cctbx_project] master: removed (4febdcd3b1)	CCTBX commit	Mon, 28 Sep 2020 12:07:38 -0700	89 lines
[git/cctbx_project] master: Adding local resolution map (4fd58d7381)	CCTBX commit	Mon, 28 Sep 2020 12:51:24 -0600	814 lines
[git/cctbx_project] master: clean clutter (0002cc9758)	CCTBX commit	Mon, 28 Sep 2020 08:24:51 -0700	88 lines
[git/cctbx_project] master: Linear ligand fitting (8da885a85d)	CCTBX commit	Mon, 28 Sep 2020 08:13:09 -0700	1294 lines
[git/cctbx_project] master: Linear ligand fitting (4bc8577222)	CCTBX commit	Mon, 28 Sep 2020 08:13:09 -0700	1144 lines
[git/dxtbx] master: DIALS 3.1.3 Changelog (a1b0700)	DXTBX commit	Mon, 28 Sep 2020 16:02:03 +0100	136 lines
[git/dxtbx] master: Update i23 bad pixel mask (#220) (f0a8d81)	DXTBX commit	Mon, 28 Sep 2020 11:18:31 +0100	160 lines
[git/cctbx_project] master: iotbx: remove unused import (0c9a751513)	CCTBX commit	Sun, 27 Sep 2020 21:46:36 -0700	90 lines
[git/cctbx_project] master: libtbx: generalize update_libtbx_env.py for /Users/bkpoon/software (cfdc324607)	CCTBX commit	Sun, 27 Sep 2020 21:43:54 -0700	302 lines
[git/cctbx_project] master: Split out setting up boxes from applying so parallel jobs can do the applying (6ea4fc3dbc)	CCTBX commit	Sun, 27 Sep 2020 20:45:30 -0600	550 lines
[git/cctbx_project] master: setting up local_fsc (a258e73198)	CCTBX commit	Sun, 27 Sep 2020 16:38:01 -0600	819 lines
[git/cctbx_project] master: add as_map_model_manager (0d70896273)	CCTBX commit	Sun, 27 Sep 2020 12:23:02 -0600	125 lines
[git/cctbx_project] master: Set wrapping=False in superposed map (e2fb8afb2d)	CCTBX commit	Sun, 27 Sep 2020 11:37:54 -0600	98 lines
[git/cctbx_project] master: add is_similar (3ea26b01fa)	CCTBX commit	Sun, 27 Sep 2020 11:32:49 -0600	364 lines
[git/cctbx_project] master: Use shift_aware_rt_info (6dfaf94b9d)	CCTBX commit	Sun, 27 Sep 2020 10:48:56 -0600	234 lines
[git/cctbx_project] master: clean clutter (d9a187a1ee)	CCTBX commit	Sun, 27 Sep 2020 10:37:20 -0600	95 lines
[git/cctbx_project] master: Update tests (1344b7d7b0)	CCTBX commit	Sun, 27 Sep 2020 10:35:26 -0600	347 lines
[git/cctbx_project] master: allow selections in superposition (b068da1638)	CCTBX commit	Sun, 27 Sep 2020 10:12:59 -0600	243 lines
[git/cctbx_project] master: add shift_aware_rt to map_model_manager (f4de9ccd39)	CCTBX commit	Sun, 27 Sep 2020 10:06:35 -0600	93 lines
[git/cctbx_project] master: add shift_aware_rt to map_model_manager (26cd49d4c0)	CCTBX commit	Sun, 27 Sep 2020 10:06:01 -0600	300 lines
[git/cctbx_project] master: Add sjhift_aware_rt (4d0df8a323)	CCTBX commit	Sun, 27 Sep 2020 08:32:58 -0600	492 lines
[git/cctbx_project] master: libtbx: fix copying of egg-info directory to site-packages directory (c0af01bb1c)	CCTBX commit	Sat, 26 Sep 2020 21:07:44 -0700	337 lines
[git/cctbx_project] master: Add test for superposition (b1a6ca2f7d)	CCTBX commit	Sat, 26 Sep 2020 20:48:56 -0600	197 lines
[git/cctbx_project] master: Adding superposition to map_model_manager (c0a0a589b7)	CCTBX commit	Sat, 26 Sep 2020 20:48:02 -0600	376 lines
[git/cctbx_project] master: working on test (64eab97555)	CCTBX commit	Sat, 26 Sep 2020 15:46:22 -0600	93 lines
[git/cctbx_project] master: working version of test (a088d9d39c)	CCTBX commit	Sat, 26 Sep 2020 14:21:49 -0600	89 lines
[git/cctbx_project] master: Allow finding and setting ncs_spec objects in map_model_manager (006b27676d)	CCTBX commit	Sat, 26 Sep 2020 12:40:58 -0600	411 lines
[git/cctbx_project] master: Set defaults to use boundary=3 and skip_empty_boxes (bf9982a7f6)	CCTBX commit	Sat, 26 Sep 2020 07:35:04 -0600	113 lines
[git/dxtbx] master: scons: prevent LIBPATH from being overwritten (567f8f1)	DXTBX commit	Sat, 26 Sep 2020 12:29:53 +0100	186 lines
[git/cctbx_project] master: fix case where no chain type and case where no protein (f7f4c4224d)	CCTBX commit	Fri, 25 Sep 2020 17:28:51 -0600	137 lines
[git/dxtbx] master: Handle current Epix geometry file which doesn't include quads (988aa66)	DXTBX commit	Fri, 25 Sep 2020 10:18:17 -0700	490 lines
[git/cctbx_project] master: one extra check (590efda2d8)	CCTBX commit	Thu, 24 Sep 2020 17:53:28 -0700	105 lines
[git/cctbx_project] master: remove unused import (16fa06e82d)	CCTBX commit	Thu, 24 Sep 2020 13:53:57 -0700	93 lines
[git/cctbx_project] master: push using map_model_manager deeper into phenix.real_space_refine (ae93cefe11)	CCTBX commit	Thu, 24 Sep 2020 13:40:13 -0700	238 lines
[git/cctbx_project] master: fix typo (d496f33ef8)	CCTBX commit	Wed, 23 Sep 2020 19:48:11 -0700	88 lines
[git/cctbx_project] master: Use nint instand of just int (f09c636096)	CCTBX commit	Wed, 23 Sep 2020 17:21:31 -0700	188 lines
[git/cctbx_project] master: Bug fix: make sure map indices do not run out of map bounds (af6efe7e17)	CCTBX commit	Wed, 23 Sep 2020 14:35:26 -0700	162 lines
[git/cctbx_project] master: changes to allow comparison of different probe values (79003cb9a6)	CCTBX commit	Wed, 23 Sep 2020 11:24:17 -0700	302 lines
[git/cctbx_project] master: Bugfix for xtc_process (syncs with dials/dials#1409) (8303e38f55)	CCTBX commit	Wed, 23 Sep 2020 11:02:56 -0700	119 lines
[git/cctbx_project] master: Fix for empty reflection tables (7f66626db7)	CCTBX commit	Wed, 23 Sep 2020 10:28:41 -0700	121 lines
[git/cctbx_project] master: fix mistake in resetting bounds (1be58fdfe3)	CCTBX commit	Tue, 22 Sep 2020 19:58:37 -0700	99 lines
[git/cctbx_project] master: fix incorrect if ... else in superpose_maps and catch case where fractional coordinates are a tiny bit outside (0, 1) and call those 0 and 1 respectively (a40f1a9315)	CCTBX commit	Tue, 22 Sep 2020 19:10:27 -0700	222 lines
[git/cctbx_project] master: Initialize with None (for clarity) (f6971dfba7)	CCTBX commit	Tue, 22 Sep 2020 11:17:35 -0700	87 lines
[git/cctbx_project] master: libtbx: ensure error is triggered (99b935ffbe)	CCTBX commit	Mon, 21 Sep 2020 19:51:30 -0700	97 lines
[git/cctbx_project] master: libtbx: check error message in except (70820be6cc)	CCTBX commit	Mon, 21 Sep 2020 17:59:17 -0700	97 lines
[git/cctbx_project] master: Add ability to disable dynamic args in group_args (ef57f433bd)	CCTBX commit	Mon, 21 Sep 2020 17:19:34 -0700	171 lines
[git/cctbx_project] master: iotbx: raise a Sorry (242f33c543)	CCTBX commit	Mon, 21 Sep 2020 16:42:03 -0700	91 lines
[git/cctbx_project] master: Allow free-form input of map and model for get_map_model_manager (06b9efc724)	CCTBX commit	Mon, 21 Sep 2020 16:52:59 -0600	217 lines
[git/cctbx_project] master: XFEL GUI bug fixes (mostly run stats tab) (37488b1aec)	CCTBX commit	Mon, 21 Sep 2020 13:53:11 -0700	430 lines
[git/cctbx_project] master: Remove unused file archive (81a5ea9420)	CCTBX commit	Mon, 21 Sep 2020 08:30:11 +0100	636 lines
[git/cctbx_project] master: Allow masking map in region of non-selected model when boxing (e91259078c)	CCTBX commit	Sun, 20 Sep 2020 17:22:44 -0600	1339 lines
[git/cctbx_project] master: use set_model_symmetries_and_shift_cart_to_match_map instead of set_unit_cell_crystal_symmetry_and_shift_cart and set_shift_cart (bf411cb440)	CCTBX commit	Sun, 20 Sep 2020 14:10:26 -0700	114 lines
[git/cctbx_project] master: Remove redundant libtbx Python 3 syntax check test (#527) (f839c36915)	CCTBX commit	Sun, 20 Sep 2020 13:37:52 +0100	379 lines
[git/dxtbx] master: Clean clutter (ebfc61e)	DXTBX commit	Sun, 20 Sep 2020 05:10:46 +0100	124 lines
[git/cctbx_project] master: CI: bump Xcode to 12 for macOS 10.15 (f4be5ce739)	CCTBX commit	Sat, 19 Sep 2020 10:31:02 -0700	94 lines
[git/cctbx_project] master: CI: use dials-2.2 for Python 2 for base build (1c7dc8a5fb)	CCTBX commit	Sat, 19 Sep 2020 10:26:52 -0700	149 lines
[git/cctbx_project] master: remove spurious h5py reference (f5f8035c30)	CCTBX commit	Sat, 19 Sep 2020 12:06:19 +0100	99 lines
[git/cctbx_project] master: allow setting box_cushion (c766f197ea)	CCTBX commit	Fri, 18 Sep 2020 19:18:54 -0600	352 lines
[git/cctbx_project] master: remove seemingly unnecessary if statement; this fixes the test. (61070e20e9)	CCTBX commit	Fri, 18 Sep 2020 17:00:24 -0700	95 lines
[git/cctbx_project] master: CI: use dials-2.2 branch for Python 2 (f8a5f8aa8e)	CCTBX commit	Fri, 18 Sep 2020 16:50:04 -0700	206 lines
[git/cctbx_project] master: bootstrap: use dials-2.2 branch for Python 2 (9f74c69617)	CCTBX commit	Fri, 18 Sep 2020 16:50:04 -0700	165 lines
[git/cctbx_project] master: minor text change (76fb6f948c)	CCTBX commit	Fri, 18 Sep 2020 17:15:30 -0600	127 lines
[git/cctbx_project] master: Add tools for split_map_and_model into boxes and recombine results (01d848b7c1)	CCTBX commit	Fri, 18 Sep 2020 16:12:58 -0700	2142 lines
[git/cctbx_project] master: centre some items (add55efacb)	CCTBX commit	Fri, 18 Sep 2020 15:53:26 -0700	153 lines
[git/cctbx_project] master: flip_sym on model input to fix test (7cec43653c)	CCTBX commit	Fri, 18 Sep 2020 15:42:02 -0700	423 lines
[git/dxtbx] master: Fix for loading imageset with '%' char in filepath (#215) (5d70034)	DXTBX commit	Fri, 18 Sep 2020 12:33:42 +0100	585 lines
[git/cctbx_project] master: clean clutter (d240c63e2c)	CCTBX commit	Thu, 17 Sep 2020 19:42:57 -0700	80 lines
[git/cctbx_project] master: remove unnecessary deep copy (ad2dc726f4)	CCTBX commit	Thu, 17 Sep 2020 18:52:10 -0700	117 lines
[git/cctbx_project] master: conda: update installed environment location and windows dispatchers (66d12ba626)	CCTBX commit	Thu, 17 Sep 2020 15:31:49 -0700	232 lines
[git/dxtbx] master: Clear cache (#218) (0e52d98)	DXTBX commit	Thu, 17 Sep 2020 14:31:57 -0700	169 lines
[git/cctbx_project] master: unused import (2e6e3cff6b)	CCTBX commit	Thu, 17 Sep 2020 09:44:18 -0700	88 lines
[git/dxtbx] master: 16 bits more likely than 0; but needs revisiting (aa92ddb)	DXTBX commit	Thu, 17 Sep 2020 10:46:41 +0100	94 lines
[git/cctbx_project] master: XFEL GUI updates (a6e90819c6)	CCTBX commit	Wed, 16 Sep 2020 17:01:29 -0700	233 lines
[git/cctbx_project] master: Auto is not working anymore (4f6f0a8cb6)	CCTBX commit	Wed, 16 Sep 2020 16:45:18 -0700	89 lines
[git/cctbx_project] master: Windows: switch to utf-8 from utf-16 for nsis installer (7f2489332f)	CCTBX commit	Wed, 16 Sep 2020 16:17:30 -0700	99 lines
[git/dxtbx] master: Add thickness, material and ParallaxCorrectedPxMmStrategy to FormatXTCJungfrau.py (fc90670)	DXTBX commit	Wed, 16 Sep 2020 16:15:13 -0700	204 lines
[git/dxtbx] master: Add ffb option to FormatXTC (ab38cd6)	DXTBX commit	Wed, 16 Sep 2020 16:15:12 -0700	136 lines
[git/dxtbx] master: Use MPI reduce during image averaging (#208) (3826ad8)	DXTBX commit	Wed, 16 Sep 2020 15:57:18 -0700	512 lines
[git/cctbx_project] master: bootstrap: update module bookkeeping for CODEBASES and HOT (61272c517c)	CCTBX commit	Wed, 16 Sep 2020 08:25:39 -0700	193 lines
[git/cctbx_project] master: Clarify box_cushion (46bc52cfe0)	CCTBX commit	Tue, 15 Sep 2020 16:34:41 -0600	96 lines
[git/cctbx_project] master: update expected output (f5b15aae8b)	CCTBX commit	Tue, 15 Sep 2020 15:17:14 -0700	265 lines
[git/cctbx_project] master: iotbx: update expected output for tst_map_manager.py (d1384d0ade)	CCTBX commit	Tue, 15 Sep 2020 13:30:17 -0700	111 lines
[git/cctbx_project] master: Bugfix for small cell (800b5cb318)	CCTBX commit	Tue, 15 Sep 2020 12:29:00 -0700	100 lines
[git/cctbx_project] master: bootstrap: use DIALS 2.2 for Phenix (08d7912d4b)	CCTBX commit	Tue, 15 Sep 2020 10:48:54 -0700	116 lines
[git/dxtbx] master: Drop Travis Python 2.7 testing (#217) (b22ee61)	DXTBX commit	Tue, 15 Sep 2020 10:47:08 +0100	1342 lines
[git/cctbx_project] master: update script (ecef3f28ef)	CCTBX commit	Mon, 14 Sep 2020 21:15:34 -0700	96 lines
[git/cctbx_project] master: Remove element of sorting (and potential arbitrariness), as well as other 'd99' (d9999 etc) (6cab1d53a7)	CCTBX commit	Mon, 14 Sep 2020 18:30:56 -0700	622 lines
[git/cctbx_project] master: implement Aaron's patch to GUI (cb32f311f7)	CCTBX commit	Mon, 14 Sep 2020 15:42:15 -0700	125 lines
[git/cctbx_project] master: Fix out-of-order runs at lcls (7bcf73850e)	CCTBX commit	Mon, 14 Sep 2020 15:00:24 -0700	274 lines
[git/cctbx_project] master: make sure resolution is possible to achieve in all directions (8ba6f8fc8f)	CCTBX commit	Mon, 14 Sep 2020 14:21:13 -0700	173 lines
[git/cctbx_project] master: Remove unused variables and typedefs (#523) (2bb7a77860)	CCTBX commit	Mon, 14 Sep 2020 14:11:56 +0100	1572 lines
[git/cctbx_project] master: update expected output (7365a3dcd1)	CCTBX commit	Fri, 11 Sep 2020 16:58:17 -0700	110 lines
[git/dxtbx] master: allows use of big Jungfrau pixels (c04fa07)	DXTBX commit	Fri, 11 Sep 2020 16:18:19 -0700	304 lines
[git/cctbx_project] master: Merge branch 'NGL_HKLviewer2' (6432bd9ae9)	CCTBX commit	Fri, 11 Sep 2020 23:11:09 +0100	83 lines
[git/cctbx_project] master: improve stability of websockets, save browser font size and tooltip invocation to settings (b8298f4f27)	CCTBX commit	Fri, 11 Sep 2020 22:38:54 +0100	104 lines
[git/cctbx_project] master: improve stability of websockets, save browser font size and tooltip invocation to settings (e4d7cc2f7b)	CCTBX commit	Fri, 11 Sep 2020 22:35:54 +0100	960 lines
[git/cctbx_project] master: allows specification of separate integration/spot finding masks (b9f60b70bf)	CCTBX commit	Fri, 11 Sep 2020 13:49:46 -0700	114 lines
[git/cctbx_project] master: Use new LCLS webservice for monitoring runs (29634ffe56)	CCTBX commit	Fri, 11 Sep 2020 12:28:13 -0700	371 lines
[git/cctbx_project] master: Use d99 for default resolution (b7841a3870)	CCTBX commit	Fri, 11 Sep 2020 13:05:55 -0600	230 lines
[git/cctbx_project] master: fix case where shift is not zero (6c5a740067)	CCTBX commit	Fri, 11 Sep 2020 12:03:18 -0700	101 lines
[git/cctbx_project] master: Fix unit_cell_crystal_symmetry when changed in map_box (009299a843)	CCTBX commit	Fri, 11 Sep 2020 12:15:02 -0600	102 lines
[git/cctbx_project] master: Fix duplicate remove (3bc4760243)	CCTBX commit	Fri, 11 Sep 2020 10:54:01 -0700	91 lines
[git/cctbx_project] master: allow resolution and chain_type as defaults (0428ed2252)	CCTBX commit	Fri, 11 Sep 2020 11:37:38 -0600	431 lines
[git/cctbx_project] master: clean up so that another read of maps and model will read again (d21ad79d4b)	CCTBX commit	Thu, 10 Sep 2020 17:02:58 -0600	110 lines
[git/cctbx_project] master: fixes memory issues with cctbx.xfel.merge (660b50912b)	CCTBX commit	Thu, 10 Sep 2020 13:36:14 -0700	201 lines
[git/cctbx_project] master: updates DOI (d4ece6b5fe)	CCTBX commit	Thu, 10 Sep 2020 09:35:48 -0700	89 lines
[git/cctbx_project] master: iotbx: calculate map coefficients from map in test (621eaea0b9)	CCTBX commit	Wed, 9 Sep 2020 16:19:39 -0700	194 lines
[git/cctbx_project] master: do not set resolution without map manager (8e46ad6a3d)	CCTBX commit	Wed, 9 Sep 2020 08:13:10 -0700	91 lines
[git/cctbx_project] master: Fix setting resolution in generate_map (10a9a250ef)	CCTBX commit	Wed, 9 Sep 2020 07:02:53 -0700	117 lines
[git/cctbx_project] master: iotbx: restore directory in splitext function (83f52db1d2)	CCTBX commit	Tue, 8 Sep 2020 23:13:42 -0700	88 lines
[git/cctbx_project] master: The anyfile function is now aware of compressed extensions. This means that mrc.gz and mrc.bz2 files can be read by DataManager, MapManager, and any_file (0bb511d0e2)	CCTBX commit	Tue, 8 Sep 2020 20:17:55 -0700	344 lines
[git/cctbx_project] master: updated the splitext function to handle compression extension. (92b99160da)	CCTBX commit	Tue, 8 Sep 2020 20:17:55 -0700	272 lines
[git/cctbx_project] master: Don't compute final cc if resolution=None; this should fix multiple t96 (5abaab35c4)	CCTBX commit	Tue, 8 Sep 2020 11:53:03 -0700	194 lines
[git/cctbx_project] master: use attribute for parsing (425d0fb92d)	CCTBX commit	Tue, 8 Sep 2020 11:47:29 -0700	93 lines
[git/cctbx_project] master: Add CHANGELOG for releases (8bb1ecb40f)	CCTBX commit	Mon, 7 Sep 2020 17:49:44 -0700	84 lines
[git/cctbx_project] master: remove convenience function (5204943309)	CCTBX commit	Mon, 7 Sep 2020 18:09:54 -0600	101 lines
[git/cctbx_project] master: Minor changes allowing None for model or map (33985d7a53)	CCTBX commit	Mon, 7 Sep 2020 17:59:54 -0600	259 lines
[git/cctbx_project] master: WIP: add basic function to create an issue on GitHub (3aea26428c)	CCTBX commit	Mon, 7 Sep 2020 16:50:40 -0700	199 lines
[git/cctbx_project] master: allow supplying model (6d46b2885d)	CCTBX commit	Mon, 7 Sep 2020 16:42:50 -0600	97 lines
[git/cctbx_project] master: Allow 2 half maps (5e65026ce8)	CCTBX commit	Mon, 7 Sep 2020 15:00:46 -0600	162 lines
[git/cctbx_project] master: Add flip_symmetric_amino_acids, with a test (844aafb771)	CCTBX commit	Mon, 7 Sep 2020 12:07:22 -0700	316 lines
[git/cctbx_project] master: Simplify trace_atoms (81d1a719ab)	CCTBX commit	Mon, 7 Sep 2020 12:11:18 -0600	869 lines
[git/cctbx_project] master: use highest in map (8838837106)	CCTBX commit	Mon, 7 Sep 2020 06:15:46 -0600	519 lines
[git/cctbx_project] master: iotbx: add function to construct map_model_manager in DataManager (f811ad9ac3)	CCTBX commit	Sun, 6 Sep 2020 23:55:03 -0700	567 lines
[git/cctbx_project] master: new try at tracing blobs (5bbb4e2569)	CCTBX commit	Sun, 6 Sep 2020 21:12:23 -0600	307 lines
[git/cctbx_project] master: allow multiple blobs (077997df4a)	CCTBX commit	Sun, 6 Sep 2020 20:09:40 -0600	282 lines
[git/cctbx_project] master: remove unused imports (66e5ca220a)	CCTBX commit	Sun, 6 Sep 2020 17:13:33 -0600	88 lines
[git/cctbx_project] master: Add test (6218fcb556)	CCTBX commit	Sun, 6 Sep 2020 17:03:09 -0600	114 lines
[git/cctbx_project] master: add uniform spacing (bcc31122d8)	CCTBX commit	Sun, 6 Sep 2020 17:00:18 -0600	544 lines
[git/cctbx_project] master: Fix exception (96254059b1)	CCTBX commit	Sat, 5 Sep 2020 20:50:13 -0600	91 lines
[git/cctbx_project] master: check for availability of resolve (0ea627768d)	CCTBX commit	Sat, 5 Sep 2020 20:32:11 -0600	164 lines
[git/cctbx_project] master: iotbx: skip test if solve_resolve is not available (ef48308b8e)	CCTBX commit	Sat, 5 Sep 2020 15:32:56 -0700	143 lines
[git/cctbx_project] master: spread sites around density (7bcaa002c1)	CCTBX commit	Sat, 5 Sep 2020 15:01:35 -0600	94 lines
[git/cctbx_project] master: spread sites around density (b2752b5b7f)	CCTBX commit	Sat, 5 Sep 2020 15:00:45 -0600	225 lines
[git/cctbx_project] master: fix dist_min (61af068ef8)	CCTBX commit	Sat, 5 Sep 2020 14:19:06 -0600	89 lines
[git/cctbx_project] master: allow using finer grid (1fa239c21a)	CCTBX commit	Sat, 5 Sep 2020 13:18:43 -0600	350 lines
[git/cctbx_project] master: update trace algorithm (aee19016bd)	CCTBX commit	Sat, 5 Sep 2020 12:36:28 -0600	413 lines
[git/cctbx_project] master: add test for trace (ac6b5156a2)	CCTBX commit	Fri, 4 Sep 2020 19:11:43 -0600	189 lines
[git/cctbx_project] master: Add trace_atoms_in_map (be26ca1376)	CCTBX commit	Fri, 4 Sep 2020 18:44:55 -0600	246 lines
[git/cctbx_project] master: Minor text change (8821e0dd64)	CCTBX commit	Fri, 4 Sep 2020 16:48:56 -0600	89 lines
[git/cctbx_project] master: Updating segment replacement (8fa08ce623)	CCTBX commit	Fri, 4 Sep 2020 16:24:34 -0600	274 lines
[git/cctbx_project] master: Add convenience function to set nonbonded_weight (46ef139b2f)	CCTBX commit	Fri, 4 Sep 2020 13:13:59 -0700	96 lines
[git/cctbx_project] master: Add more merge and score methods (1a7f0ef978)	CCTBX commit	Fri, 4 Sep 2020 13:13:59 -0700	597 lines
[git/cctbx_project] master: patches a Jungfrau panel (ec38e21362)	CCTBX commit	Fri, 4 Sep 2020 12:50:26 -0700	173 lines
[git/cctbx_project] master: starting and holding function for ideal over poor ligand geometry (8f18f45855)	CCTBX commit	Fri, 4 Sep 2020 12:38:54 -0700	192 lines
[git/cctbx_project] master: exclude sulphur linking at all times (66d1a56adc)	CCTBX commit	Fri, 4 Sep 2020 09:55:08 -0700	237 lines
[git/cctbx_project] master: minor text change (ceacc5c899)	CCTBX commit	Fri, 4 Sep 2020 06:45:04 -0600	181 lines
[git/cctbx_project] master: Update paths for static folders. (b62cb4d396)	CCTBX commit	Thu, 3 Sep 2020 15:41:38 -0700	215 lines
[git/cctbx_project] master: Allow one-line model selection; Allow setting boundary_mask_radius (889dab0db4)	CCTBX commit	Thu, 3 Sep 2020 15:57:50 -0600	219 lines
[git/cctbx_project] master: bootstrap: add phenix_dev_doc to phenix builder (e5b2ace47e)	CCTBX commit	Thu, 3 Sep 2020 14:01:38 -0700	128 lines
[git/cctbx_project] master: conda: pick sys.prefix as default for LIBTBX_BUILD (dae67cf0e9)	CCTBX commit	Thu, 3 Sep 2020 13:43:59 -0700	170 lines
[git/cctbx_project] master: conda: add libraries and extensions (bb2a0c1554)	CCTBX commit	Thu, 3 Sep 2020 13:43:59 -0700	709 lines
[git/cctbx_project] master: cbflib_adaptbx: prevent overwriting of CPPPATH (63c9ae1117)	CCTBX commit	Thu, 3 Sep 2020 13:43:59 -0700	123 lines
[git/cctbx_project] master: libtbx: add more checks for installed env (0c1476499a)	CCTBX commit	Thu, 3 Sep 2020 13:43:59 -0700	540 lines
[git/cctbx_project] master: libtbx: add initial instructions for installation (c38feed269)	CCTBX commit	Thu, 3 Sep 2020 13:43:59 -0700	103 lines
[git/cctbx_project] master: conda: add option to change location of libtbx_env (c3ea457b47)	CCTBX commit	Thu, 3 Sep 2020 13:43:59 -0700	420 lines
[git/cctbx_project] master: config: add initial function for dispatchers for conda (055e295898)	CCTBX commit	Thu, 3 Sep 2020 13:43:59 -0700	459 lines
[git/cctbx_project] master: conda: add Windows builds (ea0afca118)	CCTBX commit	Thu, 3 Sep 2020 13:43:59 -0700	909 lines
[git/cctbx_project] master: conda: re-enable configure and refresh commands (6eb1518ec2)	CCTBX commit	Thu, 3 Sep 2020 13:43:59 -0700	116 lines
[git/cctbx_project] master: conda: add headers (94d3375f24)	CCTBX commit	Thu, 3 Sep 2020 13:43:59 -0700	592 lines
[git/cctbx_project] master: libtbx: add installed attribute (9b1d3242bd)	CCTBX commit	Thu, 3 Sep 2020 13:43:59 -0700	1405 lines
[git/cctbx_project] master: conda: remove LIBTBX_BUILD from dispatchers (a2868f3484)	CCTBX commit	Thu, 3 Sep 2020 13:43:59 -0700	204 lines
[git/cctbx_project] master: conda: pick /share/cctbx as default for LIBTBX_BUILD (12d448c748)	CCTBX commit	Thu, 3 Sep 2020 13:43:59 -0700	98 lines
[git/cctbx_project] master: conda: temporarily remove configure and refresh commands (fd302e07d4)	CCTBX commit	Thu, 3 Sep 2020 13:43:59 -0700	113 lines
[git/cctbx_project] master: conda: fix path for writing conda dispatchers (dedeb397a7)	CCTBX commit	Thu, 3 Sep 2020 13:43:59 -0700	95 lines
[git/cctbx_project] master: conda: add scripts for conda-build (990ba48cd3)	CCTBX commit	Thu, 3 Sep 2020 13:43:59 -0700	1283 lines
[git/cctbx_project] master: conda: add non-Python binaries (f6b89a067b)	CCTBX commit	Thu, 3 Sep 2020 13:43:59 -0700	1326 lines
[git/cctbx_project] master: conda: remove python.app from path on macOS (0199ed2e84)	CCTBX commit	Thu, 3 Sep 2020 13:43:59 -0700	146 lines
[git/cctbx_project] master: conda: add option to copy egg-info (1c00fb5497)	CCTBX commit	Thu, 3 Sep 2020 13:43:59 -0700	297 lines
[git/cctbx_project] master: scons: prevent installed modules from recompiling (4363cdef50)	CCTBX commit	Thu, 3 Sep 2020 13:43:59 -0700	2999 lines
[git/cctbx_project] master: Preparation for phenix dev doc. (6edfaeeddd)	CCTBX commit	Thu, 3 Sep 2020 13:35:24 -0700	204 lines
[git/cctbx_project] master: allow removing 'model' (bb2795a2dc)	CCTBX commit	Thu, 3 Sep 2020 13:48:01 -0600	164 lines
[git/cctbx_project] master: Use fractional boundaries in removing outside model (334c02a736)	CCTBX commit	Thu, 3 Sep 2020 12:15:00 -0700	137 lines
[git/cctbx_project] master: Add convenience function to read map and model (09acad43b2)	CCTBX commit	Thu, 3 Sep 2020 11:45:30 -0600	359 lines
[git/cctbx_project] master: Add a deprecate_method function. (#522) (81f0b5ffa4)	CCTBX commit	Thu, 3 Sep 2020 16:35:56 +0100	247 lines
[git/dxtbx] master: Remove trailing comma for more compact code (d17b7cc)	DXTBX commit	Thu, 3 Sep 2020 14:56:14 +0100	98 lines
[git/cctbx_project] master: cctbx doc: move html files to directory (6061459155)	CCTBX commit	Wed, 2 Sep 2020 21:37:02 -0700	108 lines
[git/cctbx_project] master: Merge remote-tracking branch 'origin/master' (84566e4111)	CCTBX commit	Wed, 2 Sep 2020 17:15:42 -0700	66 lines
[git/cctbx_project] master: Fix to allow MapManager to open gzipped mrc files. The current implementation uses memory-mapped read, which is incompatible with compressed files. We could check for compressed extensions, but this functionality already exists in mrcfile.open(). So now it just falls back to that. (93eafbc25a)	CCTBX commit	Wed, 2 Sep 2020 17:14:28 -0700	205 lines
[git/cctbx_project] master: Fix bug (#525) (d669513aaa)	CCTBX commit	Wed, 2 Sep 2020 09:33:23 -0700	103 lines
[git/dxtbx] master: Fixup a couple of the recent black changes. (88cfc0b)	DXTBX commit	Tue, 1 Sep 2020 17:44:19 +0100	228 lines
[git/dxtbx] master: DIALS 3.1.1 Changelog (7e3034c)	DXTBX commit	Tue, 1 Sep 2020 17:28:10 +0100	116 lines
[git/dxtbx] master: Fix FormatSMVADSC breaking with non-integer pedestal (#216) (89f509d)	DXTBX commit	Tue, 1 Sep 2020 14:36:58 +0100	235 lines

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September 2020

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