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[git/cctbx] master: Count number of fragments in chain_comparison (3ed10a9a1)
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CCTBX commit |
Mon, 30 Apr 2018 16:23:24 -0600 |
570 lines |
[git/cctbx] master: DataManager: update passing of PHIL scope to model (2f4e6f206)
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Mon, 30 Apr 2018 14:02:25 -0700 |
162 lines |
Jenkins 5b cctbx MacOS build 2467 Unstable
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DLS Jenkins |
Mon, 30 Apr 2018 21:36:29 +0100 |
46 lines |
[git/cctbx] master: DataManager: update CCTBXParser to pass logger argument (a99301d5f)
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Mon, 30 Apr 2018 13:33:57 -0700 |
158 lines |
[git/cctbx] master: DataManager: add restraints to models (44097c00a)
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Mon, 30 Apr 2018 13:19:50 -0700 |
674 lines |
[git/cctbx] master: Fix incorrect copy (6acc2996c)
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Mon, 30 Apr 2018 11:49:49 -0600 |
180 lines |
[git/cctbx] master: mmtbx.model: setter function for restraints files (59b93f3d0)
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Mon, 30 Apr 2018 10:45:25 -0700 |
99 lines |
[git/cctbx] master: set sequence in sharpening_info_object (dd858245d)
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Mon, 30 Apr 2018 10:22:58 -0600 |
73 lines |
[git/cctbx] master: Validate hydrogens: ensure restraints manager exists (28513e698)
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Mon, 30 Apr 2018 09:20:34 -0700 |
133 lines |
[git/cctbx] master: improve some comments (d85f4d2d3)
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Mon, 30 Apr 2018 14:53:07 +0100 |
200 lines |
[git/cctbx] master: optional assert_is_compatible_unit_cell=True parameter (e6cd25bad)
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Mon, 30 Apr 2018 10:57:49 +0100 |
88 lines |
[git/cctbx] master: dxtbx.model.crystal: add convinence get_crystal_symmetry() function (3e55194c5)
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Mon, 30 Apr 2018 10:21:01 +0100 |
132 lines |
[git/cctbx] master: Fixed image readers test (eb066297c)
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Mon, 30 Apr 2018 09:25:29 +0100 |
189 lines |
[git/cctbx] master: Bugfix (9dddd3c38)
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CCTBX commit |
Sat, 28 Apr 2018 23:43:56 -0700 |
91 lines |
[git/cctbx] master: Remove dxtbx root imports (cbc9e8210)
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CCTBX commit |
Sat, 28 Apr 2018 21:11:39 +0100 |
91 lines |
[git/cctbx] master: catch case where there is no helical ncs (0fbd692ce)
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CCTBX commit |
Fri, 27 Apr 2018 19:25:10 -0600 |
230 lines |
[git/cctbx] master: DataManager: reorganize miller_array datatype (af299a4d7)
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CCTBX commit |
Fri, 27 Apr 2018 16:23:18 -0700 |
801 lines |
[git/cctbx] master: XFEL GUI: add select run blocks button (b2f5c3c02)
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Fri, 27 Apr 2018 15:44:35 -0700 |
466 lines |
[git/cctbx] master: If dispatch.integrate=False, still log a frame (07d12364f)
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Fri, 27 Apr 2018 10:40:59 -0700 |
101 lines |
[git/cctbx] master: Only apply compatibility fixes on Python2 (7ec80c302)
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Fri, 27 Apr 2018 12:31:42 +0100 |
121 lines |
[git/cctbx] master: Restore use of Python2-3 object() (16a95b854)
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CCTBX commit |
Fri, 27 Apr 2018 10:03:58 +0100 |
317 lines |
Jenkins 5a cctbx Tests build 6492 Fixed
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DLS Jenkins |
Fri, 27 Apr 2018 08:59:30 +0100 |
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[git/cctbx] master: Spell needed to make iterator thing an iterator (80cddad41)
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CCTBX commit |
Fri, 27 Apr 2018 08:53:42 +0100 |
73 lines |
Jenkins 5a cctbx Tests build 6491 Failure
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DLS Jenkins |
Fri, 27 Apr 2018 08:51:48 +0100 |
150 lines |
[git/cctbx] master: fix install/refresh error and failing scitbx test for now (767cdf7c3)
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CCTBX commit |
Fri, 27 Apr 2018 08:46:34 +0100 |
76 lines |
[git/cctbx] master: clean clutter (0d0a376a5)
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CCTBX commit |
Thu, 26 Apr 2018 20:04:15 -0600 |
74 lines |
[git/cctbx] master: Add map_box capability to extract unique part of a ap based on symmetry or symmetry file (7501c1a39)
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CCTBX commit |
Thu, 26 Apr 2018 17:55:52 -0700 |
2491 lines |
[git/cctbx] master: Add parameter hash_filenames to cxi.merge (d547ac124)
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CCTBX commit |
Thu, 26 Apr 2018 16:37:38 -0700 |
272 lines |
[git/cctbx] master: Add tabulate to install base packages. (888cf1bd6)
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CCTBX commit |
Thu, 26 Apr 2018 10:54:21 -0700 |
263 lines |
Jenkins 5a cctbx Tests build 6485 Unstable
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Thu, 26 Apr 2018 18:53:17 +0100 |
42 lines |
[git/cctbx] master: Remaining C++ compile problems for python 3 (33b97d490)
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CCTBX commit |
Thu, 26 Apr 2018 10:43:57 -0700 |
814 lines |
[git/cctbx] master: First work on converting C++ code to use the python 3 interfaces (#165) (d3f7d71d8)
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CCTBX commit |
Thu, 26 Apr 2018 10:43:57 -0700 |
971 lines |
[git/cctbx] master: Don't rely on UTF8 being available. (722bea760)
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CCTBX commit |
Thu, 26 Apr 2018 10:43:57 -0700 |
86 lines |
[git/cctbx] master: clean up imports (56dab55a6)
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CCTBX commit |
Thu, 26 Apr 2018 10:43:57 -0700 |
248 lines |
[git/cctbx] master: Python3: Convert run_tests_parallel (733f17870)
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Thu, 26 Apr 2018 10:43:57 -0700 |
2157 lines |
[git/cctbx] master: Tweaks to allow python3 build on mac (d979a624b)
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CCTBX commit |
Thu, 26 Apr 2018 12:05:33 +0100 |
146 lines |
[git/cctbx] master: removing unnecessary modules from PhaserBuilder (9886e5f09)
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CCTBX commit |
Thu, 26 Apr 2018 11:20:44 +0100 |
120 lines |
[git/cctbx] master: Add basic functionality to Goniometer to record a scan-varying setting rotation (0eb48b78a)
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CCTBX commit |
Thu, 26 Apr 2018 11:00:03 +0100 |
447 lines |
[git/cctbx] master: Extend serialisation for MultiAxisGoniometer (0d189be57)
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CCTBX commit |
Thu, 26 Apr 2018 11:00:03 +0100 |
244 lines |
[git/cctbx] master: extend operator== and is_similar_to checks to test scan-varying setting matrix (690d3ce6e)
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CCTBX commit |
Thu, 26 Apr 2018 11:00:03 +0100 |
338 lines |
[git/cctbx] master: Add pickle support for goniometer with scan-varying setting rotation (2c95618ee)
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CCTBX commit |
Thu, 26 Apr 2018 11:00:03 +0100 |
141 lines |
[git/cctbx] master: Serialisation test for MultiAxisGoniometer (a83e954b4)
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CCTBX commit |
Thu, 26 Apr 2018 11:00:03 +0100 |
210 lines |
[git/cctbx] master: Support conversion of scan-varying goniometer to/from dict (b96c4a73d)
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CCTBX commit |
Thu, 26 Apr 2018 11:00:03 +0100 |
289 lines |
[git/cctbx] master: Bugfix (14ef29e7d)
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Wed, 25 Apr 2018 17:36:09 -0700 |
79 lines |
[git/cctbx] master: Bugfix (1887c2e56)
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CCTBX commit |
Wed, 25 Apr 2018 17:05:21 -0700 |
97 lines |
[git/cctbx] master: fix bug: always read indexing solution from memory. (f4b3deaba)
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CCTBX commit |
Wed, 25 Apr 2018 16:21:19 -0700 |
80 lines |
[git/cctbx] master: XFEL UI: strongest spots get strongest color (313448e60)
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CCTBX commit |
Wed, 25 Apr 2018 16:16:47 -0700 |
75 lines |
[git/cctbx] master: XFEL UI: allow the user to select higher threshold # multiple lattices. (d9e70a66e)
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Wed, 25 Apr 2018 14:43:57 -0700 |
546 lines |
[git/cctbx] master: XFEL UI: track lengths of spots in the Spotfinder tab. (88ac831b0)
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CCTBX commit |
Wed, 25 Apr 2018 13:49:44 -0700 |
643 lines |
[git/cctbx] master: Get radial lengths of all spotfinder spots. (1b05d2ce2)
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CCTBX commit |
Wed, 25 Apr 2018 13:49:44 -0700 |
260 lines |
[git/cctbx] master: XFEL UI: Color spot length subplot by individual spot intensity. (ce8dd616e)
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CCTBX commit |
Wed, 25 Apr 2018 13:49:44 -0700 |
430 lines |
[git/cctbx] master: bugfix (d7b099186)
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CCTBX commit |
Wed, 25 Apr 2018 13:49:44 -0700 |
98 lines |
[git/cctbx] master: Catch multiple calls to define_entry_points (d56ce4189)
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CCTBX commit |
Wed, 25 Apr 2018 15:04:04 +0100 |
114 lines |
[git/cctbx] master: bump procrunner version (a3dae538b)
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CCTBX commit |
Wed, 25 Apr 2018 08:55:55 +0100 |
77 lines |
[git/cctbx] master: A few syntax fixes required for Python3 build (36e32209c)
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CCTBX commit |
Wed, 25 Apr 2018 08:50:11 +0100 |
227 lines |
[git/cctbx] master: Minor cleanup (f80b84e0f)
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CCTBX commit |
Tue, 24 Apr 2018 17:12:52 -0700 |
191 lines |
[git/cctbx] master: Add paramter save_cbf to quadrants_cbf (0e6cf4eb4)
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CCTBX commit |
Tue, 24 Apr 2018 17:04:35 -0700 |
140 lines |
[git/cctbx] master: Add to detector_residuals new parameters: verbose and repredict_input_reflections (80e2aac00)
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CCTBX commit |
Tue, 24 Apr 2018 17:04:29 -0700 |
515 lines |
[git/cctbx] master: added a few methods (a1f97d90d)
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CCTBX commit |
Tue, 24 Apr 2018 15:43:03 -0700 |
191 lines |
[git/cctbx] master: Putative fix for https://jira.diamond.ac.uk/browse/SCI-7188; may need to directly patch installed version unless @Anthchirp we're able to push out a release today? (3435790c5)
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CCTBX commit |
Tue, 24 Apr 2018 09:35:18 +0100 |
84 lines |
[git/cctbx] master: changes to make it look like the old output if only one file selected (899e059d8)
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CCTBX commit |
Mon, 23 Apr 2018 11:18:06 -0700 |
97 lines |
[git/cctbx] master: added model_list parameter (b12369b1e)
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CCTBX commit |
Mon, 23 Apr 2018 11:18:06 -0700 |
192 lines |
[git/cctbx] master: Attempt to set Rayonix gain, for #51 (c882109ea)
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CCTBX commit |
Mon, 23 Apr 2018 14:47:59 +0100 |
290 lines |
[git/cctbx] master: More conventional to query dxtbx object directly rather than going through to_dict method (bcfe22efe)
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CCTBX commit |
Mon, 23 Apr 2018 12:47:08 +0100 |
85 lines |
[git/cctbx] master: dxtbx Beam.get_direction() rather perversely returns the sample-to-source direction, not the direction of propagation of photons. Use get_unit_s0() instead and fix for knock-on effects (d19eda848)
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CCTBX commit |
Mon, 23 Apr 2018 12:47:08 +0100 |
145 lines |
[git/cctbx] master: Set beam centre explicitly to avoid the detector being moved within the call to update_beamcenter() (50bab30df)
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CCTBX commit |
Mon, 23 Apr 2018 12:47:08 +0100 |
85 lines |
[git/cctbx] master: Sensible default rotation axis (10b1538d4)
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CCTBX commit |
Mon, 23 Apr 2018 12:47:08 +0100 |
87 lines |
[git/cctbx] master: Be explicit with variable type for sqrt() on Windows (5abf78285)
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CCTBX commit |
Mon, 23 Apr 2018 12:10:23 +0100 |
70 lines |
[git/cctbx] master: This file was only a FIXME note, not fixed for 5 years (de36fc248)
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CCTBX commit |
Mon, 23 Apr 2018 10:37:19 +0100 |
64 lines |
[git/cctbx] master: After cloning a new git repository print out the current commit ID (256736eec)
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Mon, 23 Apr 2018 08:16:33 +0100 |
95 lines |
[git/cctbx] master: clean clutter (f9084687a)
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CCTBX commit |
Sun, 22 Apr 2018 17:38:04 -0700 |
49 lines |
[git/cctbx] master: Add test for translational_shift (3d1990850)
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CCTBX commit |
Sun, 22 Apr 2018 17:26:01 -0700 |
224 lines |
[git/cctbx] master: clean clutter (3dd705d16)
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CCTBX commit |
Sun, 22 Apr 2018 14:53:21 -0700 |
52 lines |
[git/cctbx] master: by default (keep_origin=True) map_box writes out maps in original location with map_box cell. PDB written with map_box cell in original location. Temporary work-around to xplor map writer allowing writing of any part of any maps marked with 'XXX temporary flag allowing any cell' (fae224ca9)
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CCTBX commit |
Sun, 22 Apr 2018 14:44:23 -0700 |
1212 lines |
[git/cctbx] master: improved the PHIL scope (fc5421329)
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CCTBX commit |
Fri, 20 Apr 2018 16:24:20 -0700 |
111 lines |
[git/cctbx] master: Add Schrodinger force field phil. (54c879841)
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CCTBX commit |
Fri, 20 Apr 2018 16:24:20 -0700 |
123 lines |
[git/cctbx] master: Base_geometry class (a5b2178f6)
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CCTBX commit |
Fri, 20 Apr 2018 16:24:20 -0700 |
961 lines |
[git/cctbx] master: bugfix (c3b984f4b)
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Fri, 20 Apr 2018 16:24:20 -0700 |
76 lines |
[git/cctbx] master: bugfix (43252d391)
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Fri, 20 Apr 2018 16:24:20 -0700 |
75 lines |
[git/cctbx] master: New approach to schrodinger. Let it have fully constructed geometry to work with. (e0732559b)
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CCTBX commit |
Fri, 20 Apr 2018 16:24:20 -0700 |
316 lines |
[git/cctbx] master: bugfix (20d500de8)
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CCTBX commit |
Fri, 20 Apr 2018 16:24:20 -0700 |
108 lines |
[git/cctbx] master: Stub in the model to init Schrodinger (07cab0024)
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CCTBX commit |
Fri, 20 Apr 2018 16:24:20 -0700 |
364 lines |
[git/cctbx] master: fix typo (317d69de3)
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CCTBX commit |
Fri, 20 Apr 2018 13:01:35 -0700 |
77 lines |
[git/cctbx] master: simtbx now works on windows and no warnings on mac (317298daa)
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CCTBX commit |
Fri, 20 Apr 2018 12:14:25 -0700 |
229 lines |
Jenkins 5a cctbx Tests build 6450 Fixed
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Fri, 20 Apr 2018 14:01:23 +0100 |
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Jenkins 5a cctbx Tests build 6449 Unstable
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DLS Jenkins |
Fri, 20 Apr 2018 13:47:10 +0100 |
27 lines |
[git/cctbx] master: Fixed bug in identifiers (be84c0812)
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CCTBX commit |
Fri, 20 Apr 2018 13:46:57 +0100 |
113 lines |
[git/cctbx] master: Add test for experiments.identifiers() method. This appears to kill the test :( (d79d547c2)
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CCTBX commit |
Fri, 20 Apr 2018 13:41:14 +0100 |
82 lines |
[git/cctbx] master: dxtbx/model/crystal.h: add constructor from A matrix (#175) (9cec75049)
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CCTBX commit |
Fri, 20 Apr 2018 11:18:36 +0100 |
305 lines |
[git/cctbx] master: Not OK: remove "print OK" from all dxtbx tests. (d7be89a0b)
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CCTBX commit |
Fri, 20 Apr 2018 08:58:01 +0100 |
2122 lines |
[git/cctbx] master: Probably a fix, no tests to verify. Original was not working for sure. (c761275a0)
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CCTBX commit |
Thu, 19 Apr 2018 18:16:01 -0700 |
78 lines |
[git/cctbx] master: reach correct object (86524aafb)
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CCTBX commit |
Thu, 19 Apr 2018 18:06:49 -0700 |
103 lines |
[git/cctbx] master: HKL slice viewer (70656f12a)
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CCTBX commit |
Thu, 19 Apr 2018 17:39:15 -0700 |
1305 lines |
[git/cctbx] master: Add function to set/unset ramachandran restraints. Some refactoring to support using model in phenix.real_space_refine. Fix one of molprobity tests. (6a166b33b)
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CCTBX commit |
Thu, 19 Apr 2018 16:18:18 -0700 |
707 lines |
[git/cctbx] master: Added a test (2768e7069)
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CCTBX commit |
Thu, 19 Apr 2018 15:32:19 +0100 |
296 lines |
[git/cctbx] master: Adding identifier to experiment (91052b73f)
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CCTBX commit |
Thu, 19 Apr 2018 15:32:19 +0100 |
581 lines |
[git/cctbx] master: Must ensure proper linkage to OpenMP library on Windows. Otherwise module won't load in python (023b108cb)
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CCTBX commit |
Thu, 19 Apr 2018 12:50:51 +0100 |
94 lines |
[git/cctbx] master: clean clutter (8a7162a78)
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CCTBX commit |
Wed, 18 Apr 2018 20:38:42 -0600 |
51 lines |
[git/cctbx] master: Use symmetry instead of ncs where possible (ea6907de5)
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CCTBX commit |
Wed, 18 Apr 2018 20:20:17 -0600 |
518 lines |
[git/cctbx] master: Bugfix (259359632)
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CCTBX commit |
Wed, 18 Apr 2018 17:39:11 -0700 |
81 lines |
[git/cctbx] master: Radial average: use imageset instead of format instance. (a8324f1be)
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CCTBX commit |
Wed, 18 Apr 2018 17:05:02 -0700 |
293 lines |
[git/cctbx] master: last import fix broke the test. Now both work. (be3f16dd3)
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CCTBX commit |
Wed, 18 Apr 2018 16:10:15 -0700 |
81 lines |
[git/cctbx] master: fixing import "bug" again (a0eca69a7)
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CCTBX commit |
Wed, 18 Apr 2018 16:06:47 -0700 |
108 lines |
[git/cctbx] master: XFEL gui: add mask to cctbx.xfel.process (c21a063fa)
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CCTBX commit |
Wed, 18 Apr 2018 15:41:21 -0700 |
87 lines |
[git/cctbx] master: fix for name change (29298a908)
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CCTBX commit |
Wed, 18 Apr 2018 15:11:39 -0700 |
79 lines |
[git/cctbx] master: fix case where max_ops is not defined (8e1d565fe)
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CCTBX commit |
Wed, 18 Apr 2018 15:03:14 -0700 |
74 lines |
[git/cctbx] master: add test for map_symmetry (de31922e4)
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CCTBX commit |
Wed, 18 Apr 2018 16:00:14 -0600 |
251 lines |
[git/cctbx] master: adding ice ring to pilatus example and fixing pivot import "bug" (10e41528a)
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CCTBX commit |
Wed, 18 Apr 2018 14:44:06 -0700 |
172 lines |
[git/cctbx] master: DataManager: map_coefficients handles multiple files (b89b35ea0)
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CCTBX commit |
Wed, 18 Apr 2018 14:38:52 -0700 |
153 lines |
[git/cctbx] master: skip optimization if unnecessary (90ef086ba)
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CCTBX commit |
Wed, 18 Apr 2018 15:16:39 -0600 |
102 lines |
[git/cctbx] master: renaming per Nigel's suggestion. (601ab159e)
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CCTBX commit |
Wed, 18 Apr 2018 14:04:48 -0700 |
489 lines |
[git/cctbx] master: Catch case with very low resolution peak (2f0dd67a8)
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CCTBX commit |
Wed, 18 Apr 2018 14:21:57 -0600 |
90 lines |
[git/cctbx] master: Update optimization of helical symmetry (46f684240)
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CCTBX commit |
Wed, 18 Apr 2018 14:18:09 -0600 |
418 lines |
[git/cctbx] master: Using freshly discovered function for command-line programs. Now this is official way of doing default stuff. (c03b00286)
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CCTBX commit |
Wed, 18 Apr 2018 13:16:01 -0700 |
275 lines |
[git/cctbx] master: Placeholder for phenix.fix_cablam. With test. (a2e4d1dac)
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CCTBX commit |
Wed, 18 Apr 2018 12:51:46 -0700 |
564 lines |
[git/cctbx] master: refactoring idea (e343bf552)
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CCTBX commit |
Wed, 18 Apr 2018 12:51:46 -0700 |
89 lines |
[git/cctbx] master: testing sandbox (e419467b2)
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CCTBX commit |
Wed, 18 Apr 2018 12:20:49 -0700 |
66 lines |
[git/cctbx] master: tst_nanoBragg_pilatus.py will create a Pilatus-like image, complete with bad pixels, window panes, thickness effects, module-to-module misalignment and 0.1 deg of phi rotation. It takes one optional argument, which is the image number in a sequence of 3600. I've processed this simulated data set with xia2 and XDS and found the anomalous signal has the right sign. (ba8a47b7b)
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CCTBX commit |
Wed, 18 Apr 2018 12:20:49 -0700 |
2631 lines |
[git/cctbx] master: DataManager: remove unused import for map_coefficients (d984ae4e4)
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CCTBX commit |
Wed, 18 Apr 2018 10:41:56 -0700 |
79 lines |
[git/cctbx] master: DataManager: initial code for map_coefficients (d22010521)
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CCTBX commit |
Wed, 18 Apr 2018 10:40:06 -0700 |
413 lines |
Jenkins 5b cctbx MacOS build 2403 Fixed
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Wed, 18 Apr 2018 18:27:18 +0100 |
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[git/cctbx] master: using omptbx/omp_or_stubs.h as per Nick Sauter's suggestion (09a6e1125)
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CCTBX commit |
Wed, 18 Apr 2018 18:11:45 +0100 |
74 lines |
Jenkins 5b cctbx MacOS build 2402 Failure
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DLS Jenkins |
Wed, 18 Apr 2018 17:44:31 +0100 |
174 lines |
[git/cctbx] master: Must ensure proper linkage to OpenMP library on Windows. Otherwise module won't load in python (b46ed35d9)
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CCTBX commit |
Wed, 18 Apr 2018 17:18:48 +0100 |
99 lines |
[git/cctbx] master: clean clutter (e87fc9684)
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CCTBX commit |
Wed, 18 Apr 2018 08:51:00 -0600 |
280 lines |
[git/cctbx] master: Optimize helical symmetry ops (f8018110f)
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CCTBX commit |
Wed, 18 Apr 2018 08:38:14 -0600 |
2159 lines |
Jenkins 5a cctbx Tests build 6417 Fixed
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DLS Jenkins |
Wed, 18 Apr 2018 08:26:06 +0100 |
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Jenkins 5b cctbx MacOS build 2398 Fixed
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DLS Jenkins |
Wed, 18 Apr 2018 08:22:09 +0100 |
38 lines |
[git/cctbx] master: fix some weird python variable scoping issue (75751ba07)
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CCTBX commit |
Wed, 18 Apr 2018 08:20:11 +0100 |
115 lines |
Jenkins 5a cctbx Tests build 6416 Failure
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DLS Jenkins |
Wed, 18 Apr 2018 08:13:51 +0100 |
170 lines |
[git/cctbx] master: fix package management for pip version >=10 (c10703993)
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CCTBX commit |
Wed, 18 Apr 2018 08:12:56 +0100 |
87 lines |
Jenkins 5b cctbx MacOS build 2397 Unstable
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Wed, 18 Apr 2018 06:30:44 +0100 |
35 lines |
[git/cctbx] master: Commenting out and marking for deletion obsolete functionality with test. Probably will remove it in a week if nothing will come up. (ca4d42e09)
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CCTBX commit |
Tue, 17 Apr 2018 17:06:33 -0700 |
643 lines |
[git/cctbx] master: Major cleanup first time since I implemented it. Got rid of a lot of nonsence code somehow accuulated here over past several years. The only true and potentially useful functionality that I removed is filters. However, filters are not used anywhere and it is not clear if they ever will be used. It's trivial to restore anyway. (15c442f91)
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CCTBX commit |
Tue, 17 Apr 2018 12:43:38 -0700 |
1065 lines |
[git/cctbx] master: iotbx: centralize location for CIF/MTZ data labels (4c4a99a38)
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CCTBX commit |
Tue, 17 Apr 2018 11:15:38 -0700 |
627 lines |
[git/cctbx] master: Plot run stats from experiments: use integrated instead of indexed reflections and sync with interface changes to plot_run_stats() (d930fd327)
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CCTBX commit |
Tue, 17 Apr 2018 10:36:05 -0700 |
268 lines |
[git/cctbx] master: XFEL GUI run stats plotting: futher updates for multiple lattices (b425f6826)
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Tue, 17 Apr 2018 10:36:04 -0700 |
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[git/cctbx] master: cc (0a7cfd135)
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Tue, 17 Apr 2018 10:31:08 -0700 |
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[git/cctbx] master: more useful traceback when import modules test fails (f11f940ce)
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Tue, 17 Apr 2018 17:21:47 +0100 |
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[git/cctbx] master: windows build now using python2.7.14_x86_64_plus_relocatable.zip with additional modules required by Dials (4a087f7fb)
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Tue, 17 Apr 2018 16:56:21 +0100 |
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[git/cctbx] master: fix --git-reference option (c00ad10b3)
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Tue, 17 Apr 2018 14:56:23 +0100 |
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Jenkins 5a cctbx Tests build 6405 Fixed
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Tue, 17 Apr 2018 09:46:23 +0100 |
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[git/cctbx] master: Bootstrap now works with newly released pip version 10 (e74723951)
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Tue, 17 Apr 2018 08:54:01 +0100 |
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[git/cctbx] master: Further fix for second half of https://github.com/pypa/pip/issues/5156 (69f7ee156)
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Tue, 17 Apr 2018 08:39:20 +0100 |
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[git/cctbx] master: compatibility fix with pip v10 (000b01c69)
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Tue, 17 Apr 2018 08:22:42 +0100 |
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[git/cctbx] master: Removing obsolete functionality (afbd7f7f3)
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Mon, 16 Apr 2018 18:12:42 -0700 |
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[git/cctbx] master: Moving pdbtools closer to model. Test for segid manipulations. (d64ac4458)
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Mon, 16 Apr 2018 17:43:07 -0700 |
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[git/cctbx] master: Unifying extract_ss in pdb_input and mmcif_input, fixing handling of these in SS restraints manager. (b0e0c9217)
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Mon, 16 Apr 2018 14:46:20 -0700 |
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[git/cctbx] master: Restoring lost functionality in pdbtools to clear/set segids. (fbcc4f2fa)
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Mon, 16 Apr 2018 14:46:20 -0700 |
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[git/cctbx] master: DataManager: rename ncs datatype to ncs_spec (72574f86c)
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Mon, 16 Apr 2018 11:40:37 -0700 |
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[git/cctbx] master: Update map_symmetry (29d0657a9)
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Mon, 16 Apr 2018 12:20:06 -0600 |
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[git/cctbx] master: Program template: simple function for running template (9fdb614e2)
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Mon, 16 Apr 2018 10:18:44 -0700 |
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[git/cctbx] master: DataManager: fix function name (has_ncss -> has_ncs) (a492e644f)
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Mon, 16 Apr 2018 10:01:04 -0700 |
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[git/cctbx] master: DataManager: add support for ncs spec (c8a44ed51)
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Mon, 16 Apr 2018 09:33:39 -0700 |
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Jenkins 5b cctbx MacOS build 2381 Fixed
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Mon, 16 Apr 2018 07:06:59 -0600 |
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Jenkins 5b cctbx MacOS build 2380 Unstable
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Mon, 16 Apr 2018 06:14:49 -0600 |
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[git/cctbx] master: Add map_symmetry (7d50769a5)
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Sun, 15 Apr 2018 20:47:09 -0600 |
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[git/cctbx] master: clean_clutter (8320208f9)
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Sun, 15 Apr 2018 16:43:06 -0600 |
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[git/cctbx] master: Allow keeping origin in map_box (bc2f30eff)
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Sun, 15 Apr 2018 16:34:50 -0600 |
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[git/cctbx] master: more flexible binning for CDL (b5313d16e)
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Sat, 14 Apr 2018 11:34:50 -0700 |
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[git/cctbx] master: clean clutter (b0c7d3658)
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Sat, 14 Apr 2018 10:13:11 -0700 |
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[git/cctbx] master: fix write_output_maps=False in map_box (e68cf29dd)
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Sat, 14 Apr 2018 10:00:45 -0700 |
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[git/cctbx] master: Update Sphinx (4183fde63)
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Sat, 14 Apr 2018 15:28:08 +0100 |
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[git/cctbx] master: Updates and tweaks to sphinx documentation building (368cc6e2a)
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Sat, 14 Apr 2018 15:27:57 +0100 |
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[git/cctbx] master: Pre-refactoring code-review and suggestions. (1332926b3)
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Fri, 13 Apr 2018 17:37:32 -0700 |
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[git/cctbx] master: Add jungfrau as a known detector in the XFEL gui (140a7afb2)
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Fri, 13 Apr 2018 15:59:26 -0700 |
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[git/cctbx] master: test for creating mmtbx.model from hierarchy (353a5846f)
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Fri, 13 Apr 2018 15:33:53 -0700 |
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[git/cctbx] master: DataManager: initial code for miller_array (f4b117a7a)
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Fri, 13 Apr 2018 14:25:08 -0700 |
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[git/cctbx] master: FormatXTC: move populate_events out of subclasses, and use it instead of the event_list (89fb6679e)
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Fri, 13 Apr 2018 13:04:24 -0700 |
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[git/cctbx] master: Remove dangerous pattern of producing GRM. (6006f7d75)
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Fri, 13 Apr 2018 12:37:57 -0700 |
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[git/cctbx] master: Remove dangerous pattern of producing GRM. (b46835ebc)
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Fri, 13 Apr 2018 12:37:57 -0700 |
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[git/cctbx] master: Also drop processed_pdb_file because it contains significant part of GRM. (adc4ba0e2)
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Fri, 13 Apr 2018 12:37:57 -0700 |
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[git/cctbx] master: Fighting dangerous pattern of getting GRM (8f6b952b4)
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Fri, 13 Apr 2018 12:37:57 -0700 |
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[git/cctbx] master: Remove global variable. (7ea778270)
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Fri, 13 Apr 2018 12:37:57 -0700 |
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[git/cctbx] master: Remove dangerous pattern. (bb2a5c8b9)
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Fri, 13 Apr 2018 12:37:57 -0700 |
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[git/cctbx] master: Putting in python3 compatibility (d18f6a624)
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Fri, 13 Apr 2018 10:43:39 -0700 |
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[git/cctbx] master: Changes to handle frames with missing wavelength. Also get_event function has been moved to FormatXTC (a87ca4173)
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Fri, 13 Apr 2018 10:28:54 -0700 |
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[git/cctbx] master: Cleaning clutter for FormatXTCJungfrau (2f2b36bd7)
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Fri, 13 Apr 2018 10:21:28 -0700 |
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[git/cctbx] master: Adding XTC reader for Jungfrau 1M detector at LCLS (ad356c0b8)
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Fri, 13 Apr 2018 10:00:24 -0700 |
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[git/cctbx] master: Be smarter about path quoting in test runner (7c07da608)
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Fri, 13 Apr 2018 15:14:16 +0100 |
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[git/cctbx] master: fix libtbx execution of pytests on Windows (ec0ecdfaa)
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Fri, 13 Apr 2018 14:25:51 +0100 |
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[git/cctbx] master: Add mechanism for .tgz files and be more error tolerant (9a2a50f02)
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Fri, 13 Apr 2018 09:57:05 +0100 |
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[git/cctbx] master: XFEL GUI: add a spotfinder tab for LS49. (b53bffe8a)
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Thu, 12 Apr 2018 19:47:37 -0700 |
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[git/cctbx] master: XFEL GUI: no main method -- redundant with command line version. (8d33a9433)
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Thu, 12 Apr 2018 19:47:36 -0700 |
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[git/cctbx] master: GUI update - faster old run recovery (c3db78064)
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Thu, 12 Apr 2018 18:17:35 -0700 |
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[git/cctbx] master: Implement processing XTC streams directly without a CBF intermediary, by way of FormatXTC (5b2c497eb)
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Thu, 12 Apr 2018 17:03:33 -0700 |
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[git/cctbx] master: Few more FormatXTC tweaks (55400341e)
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Thu, 12 Apr 2018 16:22:51 -0700 |
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[git/cctbx] master: Add image_number parameter to dxtbx.radial_average (fac871b87)
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Thu, 12 Apr 2018 16:20:08 -0700 |
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[git/cctbx] master: CCTBXParse: parse files defined in PHIL (46377caa0)
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Thu, 12 Apr 2018 15:43:51 -0700 |
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[git/cctbx] master: Move set_up_and_apply_soft_mask to separate method (265ddbd68)
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Thu, 12 Apr 2018 15:48:13 -0600 |
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[git/cctbx] master: Add --wxpython4 option to bootstrap. Closes #171 and is prerequisite to #170 (a56103bec)
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Thu, 12 Apr 2018 22:33:54 +0100 |
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[git/cctbx] master: Set OPENBLAS_NUM_THREADS in dispatchers (90839ddca)
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Thu, 12 Apr 2018 12:08:33 -0700 |
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Jenkins 5a cctbx Tests build 6355 Fixed
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[git/cctbx] master: make print() changes to format classes where trivial (f9003d413)
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Thu, 12 Apr 2018 10:56:26 +0100 |
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[git/cctbx] master: fix remaining test (ac17710ff)
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Thu, 12 Apr 2018 10:56:26 +0100 |
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Jenkins 5a cctbx Tests build 6354 Still Unstable
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Thu, 12 Apr 2018 10:39:28 +0100 |
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[git/cctbx] master: Fixed bug in path (298f6d3d9)
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Thu, 12 Apr 2018 10:31:52 +0100 |
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Jenkins 5a cctbx Tests build 6353 Still Unstable
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[git/cctbx] master: This test is pining for the fjords. (fba3fcbd5)
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Thu, 12 Apr 2018 09:40:08 +0100 |
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Jenkins 5a cctbx Tests build 6352 Unstable
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[git/cctbx] master: Expand variables in path before testing whether it is absolute or not (f33316305)
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Thu, 12 Apr 2018 09:22:02 +0100 |
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[git/cctbx] master: Convert monolithic test to a pytest to aid in problem identification (d21f93afd)
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Thu, 12 Apr 2018 09:21:37 +0100 |
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[git/cctbx] master: proper type (139bb0c32)
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Wed, 11 Apr 2018 17:59:15 -0700 |
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[git/cctbx] master: Run ensurepip separately from the python configuration (c0f906d9a)
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Wed, 11 Apr 2018 15:55:55 +0100 |
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Jenkins 5a cctbx Tests build 6348 Fixed
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[git/cctbx] master: Only run test if DIALS is available (4016c930d)
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Wed, 11 Apr 2018 15:16:56 +0100 |
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Jenkins 5a cctbx Tests build 6347 Unstable
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[git/cctbx] master: Remove DIALS extensions, fixes #167. (9ae0d3bc4)
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Wed, 11 Apr 2018 14:58:15 +0100 |
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[git/cctbx] master: Disable user site directory before building python (74cd90dfa)
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Wed, 11 Apr 2018 13:59:21 +0100 |
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[git/cctbx] master: Removed temp_chdir context manager. Fixes #150 (2baca7cf9)
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Wed, 11 Apr 2018 13:56:03 +0100 |
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Jenkins 5b cctbx MacOS build 2347 Fixed
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Jenkins 5b cctbx MacOS build 2346 Failure
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Wed, 11 Apr 2018 01:00:52 +0100 |
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[git/cctbx] master: First attempt to use hybrid36 for SS annotations (7427b4709)
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Tue, 10 Apr 2018 16:43:24 -0700 |
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[git/cctbx] master: Changing tests. This partiular field in mmCIF is just characters. (b398cd824)
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Tue, 10 Apr 2018 16:43:24 -0700 |
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[git/cctbx] master: Fix bug: NCS multiplication with separated chains. Make sure tests are actually using correct answer. (2441115cd)
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Tue, 10 Apr 2018 16:43:24 -0700 |
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[git/cctbx] master: XFEL UI: hook up the averaging button (4a91ae09b)
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Tue, 10 Apr 2018 15:20:14 -0700 |
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[git/cctbx] master: clean clutter (8df540fcc)
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Tue, 10 Apr 2018 16:10:05 -0600 |
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[git/cctbx] master: Allow optimization of placed model (0eb7b0020)
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Tue, 10 Apr 2018 15:54:33 -0600 |
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[git/cctbx] master: Enable import of eiger hdf5 files in import_xds. Fixes dials/dials#529 (ac31b2f91)
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Tue, 10 Apr 2018 17:14:16 +0100 |
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[git/cctbx] master: drop libtbx env dependency (34884982d)
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Tue, 10 Apr 2018 13:52:23 +0100 |
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[git/cctbx] master: Order formats in registry by alphabetical order (dd1bd6508)
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Tue, 10 Apr 2018 13:18:08 +0100 |
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[git/cctbx] master: Added some more helpful error messages in ImageSet class (1be974736)
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Tue, 10 Apr 2018 10:49:24 +0100 |
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[git/cctbx] master: Fixed check (df067d7b5)
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Tue, 10 Apr 2018 10:49:24 +0100 |
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[git/cctbx] master: allow logging to be used in dxtbx like in a proper library (153fc21e8)
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Tue, 10 Apr 2018 08:46:16 +0100 |
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[git/cctbx] master: fix typo (c4b2fb62b)
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Tue, 10 Apr 2018 08:28:02 +0100 |
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[git/cctbx] master: Don't install from the base_tmp cache directory when files have not been downloaded there (29eae5f39)
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Tue, 10 Apr 2018 07:50:59 +0100 |
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[git/cctbx] master: XFEL UI: fix sliding windows for multiple lattice local rates (97eef3b39)
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Mon, 9 Apr 2018 14:55:54 -0700 |
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[git/cctbx] master: FormatXTC tweaks (a24704607)
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Mon, 9 Apr 2018 11:04:50 -0700 |
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[git/cctbx] master: define target_b_iso_to_d_cut (6eb383b23)
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Mon, 9 Apr 2018 08:51:19 -0700 |
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[git/cctbx] master: define target_b_iso_to_d_cut (ec0a5df20)
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Mon, 9 Apr 2018 08:50:39 -0700 |
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[git/cctbx] master: Simplify python pip builder (1637273a9)
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Mon, 9 Apr 2018 15:50:26 +0100 |
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[git/cctbx] master: Fix bootstrap on Mac, resolves #160. (904792a27)
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Mon, 9 Apr 2018 15:48:58 +0100 |
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Sun, 8 Apr 2018 17:48:38 -0600 |
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[git/cctbx] master: allow iteration in auto-sharpen (4171caaaa)
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Sun, 8 Apr 2018 17:38:15 -0600 |
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[git/cctbx] master: analysis tab bugfixes (c6268c0eb)
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Fri, 6 Apr 2018 18:20:58 -0700 |
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[git/cctbx] master: analysis tab bugfix (27fd68a8f)
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Fri, 6 Apr 2018 17:45:25 -0700 |
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[git/cctbx] master: analyzer bugfix (7b74d6f5f)
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Fri, 6 Apr 2018 17:43:02 -0700 |
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[git/cctbx] master: XFEL GUI: move logging out of xtc_process (f9d1cc864)
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Fri, 6 Apr 2018 14:53:40 -0700 |
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[git/cctbx] master: Bugfix for job submission in XFEL gui (c73042237)
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Fri, 6 Apr 2018 14:01:28 -0700 |
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[git/cctbx] master: save ncs cc (2dd4ee0a9)
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Fri, 6 Apr 2018 15:01:01 -0600 |
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[git/cctbx] master: clean clutter (dc96110d6)
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Fri, 6 Apr 2018 14:13:33 -0600 |
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[git/cctbx] master: allow sequence from pdb file (02dbf2aeb)
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Fri, 6 Apr 2018 13:43:55 -0600 |
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[git/cctbx] master: FormatXTC: allow data source to be specified as experiment and run in the locator file. This allows the mode to be optional (default smd). (a8b931e53)
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Fri, 6 Apr 2018 12:38:00 -0700 |
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[git/cctbx] master: Bugfix for striping: sort filenames. (790599e06)
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Fri, 6 Apr 2018 11:03:31 -0700 |
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[git/cctbx] master: Add extra filters (filter by detector or by deltapsi) (871692779)
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Fri, 6 Apr 2018 11:02:51 -0700 |
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[git/cctbx] master: Allow datablocks (a3c5e9004)
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Fri, 6 Apr 2018 11:02:26 -0700 |
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Jenkins 5a cctbx Tests build 6313 Fixed
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[git/cctbx] master: bug fix for h5 files: write template expected by xds (fbb71b93e)
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Fri, 6 Apr 2018 14:35:10 +0100 |
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Jenkins 5a cctbx Tests build 6312 Unstable
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Fri, 6 Apr 2018 06:41:52 -0600 |
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Jenkins 5a cctbx Tests build 6310 Fixed
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Fri, 6 Apr 2018 07:53:17 +0100 |
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[git/cctbx] master: Revert "This file belongs to fable." (cf53dc694)
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Fri, 6 Apr 2018 07:39:50 +0100 |
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[git/cctbx] master: working update of segment_and_split to allow passing in sequence and ncs_object (c194d6e4a)
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Thu, 5 Apr 2018 21:38:16 -0600 |
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[git/cctbx] master: Validation: update to use model (f7d0fd28a)
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Thu, 5 Apr 2018 16:53:20 -0700 |
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Jenkins 5a cctbx Tests build 6307 Unstable
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[git/cctbx] master: GUI updates (f7cacb5da)
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Thu, 5 Apr 2018 16:18:00 -0700 |
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[git/cctbx] master: cluster - moved imports outside of for loop (6c50b93ce)
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Thu, 5 Apr 2018 16:17:59 -0700 |
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[git/cctbx] master: save info file (c187170ab)
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Thu, 5 Apr 2018 14:44:28 -0600 |
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[git/cctbx] master: fix end of xrange (96da2033b)
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Thu, 5 Apr 2018 13:03:21 -0700 |
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[git/cctbx] master: Remove boost_adaptbx from PYTHONPATH. Closes #149 (032d4e1a1)
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Thu, 5 Apr 2018 20:59:24 +0100 |
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[git/cctbx] master: Catch case where there are no atoms (3cbf905ba)
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Thu, 5 Apr 2018 12:50:39 -0700 |
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[git/cctbx] master: fix typo (220bc27df)
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Thu, 5 Apr 2018 12:54:03 -0600 |
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[git/cctbx] master: small change to rounding function (6007ec965)
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Thu, 5 Apr 2018 11:20:40 -0700 |
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Jenkins 5b cctbx MacOS build 2324 Fixed
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[git/cctbx] master: Fix underlying reason for the missing rt library (67451411e)
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Jenkins 5b cctbx MacOS build 2321 Failure
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[git/cctbx] master: libtbx.pkg_utils: tolerate missing package features (937e7d530)
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[git/cctbx] master: On python3 boost_threads.so must link to rt for whatever reason. (4cac27adb)
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Thu, 5 Apr 2018 16:59:08 +0100 |
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[git/cctbx] master: More SConscript cleanup (5f287498f)
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Thu, 5 Apr 2018 16:21:19 +0100 |
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[git/cctbx] master: Remove Python2.3 optimizations and re-enable deprecation warning from 2008. (bf2b08ea1)
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Thu, 5 Apr 2018 15:37:37 +0100 |
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[git/cctbx] master: Don't use string.join, not even in SConscript (22779eac7)
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Thu, 5 Apr 2018 14:58:16 +0100 |
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[git/cctbx] master: Some semantic changes for Python3 conversion, #80 (1321f6860)
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Thu, 5 Apr 2018 14:34:56 +0100 |
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[git/cctbx] master: Remaining trivial Python3 conversions for build step (a721607d2)
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Thu, 5 Apr 2018 14:09:57 +0100 |
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[git/cctbx] master: Fable: Python3 conversion: xrange, cStringIO, sorting with keys (965561873)
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[git/cctbx] master: Fable: code cleanup and remove unneeded imports (881af38e3)
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Thu, 5 Apr 2018 14:01:51 +0100 |
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[git/cctbx] master: Fable: Python3 conversion for print statements and relative imports (40c0a147c)
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Thu, 5 Apr 2018 13:52:30 +0100 |
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[git/cctbx] master: This file belongs to fable. (6b1a88ee6)
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Thu, 5 Apr 2018 13:39:24 +0100 |
518 lines |
[git/cctbx] master: It's a harmless windows lowercase uppercase thing. (a55ed2ff1)
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Thu, 5 Apr 2018 13:15:02 +0100 |
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[git/cctbx] master: Investigate why this breaks on Windows (969ac63ee)
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Thu, 5 Apr 2018 13:03:01 +0100 |
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[git/cctbx] master: Stick to officially documented functions of Python-internal libraries (28e3c5a3f)
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Thu, 5 Apr 2018 11:45:20 +0100 |
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[git/cctbx] master: Use internal python API to determine include path (4ea5f46e4)
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Thu, 5 Apr 2018 11:44:24 +0100 |
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[git/cctbx] master: Remove -Q parameter from dispatchers when in Python3 environment (3905c7249)
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Thu, 5 Apr 2018 11:31:33 +0100 |
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Jenkins 5b cctbx MacOS build 2316 Fixed
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Thu, 5 Apr 2018 09:06:33 +0100 |
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[git/cctbx] master: more idiomatic fix for #164 (d7d2a513d)
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Thu, 5 Apr 2018 07:01:19 +0100 |
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[git/cctbx] master: Someone left unused import, yt blamed by phenix buildbot (443422fd9)
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Thu, 5 Apr 2018 07:00:54 +0100 |
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Jenkins 5a cctbx Tests build 6283 Fixed
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Thu, 5 Apr 2018 06:44:38 +0100 |
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[git/cctbx] master: Only dereference exposure time if > 0 images; fixes #164 (65ac9e51a)
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Thu, 5 Apr 2018 06:35:08 +0100 |
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[git/cctbx] master: XFEL GUI: update dispatchers (d5c1f4226)
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Wed, 4 Apr 2018 19:04:44 -0700 |
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[git/cctbx] master: bugfix (a8c68f657)
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Wed, 4 Apr 2018 16:48:36 -0700 |
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[git/cctbx] master: XFEL GUI: second lattices (946c41b70)
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Wed, 4 Apr 2018 16:32:52 -0700 |
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Jenkins 5b cctbx MacOS build 2315 Failure
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Wed, 4 Apr 2018 22:57:39 +0100 |
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Jenkins 5a cctbx Tests build 6278 Unstable
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Wed, 4 Apr 2018 22:43:08 +0100 |
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[git/cctbx] master: Add test for bug found by James Holton (1fa7ebf40)
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Wed, 4 Apr 2018 22:35:08 +0100 |
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[git/cctbx] master: python3 changes in dxtbx (6e0b48a07)
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Wed, 4 Apr 2018 21:58:46 +0100 |
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[git/cctbx] master: more python3 conversion (1958cbe0d)
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Wed, 4 Apr 2018 21:37:28 +0100 |
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[git/cctbx] master: Python3 syntax (087cc6da1)
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Wed, 4 Apr 2018 17:09:13 +0100 |
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[git/cctbx] master: python3 compatibility change (dbbea5695)
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Wed, 4 Apr 2018 14:37:39 +0100 |
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[git/cctbx] master: Fix minor operator precedence error in rstbx (7ee844905)
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Wed, 4 Apr 2018 05:40:36 -0700 |
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[git/cctbx] master: remove unused import (dbb2c8217)
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Tue, 3 Apr 2018 21:02:35 -0600 |
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[git/cctbx] master: allow add_identity_op (6a151ae91)
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Tue, 3 Apr 2018 20:49:12 -0600 |
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[git/cctbx] master: allow selection of first ncs operator (8dbd29ed6)
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Tue, 3 Apr 2018 17:24:07 -0600 |
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[git/cctbx] master: Validation: clashscore bug fix (b33d0cd67)
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Tue, 3 Apr 2018 11:07:34 -0700 |
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[git/cctbx] master: Use Python bundle with updated pip for base installation, part of solution for #160 (6eb212de4)
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Tue, 3 Apr 2018 13:05:17 +0100 |
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Jenkins 5a cctbx Tests build 6266 Fixed
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Tue, 3 Apr 2018 09:50:36 +0100 |
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[git/cctbx] master: fix typo, and more python3 syntax compatibility (26319bf0d)
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Tue, 3 Apr 2018 09:41:12 +0100 |
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Jenkins 5a cctbx Tests build 6265 Failure
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Tue, 3 Apr 2018 09:22:48 +0100 |
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[git/cctbx] master: python3 syntax compatibility (8f75fffcc)
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Tue, 3 Apr 2018 09:21:34 +0100 |
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[git/cctbx] master: Correct descr (cea780dd5)
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Mon, 2 Apr 2018 13:00:00 -0700 |
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[git/cctbx] master: Write out models for callbacks (ac8506915)
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Sun, 1 Apr 2018 08:25:29 -0600 |
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