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May 2024


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Date Sorted by Date, Most Recent First

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[git/cctbx_project] master: Bug fix: once model is processed there is no model_input any more (fd728736ce)

CCTBX commit

Sat, 25 May 2024 15:24:55 -0700

96 lines

[git/cctbx_project] master: adjust transparency, propagate keep_occupancy parameter (7bc72e7116)

CCTBX commit

Sat, 25 May 2024 14:44:38 -0700

122 lines

[git/cctbx_project] master: 3x faster adopt_xray_structure(). 7% off of pdb_interpretation runtime. (8a5111d25e)

CCTBX commit

Fri, 24 May 2024 18:48:20 -0700

101 lines

[git/cctbx_project] master: Remove unused counter. (4d9dba267c)

CCTBX commit

Fri, 24 May 2024 15:05:09 -0700

350 lines

[git/cctbx_project] master: Clean clutter (1f16ea1a9b)

CCTBX commit

Fri, 24 May 2024 13:16:28 -0700

92 lines

[git/cctbx_project] master: Tidy-up Phenix: remove phenix.chains_as_models.py. Adapt test. (8a814870e0)

CCTBX commit

Fri, 24 May 2024 13:10:49 -0700

213 lines

[git/cctbx_project] master: Allow running tests with specific words (b3404476ee)

CCTBX commit

Fri, 24 May 2024 12:38:10 -0700

135 lines

[git/cctbx_project] master: cleanup test changes (0abde96945)

CCTBX commit

Thu, 23 May 2024 15:55:29 -0400

101 lines

[git/cctbx_project] master: updates to mp test code to test vs mmcif files (03769f5727)

CCTBX commit

Thu, 23 May 2024 14:34:49 -0400

99 lines

[git/cctbx_project] master: XFEL GUI updates (#992) (9adc9aac3b)

CCTBX commit

Thu, 23 May 2024 09:32:04 -0700

2222 lines

[git/dxtbx] main: DIALS 3.19.1 Changelog (209c71d4)

DXTBX commit

Thu, 23 May 2024 16:29:25 +0100

111 lines

[git/dxtbx] main: MNT: Increase dev version that got out-of-sync (c0e98643)

DXTBX commit

Thu, 23 May 2024 09:22:52 +0100

110 lines

[git/dxtbx] main: Fix old I03 data not processing (#737) (c4fc39f1)

DXTBX commit

Thu, 23 May 2024 08:16:46 +0000

353 lines

[git/cctbx_project] master: Change dispatcher name for qscore to mmtbx.development.qscore (2e52877346)

CCTBX commit

Wed, 22 May 2024 10:44:22 -0700

84 lines

[git/cctbx_project] master: Remove chain if it becomes empty in merge_atoms_at_end_to_residues. Add test. (e112bb9f6a)

CCTBX commit

Wed, 22 May 2024 10:23:32 -0700

425 lines

[git/cctbx_project] master: Keep list of expected failures even when using sorted version (824e38e178)

CCTBX commit

Tue, 21 May 2024 14:27:15 -0700

320 lines

[git/cctbx_project] master: Bugfix UR-6982: wrong CC1/2 values. The values are not wrong, but Xtriage displays the Ranom column instead of CC1/2. Fixed with this commit. Will break three wizard tests. (d564aa3f60)

CCTBX commit

Mon, 20 May 2024 18:45:48 -0700

97 lines

[git/cctbx_project] master: Mpi helper counter (#991) (1d5885da49)

CCTBX commit

Mon, 20 May 2024 09:54:22 -0700

297 lines

[git/cctbx_project] master: New test showcasign the different empty altlocs - no characters and whitespace. (cb4355e94d)

CCTBX commit

Mon, 20 May 2024 09:20:16 -0700

276 lines

[git/cctbx_project] master: Bug fix revealed by qr.refine (bde6203e63)

CCTBX commit

Sun, 19 May 2024 18:51:29 -0700

102 lines

[git/cctbx_project] master: Allow specification of tests to run based on changed files in github (d3345800bb)

CCTBX commit

Fri, 17 May 2024 13:58:42 -0600

99 lines

[git/cctbx_project] master: Allow specification of tests to run based on changed files in github (64546a72de)

CCTBX commit

Fri, 17 May 2024 13:54:27 -0600

107 lines

[git/cctbx_project] master: Allow specification of tests to run based on changed files in github (a5d3370832)

CCTBX commit

Fri, 17 May 2024 13:50:22 -0600

342 lines

[git/cctbx_project] master: CI: switch to an earlier version of git (db4a05c878)

CCTBX commit

Thu, 16 May 2024 21:02:20 -0700

144 lines

[git/cctbx_project] master: Reduce2: bugfixes (38b21884fd)

CCTBX commit

Thu, 16 May 2024 15:59:26 -0700

154 lines

[git/cctbx_project] master: splitting the test, removing double-run, defining prefix to avoid race conditions in different tests. (571e1c69d4)

CCTBX commit

Wed, 15 May 2024 13:27:42 -0700

963 lines

[git/cctbx_project] master: fix typo (3d206eddf8)

CCTBX commit

Tue, 14 May 2024 16:09:30 -0700

92 lines

[git/cctbx_project] master: clean clutter (48a50eedf2)

CCTBX commit

Tue, 14 May 2024 16:00:54 -0700

88 lines

[git/cctbx_project] master: Add map_model_manager tests (df740de95a)

CCTBX commit

Tue, 14 May 2024 16:59:20 -0600

129 lines

[git/cctbx_project] master: Add test (b0e5c9e50c)

CCTBX commit

Tue, 14 May 2024 15:55:43 -0700

105 lines

[git/cctbx_project] master: Restore average_maps.py and use local_resolution_map in map_model_manager (d5c18d0e20)

CCTBX commit

Tue, 14 May 2024 15:48:02 -0700

642 lines

[git/cctbx_project] master: Clean clutter :) (9ff66f4067)

CCTBX commit

Tue, 14 May 2024 12:12:48 -0700

84 lines

[git/cctbx_project] master: Tidy-up Phenix: remove iotbx/command_line/isomorphous_difference_patterson.py (fe3b2d01a1)

CCTBX commit

Tue, 14 May 2024 12:11:43 -0700

563 lines

[git/cctbx_project] master: Bugfix t96: fobs_minus_fobs (resulting from refactoring of mmmtbx/find_peaks.py) (8c09199db6)

CCTBX commit

Tue, 14 May 2024 10:01:08 -0700

158 lines

[git/cctbx_project] master: Fix missing d_min (0e18289500)

CCTBX commit

Mon, 13 May 2024 15:39:49 -0700

92 lines

[git/dxtbx] main: Clean Clutter (88c7db30)

DXTBX commit

Sun, 12 May 2024 05:10:21 +0100

91 lines

[git/cctbx_project] master: fix typo (33889acb77)

CCTBX commit

Sat, 11 May 2024 08:47:19 -0700

104 lines

[git/cctbx_project] master: fix typo in ambiguous (199a9ff791)

CCTBX commit

Sat, 11 May 2024 08:36:43 -0700

293 lines

[git/cctbx_project] master: XFEL GUI: tweaks to energy tab (ed334c3748)

CCTBX commit

Fri, 10 May 2024 16:14:12 -0700

355 lines

[git/cctbx_project] master: Add fiducials to logging for XTC (91e49cb595)

CCTBX commit

Fri, 10 May 2024 12:09:48 -0700

157 lines

[git/cctbx_project] master: xfel.fee_calibration: add max_events (5700051b2f)

CCTBX commit

Fri, 10 May 2024 12:05:33 -0700

242 lines

[git/cctbx_project] master: Add 3D filtering and augmentation to cctbx.xfel.powder_from_spots (4959621180)

CCTBX commit

Fri, 10 May 2024 11:03:48 -0700

576 lines

[git/dxtbx] main: Add thin wrapper for nxmx_writer.py (dxtbx.any2nexus) (#735) (22d297f4)

DXTBX commit

Fri, 10 May 2024 16:35:55 +0000

127 lines

[git/cctbx_project] master: ProgramTemplate: add option to control how ambigious PHIL parameters are processed (32e181a69f)

CCTBX commit

Thu, 9 May 2024 14:43:30 -0700

137 lines

[git/cctbx_project] master: libtbx: add option to preserve previous PHIL parsing behavior of no assumptions (f859d1f6aa)

CCTBX commit

Thu, 9 May 2024 14:39:22 -0700

406 lines

[git/cctbx_project] master: Improve test behavior: use assert not easy_run.call(). Part 2. (82deb0fb18)

CCTBX commit

Thu, 9 May 2024 12:59:07 -0700

383 lines

[git/cctbx_project] master: Improve test behavior: use assert not easy_run.call() (2af1489b3c)

CCTBX commit

Thu, 9 May 2024 12:31:32 -0700

507 lines

[git/cctbx_project] master: clean weights (fc887323be)

CCTBX commit

Wed, 8 May 2024 20:06:03 -0700

154 lines

[git/cctbx_project] master: Continue templating and abstracting minimizers (c4c68aa44a)

CCTBX commit

Wed, 8 May 2024 20:03:54 -0700

780 lines

[git/cctbx_project] master: simplify weights object (7ddf7699ae)

CCTBX commit

Wed, 8 May 2024 17:30:50 -0700

197 lines

[git/cctbx_project] master: remove unused imports (9e388b8d26)

CCTBX commit

Wed, 8 May 2024 10:42:45 -0700

88 lines

[git/cctbx_project] master: fix occupancy groupping for 3D case (Nat's code) (b28804ff47)

CCTBX commit

Wed, 8 May 2024 10:30:31 -0700

221 lines

[git/cctbx_project] master: Check for nan when reading in mrc maps (aba8ae5e70)

CCTBX commit

Wed, 8 May 2024 10:07:55 -0700

199 lines

[git/cctbx_project] master: Updates to match new water picking (c7dc5de7d1)

CCTBX commit

Wed, 8 May 2024 09:40:23 -0700

292 lines

[git/cctbx_project] master: More permissive behavior with test (2f88f5b8e9)

CCTBX commit

Tue, 7 May 2024 10:37:05 -0700

152 lines

[git/cctbx_project] master: New test and safeguarding. (38c81ffbc9)

CCTBX commit

Tue, 7 May 2024 10:37:05 -0700

260 lines

[git/dxtbx] main: Fix Scan.get_property key type. (#734) (3e875f0a)

DXTBX commit

Tue, 7 May 2024 12:01:43 +0100

113 lines

[git/cctbx_project] master: This parameter does not exist any more (1a4dfda1ba)

CCTBX commit

Mon, 6 May 2024 18:03:53 -0700

125 lines

[git/cctbx_project] master: Work on altlocs conditionally (c7b9e30483)

CCTBX commit

Mon, 6 May 2024 18:01:55 -0700

182 lines

[git/cctbx_project] master: Add estimate of ratio of deviations to sigmas (270ce72886)

CCTBX commit

Mon, 6 May 2024 16:19:18 -0600

224 lines

[git/cctbx_project] master: Clarify map names, add main chain masking, handle H correctly (80cbf5239c)

CCTBX commit

Mon, 6 May 2024 13:55:11 -0700

600 lines

[git/cctbx_project] master: mmtbx: add print_function import (635dc5998c)

CCTBX commit

Mon, 6 May 2024 09:52:24 -0700

82 lines

[git/cctbx_project] master: Test for mmtbx/refinement/wrappers.py (6d14342868)

CCTBX commit

Sun, 5 May 2024 18:38:10 -0700

609 lines

[git/cctbx_project] master: Towards generalizing the use of LBFGS and switching to LBFGS-B (a86cf234aa)

CCTBX commit

Sun, 5 May 2024 18:24:01 -0700

487 lines

[git/cctbx_project] master: fixes geometry refinement (#990) (baa56f5d5f)

CCTBX commit

Sat, 4 May 2024 09:54:45 -0500

115 lines

[git/cctbx_project] master: Reduce2: ignore UNL residues (unknown ligand) (56944993d1)

CCTBX commit

Thu, 2 May 2024 13:16:11 -0700

93 lines

[git/cctbx_project] master: Add expected values (6108377d47)

CCTBX commit

Thu, 2 May 2024 12:01:58 -0600

759 lines

[git/cctbx_project] master: Catch None (a7a290da82)

CCTBX commit

Wed, 1 May 2024 13:46:51 -0600

136 lines

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