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Subject	From	Date	Size
[git/cctbx_project] master: clean clutter (e0d200e37c)	CCTBX commit	Wed, 31 Aug 2022 09:49:58 -0600	61 lines
[git/cctbx_project] master: Add get_map_rmse; fix expected output (7b1c52f62b)	CCTBX commit	Wed, 31 Aug 2022 08:33:09 -0700	731 lines
[git/cctbx_project] master: Resolution check was too stringent and failed in some cases. (55c15e4aad)	CCTBX commit	Wed, 31 Aug 2022 14:54:42 +0100	103 lines
[git/cctbx_project] master: Catch blank chain_name in process_predicted_model (50c98e6b7b)	CCTBX commit	Wed, 31 Aug 2022 06:50:04 -0600	136 lines
[git/cctbx_project] master: Catch bad model file in process_predicted_model (43687d5e78)	CCTBX commit	Wed, 31 Aug 2022 06:38:46 -0600	229 lines
[git/cctbx_project] master: Revert "Further changes to build Kokkos" (8b5d169a20)	CCTBX commit	Wed, 31 Aug 2022 11:27:13 +0000	907 lines
[git/cctbx_project] master: More robust recovering if external commands (xtriage, xtricorder) crash. (087f8f69ab)	CCTBX commit	Tue, 30 Aug 2022 20:09:07 +0100	254 lines
[git/cctbx_project] master: Further changes to build Kokkos (40cb02a68d)	CCTBX commit	Tue, 30 Aug 2022 18:44:09 +0000	902 lines
[git/cctbx_project] master: Remove unused import (b6b79cc4d4)	CCTBX commit	Mon, 29 Aug 2022 17:44:04 -0700	89 lines
[git/cctbx_project] master: add serial_format and expose output_phil_str (949301c3ab)	CCTBX commit	Mon, 29 Aug 2022 17:43:00 -0700	112 lines
[git/cctbx_project] master: CCTBXParser: start parsing DataManager parameters in the command-line (34bf95ec9e)	CCTBX commit	Mon, 29 Aug 2022 10:32:17 -0700	571 lines
[git/cctbx_project] master: Fix pdbtools convert_met_to_semet and convert_sement_to_met to work if MET/MSE residue does not contain SD or SE (bdd0bc633f)	CCTBX commit	Sat, 27 Aug 2022 04:33:57 -0700	213 lines
[git/cctbx_project] master: fix for tst_130 (d543301493)	CCTBX commit	Fri, 26 Aug 2022 16:47:45 -0700	161 lines
[git/cctbx_project] master: moving towards MgO (d577e0eba7)	CCTBX commit	Fri, 26 Aug 2022 15:13:45 -0700	266 lines
[git/cctbx_project] master: Molprobity2 debug5 (#782) (30af730ac8)	CCTBX commit	Fri, 26 Aug 2022 08:21:26 -0400	192 lines
[git/dxtbx] main: Fix test_get_dependency_chain (#547) (aa0e09d1)	DXTBX commit	Fri, 26 Aug 2022 09:43:29 +0100	106 lines
[git/cctbx_project] master: CI: update caches (1b5d76f64c)	CCTBX commit	Thu, 25 Aug 2022 13:04:46 -0700	300 lines
[git/cctbx_project] master: bootstrap: add environment variable to control rebuilding of chem_data caches (302486e81c)	CCTBX commit	Thu, 25 Aug 2022 09:38:13 -0700	142 lines
[git/dxtbx] main: Ensure NXtransformations copes gracefully with scalar values (#546) (d0a9a9e7)	DXTBX commit	Thu, 25 Aug 2022 15:49:38 +0100	167 lines
[git/dxtbx] main: Fix broken dxtbx.dlsnxs2cbf (#545) (00cba69c)	DXTBX commit	Thu, 25 Aug 2022 15:48:31 +0100	126 lines
[git/cctbx_project] master: Improve local_mean_intensities by renormalising the falloff with resolution. This tends to get distorted by the fact that there are different numbers of reflections at higher and lower resolution in the averaging sphere, which then causes problems using the local means for making E-values. Fixing this improves the docking performance. (63a96c10c6)	CCTBX commit	Thu, 25 Aug 2022 15:01:47 +0100	115 lines
[git/cctbx_project] master: conda installation path for copyright file (8fec1ecdf9)	CCTBX commit	Thu, 25 Aug 2022 15:34:58 +0200	110 lines
[git/cctbx_project] master: CI: adjust check for Azure (5b38151024)	CCTBX commit	Wed, 24 Aug 2022 20:52:31 -0700	105 lines
[git/cctbx_project] master: cctbx: slightly lower tolerance for older compiler (74b2e52f5b)	CCTBX commit	Wed, 24 Aug 2022 12:48:04 -0700	106 lines
[git/dxtbx] main: Bump version: 3.11.dev → 3.12.dev (7c9ba4ae)	DXTBX commit	Wed, 24 Aug 2022 10:13:33 +0100	111 lines
[git/dxtbx] main: dxtbx 3.11.0 Changelog (fc99794e)	DXTBX commit	Wed, 24 Aug 2022 10:13:32 +0100	321 lines
[git/dxtbx] tag 'v3.11.0' created	DXTBX commit	Wed, 24 Aug 2022 10:13:32 +0100	40 lines
[git/cctbx_project] master: update (47cefc5c81)	CCTBX commit	Tue, 23 Aug 2022 16:43:53 -0700	115 lines
[git/cctbx_project] master: better cyclic peptide linking (6836e23a30)	CCTBX commit	Tue, 23 Aug 2022 16:11:29 -0700	294 lines
[git/cctbx_project] master: quick correction (6eadfd78f6)	CCTBX commit	Tue, 23 Aug 2022 15:13:57 -0700	185 lines
[git/cctbx_project] master: finished reorg of pH (neutron) and added new tests (c0d934dc52)	CCTBX commit	Tue, 23 Aug 2022 14:53:35 -0700	241 lines
[git/cctbx_project] master: remove verbose (72fce9d808)	CCTBX commit	Tue, 23 Aug 2022 14:53:35 -0700	118 lines
[git/cctbx_project] master: verbose (91caf65ce9)	CCTBX commit	Tue, 23 Aug 2022 14:53:32 -0700	259 lines
[git/cctbx_project] master: update (b46846d046)	CCTBX commit	Tue, 23 Aug 2022 14:52:51 -0700	756 lines
[git/cctbx_project] master: used pH for neutrons and cyclic code... (ee332bd641)	CCTBX commit	Tue, 23 Aug 2022 14:52:43 -0700	1008 lines
[git/cctbx_project] master: verbose2 (7a2f0062e2)	CCTBX commit	Tue, 23 Aug 2022 14:37:54 -0700	151 lines
[git/cctbx_project] master: testing checkout single file (27a7907b59)	CCTBX commit	Tue, 23 Aug 2022 11:31:30 -0700	91 lines
[git/cctbx_project] master: Change tolerance to pass regression test while working on improved tests. (67d602804c)	CCTBX commit	Tue, 23 Aug 2022 17:33:50 +0100	96 lines
[git/cctbx_project] master: Molprobity2 debug4 rebase (#779) (7197eb7273)	CCTBX commit	Tue, 23 Aug 2022 08:09:44 -0400	184 lines
[git/cctbx_project] master: moved and improved DDR (bdab7443cb)	CCTBX commit	Mon, 22 Aug 2022 16:32:37 -0700	265 lines
[git/cctbx_project] master: better amino acids utils (9b98f49736)	CCTBX commit	Mon, 22 Aug 2022 16:32:37 -0700	461 lines
[git/cctbx_project] master: add neutron atom names (ca04e4678a)	CCTBX commit	Mon, 22 Aug 2022 16:32:37 -0700	127 lines
[git/cctbx_project] master: format change (3d56dedda3)	CCTBX commit	Mon, 22 Aug 2022 16:32:37 -0700	187 lines
[git/cctbx_project] master: better docstrings (ab5c047949)	CCTBX commit	Mon, 22 Aug 2022 16:32:37 -0700	189 lines
[git/cctbx_project] master: Don't require user to supply information for unknown residues in a model used as reference. (b932034694)	CCTBX commit	Mon, 22 Aug 2022 13:38:47 -0700	94 lines
[git/cctbx_project] master: Deal with no map case (69af4262a0)	CCTBX commit	Mon, 22 Aug 2022 13:05:13 -0700	134 lines
[git/cctbx_project] master: Failing test to exemplify the need to improve fit_residues inputs handling. (ff7fef1b06)	CCTBX commit	Mon, 22 Aug 2022 12:08:35 -0700	181 lines
[git/cctbx_project] master: newarray should be of the same observation_type as first input miller_array when computed from two miller_arrays (6b55c30fa6)	CCTBX commit	Sun, 21 Aug 2022 23:04:04 +0100	96 lines
[git/cctbx_project] master: Treat PRO as a special case in rotamer fitting. Previous version could completely destroy PRO. (Fixed thanks Basil Greber) (428da991fd)	CCTBX commit	Sat, 20 Aug 2022 12:46:17 -0700	553 lines
[git/cctbx_project] master: Asymmetric cell for map was not ideal for the local averaging method of assessing variances, so model definition changed to make it closer to spherical. Because the model is bigger, reduce resolution and increase size of errors and anisotropy to keep this problem challenging. (0bdd9e62e7)	CCTBX commit	Sat, 20 Aug 2022 20:11:31 +0100	204 lines
[git/cctbx_project] master: Major bug: fix factor of 2 in the map signal variance term. Numerical stability issue: the FFT method to obtain local mean intensities can't cope with too wide a dynamic range, so sharpen the input intensity data before running it, then remove the sharpening afterwards. (3a9cb8f042)	CCTBX commit	Sat, 20 Aug 2022 20:11:31 +0100	407 lines
[git/cctbx_project] master: Change so that verbosity level of "testing" turns on study_params tests. (7a16223b7b)	CCTBX commit	Sat, 20 Aug 2022 20:11:31 +0100	105 lines
[git/cctbx_project] master: CCTBXParser: use phil parser for more checks (92d639eb29)	CCTBX commit	Fri, 19 Aug 2022 11:57:44 -0700	158 lines
[git/cctbx_project] master: Get matching residues from any number of models and superimpose resulting partial models (481937ccbc)	CCTBX commit	Fri, 19 Aug 2022 04:20:47 -0700	156 lines
[git/cctbx_project] master: Flip back to info tab when loading a new file or creating a new miller array (35b8a8a6fd)	CCTBX commit	Fri, 19 Aug 2022 09:06:57 +0100	118 lines
[git/cctbx_project] master: Re-write the cctbx.xfel build instructions (5465a71dcd)	CCTBX commit	Wed, 17 Aug 2022 17:05:51 -0700	528 lines
[git/cctbx_project] master: CI: Bump Xcode to 13.4.1 for macos 12 (f3aa601827)	CCTBX commit	Wed, 17 Aug 2022 13:07:06 -0700	94 lines
[git/cctbx_project] master: Reduce annoyance: Don't reset PHIL when displaying another dataset after a preset button has been applied (01e95c6698)	CCTBX commit	Wed, 17 Aug 2022 17:41:11 +0100	131 lines
[git/cctbx_project] master: Bug fixes for not displaying map coefficents, inadvertent clearing of BinDataComboBox (9b662de7c1)	CCTBX commit	Wed, 17 Aug 2022 15:57:57 +0100	118 lines
[git/cctbx_project] master: hide buttons that are disabled on QuickView tab (06e6cb8dfb)	CCTBX commit	Wed, 17 Aug 2022 09:33:50 +0100	410 lines
[git/cctbx_project] master: mmtbx: add missing import (cf9df05edd)	CCTBX commit	Tue, 16 Aug 2022 21:18:18 -0700	81 lines
[git/cctbx_project] master: Remove unused import (2d8baad8fb)	CCTBX commit	Tue, 16 Aug 2022 16:10:33 -0700	81 lines
[git/cctbx_project] master: Initial commit, rdkit utils (f581b54627)	CCTBX commit	Tue, 16 Aug 2022 15:34:34 -0700	384 lines
[git/cctbx_project] master: Don't rectify twin law rotation operators from Xtriage even if detected as being improper rotations. Don't make a vector combobox on the QuickView tab for preset buttons with no more than 1 vector. Tidy up. (21af25d127)	CCTBX commit	Tue, 16 Aug 2022 18:53:41 +0100	2408 lines
[git/cctbx_project] master: Twin axis button now in preset_buttons.phenix_buttonsdeflist (27f8895031)	CCTBX commit	Tue, 16 Aug 2022 00:13:23 +0100	257 lines
[git/cctbx_project] master: conda: check time stamps to only update environment if needed (00fccde631)	CCTBX commit	Mon, 15 Aug 2022 12:17:32 -0700	129 lines
[git/cctbx_project] master: Compacting preset buttons for displaying slices of reflections with constant H, K or L into a single button plus a dropdown list of axes. Similar for displaying different axes of twin operators emitted by Xtriage. (ef3d47405e)	CCTBX commit	Mon, 15 Aug 2022 19:11:56 +0100	2084 lines
[git/dxtbx] main: Multi-axis goniometer data in full CBF format: correctly construct a goniometer model (#539) (108e56eb)	DXTBX commit	Mon, 15 Aug 2022 08:52:04 +0100	427 lines
[git/cctbx_project] master: Rudimentary ctrl-F and F3 string search in text info and log file tabs (9b5a673dbe)	CCTBX commit	Mon, 15 Aug 2022 01:52:28 +0100	831 lines
[git/cctbx_project] master: Populating vectors table with rotation axes of twin operators found by Xtriage. Using courier fonts on info tab, verbose tab etc. (42f656be9a)	CCTBX commit	Sat, 13 Aug 2022 14:32:00 +0100	707 lines
[git/cctbx_project] master: conda: add support for explicit osx-arm64 environments (031c11f570)	CCTBX commit	Fri, 12 Aug 2022 15:55:45 -0700	119 lines
[git/cctbx_project] master: clean clutter (1978b5de8a)	CCTBX commit	Fri, 12 Aug 2022 13:10:47 -0700	61 lines
[git/cctbx_project] master: Add residue names as dict (eeabd6e7e1)	CCTBX commit	Fri, 12 Aug 2022 12:25:29 -0700	214 lines
[git/cctbx_project] master: Towards integration of Xtriage into HKLviewer (2ce63abe00)	CCTBX commit	Fri, 12 Aug 2022 18:41:44 +0100	619 lines
[git/cctbx_project] master: omit phaser_regression from phasertng regression tests (03abbb1639)	CCTBX commit	Thu, 11 Aug 2022 18:23:13 +0100	98 lines
[git/cctbx_project] master: Fix use of deprecated sigma_rdout (#771) (bfdf2c8914)	CCTBX commit	Wed, 10 Aug 2022 13:02:26 -0700	122 lines
[git/cctbx_project] master: Fix test and fix output of symop operator (e7824c26ed)	CCTBX commit	Wed, 10 Aug 2022 09:55:35 -0700	277 lines
[git/cctbx_project] master: Bug fix: Cast int array to double (when displaying Rfree) (7e64968e79)	CCTBX commit	Wed, 10 Aug 2022 17:05:09 +0100	302 lines
[git/cctbx_project] master: show xtricorder and xtriage buttons only for phenix and not for cctbx (ae5d7b2ad4)	CCTBX commit	Wed, 10 Aug 2022 14:44:58 +0100	935 lines
[git/cctbx_project] master: Put xtricorder's temp directory into current working directory and replace any backslashes on Windows with forwardslashes for the sake of phasertng (8ebe7bc105)	CCTBX commit	Wed, 10 Aug 2022 00:42:38 +0100	172 lines
[git/cctbx_project] master: Tidying up integration of Xtricorder into HKLviewer (bfa1374a92)	CCTBX commit	Tue, 9 Aug 2022 18:18:22 +0100	375 lines
[git/cctbx_project] master: fix typo (16be1f887c)	CCTBX commit	Tue, 9 Aug 2022 09:27:29 -0700	121 lines
[git/cctbx_project] master: mmtbx: add import (3e149529f5)	CCTBX commit	Mon, 8 Aug 2022 23:09:13 -0700	86 lines
[git/cctbx_project] master: Do not fix rotamers/include into rotamer restraints residues with side chains having covalent links (34447f2265)	CCTBX commit	Mon, 8 Aug 2022 18:48:42 -0700	359 lines
[git/cctbx_project] master: clean clutter (7f09e0aeeb)	CCTBX commit	Mon, 8 Aug 2022 15:12:33 -0700	88 lines
[git/cctbx_project] master: Assert the obvious (ebca42b62f)	CCTBX commit	Mon, 8 Aug 2022 15:09:21 -0700	94 lines
[git/cctbx_project] master: DDR guts (ebd36be178)	CCTBX commit	Mon, 8 Aug 2022 14:50:56 -0700	409 lines
[git/cctbx_project] master: update (53de49e6ca)	CCTBX commit	Mon, 8 Aug 2022 14:48:34 -0700	88 lines
[git/cctbx_project] master: ddr stub (393bcb9386)	CCTBX commit	Mon, 8 Aug 2022 11:16:19 -0700	95 lines
[git/cctbx_project] master: Proof of concept xtricorder integration to HKLviewer (4df08c7516)	CCTBX commit	Mon, 8 Aug 2022 18:33:19 +0100	291 lines
[git/cctbx_project] master: conda: remove defaults channel (e4cfdea5b7)	CCTBX commit	Mon, 8 Aug 2022 09:20:51 -0700	116 lines
[git/cctbx_project] master: mmtbx: remove unused import (18eac67764)	CCTBX commit	Sun, 7 Aug 2022 13:20:18 -0700	88 lines
[git/cctbx_project] master: Remove debugging prints that were accidentally committed. (354c2e8d89)	CCTBX commit	Sun, 7 Aug 2022 14:22:58 +0100	98 lines
[git/cctbx_project] master: Changes to allow docking in a sphere without analysing the whole map. Also a little Python2 compatibility fix. (ef386c986e)	CCTBX commit	Sun, 7 Aug 2022 09:53:59 +0100	309 lines
[git/cctbx_project] master: Coerce data to the correct sequence type. (b750c918c0)	CCTBX commit	Sat, 6 Aug 2022 15:34:09 -0700	99 lines
[git/cctbx_project] master: remove ALL MgO (09dc3fb95a)	CCTBX commit	Fri, 5 Aug 2022 17:16:00 -0700	104 lines
[git/cctbx_project] master: removing obsolete test (4d4f015274)	CCTBX commit	Fri, 5 Aug 2022 16:43:10 -0700	308 lines
[git/cctbx_project] master: reverse the MgO until tests are fixed (bbe314589d)	CCTBX commit	Fri, 5 Aug 2022 15:18:30 -0700	129 lines
[git/cctbx_project] master: small tidy (70a5aa2456)	CCTBX commit	Fri, 5 Aug 2022 12:21:24 -0700	117 lines
[git/cctbx_project] master: addition of HIS flipper to QMR (9b415b5b49)	CCTBX commit	Fri, 5 Aug 2022 10:57:17 -0700	857 lines
[git/cctbx_project] master: better printouts (9dd7b86015)	CCTBX commit	Fri, 5 Aug 2022 10:57:17 -0700	212 lines
[git/cctbx_project] master: MCL reorg and alpha version of Mg-O coordination (416ae4670c)	CCTBX commit	Fri, 5 Aug 2022 10:57:17 -0700	655 lines
[git/cctbx_project] master: Do not overwhelm WBmessenger.ProcessBrowserMessage() with the flurry of tooltip messages that can get emitted by HKLjavascript.PickingProxyfunc() when tooltips are shown for a large dataset as this slows down or makes HKLviewer unresponsive. Instead replace messages rather than appending them. (7c1b520cdd)	CCTBX commit	Fri, 5 Aug 2022 16:27:15 +0100	275 lines
[git/cctbx_project] master: silence spurious tooltips when moving mouse close to edges of window (9f35d56c9a)	CCTBX commit	Fri, 5 Aug 2022 16:27:15 +0100	176 lines
[git/cctbx_project] master: clean clutter (95f2430cee)	CCTBX commit	Fri, 5 Aug 2022 08:30:18 -0600	82 lines
[git/cctbx_project] master: Fix getting number of duplications of chains from PDB-formatted fa file (ae2e4b7a25)	CCTBX commit	Fri, 5 Aug 2022 05:41:36 -0700	144 lines
[git/cctbx_project] master: Moving printed plane equation according to browser font size so it doesn't get obscured by reset and toggle buttons when choosing bigger fonts (6a997aceba)	CCTBX commit	Fri, 5 Aug 2022 09:17:43 +0100	162 lines
[git/cctbx_project] master: Remove debugging print (964a3ab4c4)	CCTBX commit	Thu, 4 Aug 2022 16:30:24 -0700	90 lines
[git/cctbx_project] master: Function to get map-model CC and map values, per atom, given fmodel. It should be used as a model to replace same functionality elsewhere. (f273633d9e)	CCTBX commit	Thu, 4 Aug 2022 16:21:48 -0700	658 lines
[git/cctbx_project] master: Do not ignore F-obs-filtered (7ae904e96a)	CCTBX commit	Thu, 4 Aug 2022 16:21:48 -0700	130 lines
[git/cctbx_project] master: Check for single chain ID in process_predicted_model (913312ee4a)	CCTBX commit	Thu, 4 Aug 2022 11:00:59 -0600	98 lines
[git/cctbx_project] master: This is obviously better! (627e6d22b4)	CCTBX commit	Wed, 3 Aug 2022 13:38:35 -0700	102 lines
[git/cctbx_project] master: typo (347472b678)	CCTBX commit	Wed, 3 Aug 2022 10:37:57 -0700	96 lines
[git/cctbx_project] master: added functionality to phenix.qi (b05d76a75c)	CCTBX commit	Wed, 3 Aug 2022 10:31:13 -0700	522 lines
[git/dxtbx] main: DIALS 3.10.3 Changelog (e4bc7c49)	DXTBX commit	Tue, 2 Aug 2022 18:17:57 +0100	134 lines
[git/cctbx_project] master: special case for ions (e33127dab5)	CCTBX commit	Mon, 1 Aug 2022 16:53:54 -0700	93 lines
[git/cctbx_project] master: update expected output (a696a54485)	CCTBX commit	Mon, 1 Aug 2022 12:56:32 -0600	135 lines
[git/cctbx_project] master: Add tests for AF json v3 (36524d5cf6)	CCTBX commit	Mon, 1 Aug 2022 12:53:36 -0600	77 lines
[git/cctbx_project] master: domains_from_pae make sure array is of type float; add backwards compatibility for python 2.7 (289963c5b3)	CCTBX commit	Mon, 1 Aug 2022 12:42:25 -0600	301 lines
[git/cctbx_project] master: Updated parse_pae_file function (#775) (7cfa8224f7)	CCTBX commit	Mon, 1 Aug 2022 12:04:03 -0600	1406 lines
[git/cctbx_project] master: restore b906a8c version of domains_from_pae.py so we can merge changes (d886360247)	CCTBX commit	Mon, 1 Aug 2022 11:00:16 -0700	216 lines
[git/dxtbx] main: NXmx: ignore empty pixel mask (#529) (4d1860e7)	DXTBX commit	Mon, 1 Aug 2022 08:44:31 +0100	148 lines
[git/cctbx_project] tag 'v2022.7' created	CCTBX commit	Sun, 31 Jul 2022 22:32:47 -0700	40 lines
[git/cctbx_project] master: Update CHANGELOG.rst for 2022.7 release (1cf4af4d8c)	CCTBX commit	Sun, 31 Jul 2022 22:32:47 -0700	87 lines

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